Wall clock time and date at job start Mon Mar 30 2020 02:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86795 * 120.00056 * 2 1 4 4 H 1.48501 * 109.47171 * 270.00330 * 3 2 1 5 5 H 1.48503 * 109.47266 * 30.00308 * 3 2 1 6 6 H 1.48494 * 109.47351 * 150.00512 * 3 2 1 7 7 C 1.37879 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00192 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99990 * 179.97438 * 7 2 1 10 10 S 1.81400 * 109.47118 * 179.97438 * 9 7 2 11 11 O 1.42097 * 109.47048 * 63.61463 * 10 9 7 12 12 C 1.81399 * 102.99964 * 179.97438 * 10 9 7 13 13 C 1.53002 * 109.47404 * 179.97438 * 12 10 9 14 14 C 1.55238 * 110.58012 * 289.87798 * 13 12 10 15 15 C 1.54894 * 102.58338 * 203.33342 * 14 13 12 16 16 C 1.54266 * 104.31305 * 37.93170 * 15 14 13 17 17 C 1.53869 * 106.60031 * 336.32486 * 16 15 14 18 18 H 0.96999 * 120.00565 * 359.97438 * 1 2 3 19 19 H 1.08997 * 109.47430 * 59.99593 * 9 7 2 20 20 H 1.09002 * 109.46937 * 299.99643 * 9 7 2 21 21 H 1.09008 * 109.47188 * 60.00033 * 12 10 9 22 22 H 1.09000 * 109.47721 * 300.00289 * 12 10 9 23 23 H 1.09006 * 110.43291 * 52.46048 * 13 12 10 24 24 H 1.08996 * 110.89448 * 85.04906 * 14 13 12 25 25 H 1.08993 * 110.76342 * 321.56571 * 14 13 12 26 26 H 1.09002 * 110.48891 * 279.18596 * 15 14 13 27 27 H 1.08998 * 110.48494 * 156.67683 * 15 14 13 28 28 H 1.09001 * 110.03084 * 95.60669 * 16 15 14 29 29 H 1.08996 * 110.03108 * 216.98559 * 16 15 14 30 30 H 1.08999 * 110.04012 * 119.28327 * 17 16 15 31 31 H 1.09006 * 110.02998 * 240.67078 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 16 4.1161 -2.9043 -0.0010 11 8 3.7122 -3.5496 -1.2008 12 6 5.9186 -2.6999 -0.0025 13 6 6.5880 -4.0757 -0.0019 14 6 6.3834 -4.7814 1.3656 15 6 7.5629 -5.7846 1.4073 16 6 8.7384 -5.0181 0.7668 17 6 8.1186 -3.9314 -0.1291 18 1 -0.4851 0.8400 0.0004 19 1 3.8752 -0.6804 0.8888 20 1 3.8744 -0.6801 -0.8912 21 1 6.2224 -2.1480 0.8871 22 1 6.2211 -2.1486 -0.8929 23 1 6.1942 -4.6908 -0.8110 24 1 5.4287 -5.3065 1.3931 25 1 6.4558 -4.0658 2.1844 26 1 7.3265 -6.6758 0.8258 27 1 7.7986 -6.0536 2.4369 28 1 9.3509 -4.5580 1.5423 29 1 9.3443 -5.6970 0.1669 30 1 8.4302 -2.9440 0.2115 31 1 8.4238 -4.0825 -1.1646 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082789666.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:26 Heat of formation + Delta-G solvation = -90.131992 kcal Electronic energy + Delta-G solvation = -12546.583974 eV Core-core repulsion = 10338.533605 eV Total energy + Delta-G solvation = -2208.050368 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.03678 -36.54959 -35.15906 -32.20582 -31.42179 -29.48284 -26.23540 -24.50324 -21.30346 -20.68866 -19.13080 -18.34604 -16.90253 -16.60955 -15.83012 -15.69640 -15.55958 -14.94962 -14.41997 -14.36656 -14.10704 -13.53953 -13.25199 -12.73295 -12.49413 -12.37424 -11.98989 -11.87402 -11.81749 -11.74174 -11.65391 -11.38777 -11.19550 -10.88071 -10.60002 -8.94406 -8.36146 -6.46005 0.84795 1.33060 1.33828 1.46468 2.11741 2.31274 2.94168 3.13724 3.71108 3.77059 3.89096 4.33735 4.43282 4.59488 4.65544 4.69387 4.78958 4.87955 4.89482 4.94892 5.03301 5.11110 5.19316 5.32791 5.42523 5.45885 5.53673 5.60592 6.00499 6.60498 7.19672 8.79394 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.057606 B = 0.006873 C = 0.006517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.946377 B = 4072.861441 C = 4295.552967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.951 3.049 4 H -0.282 1.282 5 H -0.275 1.275 6 H -0.227 1.227 7 C -0.529 4.529 8 H 0.037 0.963 9 C -0.317 4.317 10 S 1.268 4.732 11 O -0.933 6.933 12 C -0.437 4.437 13 C -0.078 4.078 14 C -0.133 4.133 15 C -0.125 4.125 16 C -0.121 4.121 17 C -0.118 4.118 18 H 0.271 0.729 19 H 0.107 0.893 20 H 0.024 0.976 21 H 0.151 0.849 22 H 0.067 0.933 23 H 0.046 0.954 24 H 0.072 0.928 25 H 0.100 0.900 26 H 0.058 0.942 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.805 -6.120 7.845 21.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.186 4.186 3 Si 0.773 3.227 4 H -0.208 1.208 5 H -0.200 1.200 6 H -0.149 1.149 7 C -0.567 4.567 8 H 0.055 0.945 9 C -0.456 4.456 10 S 1.471 4.529 11 O -0.928 6.928 12 C -0.575 4.575 13 C -0.098 4.098 14 C -0.170 4.170 15 C -0.162 4.162 16 C -0.159 4.159 17 C -0.157 4.157 18 H 0.080 0.920 19 H 0.125 0.875 20 H 0.043 0.957 21 H 0.169 0.831 22 H 0.086 0.914 23 H 0.064 0.936 24 H 0.091 0.909 25 H 0.119 0.881 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 18.118 -6.876 7.823 20.899 hybrid contribution 0.193 1.916 -2.516 3.169 sum 18.311 -4.960 5.307 19.699 Atomic orbital electron populations 1.70039 1.08393 1.28642 1.51178 1.26040 0.95628 1.03631 0.93282 0.85651 0.80505 0.77819 0.78747 1.20838 1.20006 1.14898 1.20604 0.89586 0.93928 1.52631 0.94460 1.25499 1.01582 1.15813 1.02724 1.69006 0.85776 0.87605 1.10487 1.92916 1.78817 1.67484 1.53623 1.27728 1.18491 1.03247 1.08030 1.21682 0.96124 0.92859 0.99087 1.22886 0.99307 0.98918 0.95928 1.22367 0.94526 0.97675 1.01636 1.22132 0.97871 0.97031 0.98871 1.22236 0.93288 1.00369 0.99763 0.92029 0.87487 0.95691 0.83102 0.91372 0.93555 0.90914 0.88108 0.92314 0.89672 0.90347 0.91806 0.90653 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.36 13.96 21.45 0.30 -59.06 16 2 C 0.01 0.79 5.47 84.66 0.46 1.25 16 3 Si 0.95 43.32 27.47 68.60 1.88 45.20 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 5 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 6 H -0.23 -8.89 6.54 99.48 0.65 -8.24 16 7 C -0.53 -30.82 9.68 25.60 0.25 -30.57 16 8 H 0.04 2.41 7.96 -2.91 -0.02 2.39 16 9 C -0.32 -14.35 4.75 71.24 0.34 -14.01 16 10 S 1.27 47.62 12.74 -56.49 -0.72 46.90 16 11 O -0.93 -48.79 18.14 -148.98 -2.70 -51.49 16 12 C -0.44 -11.80 5.25 71.98 0.38 -11.42 16 13 C -0.08 -1.92 2.85 -9.60 -0.03 -1.95 16 14 C -0.13 -2.50 6.01 32.01 0.19 -2.31 16 15 C -0.12 -1.99 6.82 31.67 0.22 -1.77 16 16 C -0.12 -1.91 6.80 31.32 0.21 -1.70 16 17 C -0.12 -2.37 6.37 31.32 0.20 -2.17 16 18 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 19 H 0.11 4.03 7.20 -2.39 -0.02 4.02 16 20 H 0.02 1.16 7.57 -2.39 -0.02 1.14 16 21 H 0.15 2.91 8.03 -2.39 -0.02 2.89 16 22 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 24 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.10 1.45 7.98 -2.39 -0.02 1.43 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 1.37 7.84 -2.39 -0.02 1.35 16 31 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -79.07 267.09 2.01 -77.07 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: 1.02 Total: 6.03 kcal Atomic # 6 Polarization: -66.87 SS G_CDS: 2.22 Total: -64.65 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: 0.30 Total: -59.06 kcal Atomic # 8 Polarization: -48.79 SS G_CDS: -2.70 Total: -51.49 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.20 kcal Atomic # 16 Polarization: 47.62 SS G_CDS: -0.72 Total: 46.90 kcal Total: -79.07 2.01 -77.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082789666.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.064 kcal (2) G-P(sol) polarization free energy of solvation -79.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds