Wall clock time and date at job start Mon Mar 30 2020 02:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47398 * 2 1 4 4 S 1.81394 * 109.47140 * 179.97438 * 3 2 1 5 5 O 1.42100 * 109.47152 * 63.61470 * 4 3 2 6 6 C 1.81402 * 102.99875 * 180.02562 * 4 3 2 7 7 C 1.53008 * 109.47108 * 174.53885 * 6 4 3 8 8 C 1.50697 * 115.56072 * 40.36396 * 7 6 4 9 9 H 1.08008 * 120.00063 * 266.85868 * 8 7 6 10 10 C 1.37872 * 120.00134 * 86.86146 * 8 7 6 11 11 N 1.31516 * 119.99934 * 353.99681 * 10 8 7 12 12 Si 1.86803 * 120.00117 * 173.99803 * 10 8 7 13 13 H 1.48497 * 109.47228 * 90.00360 * 12 10 8 14 14 H 1.48500 * 109.46809 * 210.00154 * 12 10 8 15 15 H 1.48500 * 109.47071 * 329.99589 * 12 10 8 16 16 C 1.52993 * 117.49856 * 186.05780 * 7 6 4 17 17 C 1.52996 * 60.03387 * 107.47171 * 16 7 6 18 18 H 1.09001 * 109.47146 * 300.00297 * 1 2 3 19 19 H 1.09001 * 109.46901 * 59.99781 * 1 2 3 20 20 H 1.08997 * 109.47078 * 179.97438 * 1 2 3 21 21 H 1.09007 * 109.47472 * 239.99959 * 2 1 3 22 22 H 1.08998 * 109.47400 * 120.00281 * 2 1 3 23 23 H 1.08998 * 109.46906 * 60.00167 * 3 2 1 24 24 H 1.09001 * 109.47274 * 299.99991 * 3 2 1 25 25 H 1.08997 * 109.47094 * 54.53519 * 6 4 3 26 26 H 1.09001 * 109.46843 * 294.52986 * 6 4 3 27 27 H 0.97001 * 119.99871 * 185.02338 * 11 10 8 28 28 H 1.09004 * 117.49944 * 214.97963 * 16 7 6 29 29 H 1.09000 * 117.49859 * 359.96614 * 16 7 6 30 30 H 1.09004 * 117.49524 * 107.50067 * 17 16 7 31 31 H 1.09000 * 117.50134 * 252.51740 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 3.8540 1.4425 0.0008 5 8 4.3282 0.8469 -1.1991 6 6 4.2621 3.2100 0.0015 7 6 5.7760 3.3838 0.1394 8 6 6.6165 2.4102 -0.6457 9 1 6.9613 1.4978 -0.1818 10 6 6.9456 2.6841 -1.9563 11 7 6.4303 3.7339 -2.5580 12 14 8.1232 1.5641 -2.8774 13 1 7.3555 0.4889 -3.5553 14 1 8.8679 2.3546 -3.8902 15 1 9.0823 0.9588 -1.9189 16 6 6.3116 4.8076 0.3032 17 6 6.3131 3.8486 1.4954 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 1.8934 -0.5139 -0.8900 22 1 1.8933 -0.5139 0.8899 23 1 1.6768 1.9563 0.8900 24 1 1.6768 1.9564 -0.8900 25 1 3.7625 3.6979 0.8384 26 1 3.9285 3.6602 -0.9335 27 1 6.6034 3.8865 -3.5002 28 1 7.2719 5.0401 -0.1570 29 1 5.5855 5.6205 0.3121 30 1 7.2746 3.4503 1.8195 31 1 5.5879 4.0304 2.2885 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083862565.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:57 Heat of formation + Delta-G solvation = -27.270857 kcal Electronic energy + Delta-G solvation = -12919.308459 eV Core-core repulsion = 10713.983954 eV Total energy + Delta-G solvation = -2205.324505 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -36.49014 -34.52493 -34.23401 -31.82889 -27.75736 -26.91332 -25.18825 -21.40071 -21.07430 -19.10031 -16.65328 -15.84102 -15.10783 -14.58946 -14.52349 -14.02893 -13.39504 -13.10478 -12.82987 -12.53405 -11.99074 -11.86431 -11.46893 -11.03004 -10.89231 -10.82231 -10.73314 -10.45869 -10.40757 -10.12930 -9.63150 -9.15204 -8.72641 -8.32940 -8.02304 -7.11749 -5.95636 -4.03515 2.50866 3.40757 3.47224 3.50233 3.76834 4.53891 4.85282 5.13364 5.22589 5.33635 5.38334 5.47111 5.72341 5.91096 5.99459 6.09274 6.18027 6.23790 6.33431 6.44398 6.52726 6.55380 6.76791 6.90039 7.14242 7.46052 7.54924 7.96315 8.40377 8.97154 9.67689 11.12947 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.031162 B = 0.010692 C = 0.008743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.308484 B = 2618.110973 C = 3201.615129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 C -0.480 4.480 4 S 1.255 4.745 5 O -0.820 6.820 6 C -0.387 4.387 7 C 0.061 3.939 8 C -0.507 4.507 9 H 0.064 0.936 10 C 0.089 3.911 11 N -0.879 5.879 12 Si 0.889 3.111 13 H -0.277 1.277 14 H -0.289 1.289 15 H -0.272 1.272 16 C -0.153 4.153 17 C -0.210 4.210 18 H 0.053 0.947 19 H 0.049 0.951 20 H 0.051 0.949 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.102 0.898 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.258 0.742 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.733 -3.614 8.746 12.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.139 4.139 3 C -0.613 4.613 4 S 1.452 4.548 5 O -0.815 6.815 6 C -0.526 4.526 7 C 0.059 3.941 8 C -0.545 4.545 9 H 0.082 0.918 10 C -0.115 4.115 11 N -0.515 5.515 12 Si 0.717 3.283 13 H -0.203 1.203 14 H -0.215 1.215 15 H -0.197 1.197 16 C -0.192 4.192 17 C -0.247 4.247 18 H 0.072 0.928 19 H 0.068 0.932 20 H 0.070 0.930 21 H 0.081 0.919 22 H 0.088 0.912 23 H 0.120 0.880 24 H 0.091 0.909 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.123 -4.271 8.553 11.922 hybrid contribution -0.384 0.845 -2.539 2.704 sum -7.507 -3.426 6.014 10.211 Atomic orbital electron populations 1.21783 0.96129 1.01030 1.01567 1.21031 0.95773 0.94727 1.02379 1.28089 1.26293 1.01135 1.05821 1.70149 0.82300 0.89044 1.13327 1.93138 1.70767 1.67185 1.50419 1.27091 1.03460 1.17592 1.04447 1.18256 0.87910 0.94807 0.93077 1.20379 1.32690 1.04696 0.96761 0.91793 1.24847 0.95144 0.94147 0.97397 1.69983 1.43898 1.27289 1.10330 0.86627 0.80945 0.80999 0.79762 1.20255 1.21519 1.19701 1.22490 1.01922 0.93876 1.00941 1.23131 1.01907 1.07774 0.91867 0.92762 0.93217 0.93011 0.91865 0.91187 0.87992 0.90924 0.90266 0.90071 0.93212 0.90085 0.92112 0.90167 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 37.16 0.37 -1.33 16 2 C -0.10 -1.38 5.94 -26.73 -0.16 -1.53 16 3 C -0.48 -7.27 5.92 37.16 0.22 -7.05 16 4 S 1.25 23.57 12.53 -107.50 -1.35 22.22 16 5 O -0.82 -21.22 16.82 -35.23 -0.59 -21.81 16 6 C -0.39 -8.24 6.03 37.16 0.22 -8.02 16 7 C 0.06 1.47 1.68 -155.62 -0.26 1.21 16 8 C -0.51 -14.05 6.60 -34.44 -0.23 -14.28 16 9 H 0.06 1.76 7.82 -52.48 -0.41 1.35 16 10 C 0.09 2.59 5.38 -17.82 -0.10 2.50 16 11 N -0.88 -26.41 12.84 55.43 0.71 -25.70 16 12 Si 0.89 23.03 29.55 -169.99 -5.02 18.00 16 13 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 14 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 15 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 16 C -0.15 -3.61 9.34 -26.74 -0.25 -3.86 16 17 C -0.21 -4.30 9.89 -26.70 -0.26 -4.57 16 18 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 19 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 20 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 22 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.10 1.24 8.14 -51.92 -0.42 0.82 16 24 H 0.07 1.23 8.14 -51.92 -0.42 0.80 16 25 H 0.08 1.37 7.95 -51.93 -0.41 0.96 16 26 H 0.08 1.99 8.14 -51.92 -0.42 1.57 16 27 H 0.26 7.50 8.32 -40.82 -0.34 7.17 16 28 H 0.08 2.06 8.14 -51.93 -0.42 1.63 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 31 H 0.07 1.19 8.09 -51.93 -0.42 0.77 16 LS Contribution 275.49 15.07 4.15 4.15 Total: -1.00 -34.31 275.49 -7.57 -41.88 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -5.03 Total: -1.82 kcal Atomic # 6 Polarization: -36.47 SS G_CDS: -0.44 Total: -36.92 kcal Atomic # 7 Polarization: -26.41 SS G_CDS: 0.71 Total: -25.70 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.59 Total: -21.81 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.00 kcal Atomic # 16 Polarization: 23.57 SS G_CDS: -1.35 Total: 22.22 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -34.31 -7.57 -41.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862565.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.607 kcal (2) G-P(sol) polarization free energy of solvation -34.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds