Wall clock time and date at job start Mon Mar 30 2020 02:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47398 * 2 1 4 4 S 1.81394 * 109.47140 * 179.97438 * 3 2 1 5 5 O 1.42100 * 109.47152 * 63.61470 * 4 3 2 6 6 C 1.81402 * 102.99875 * 180.02562 * 4 3 2 7 7 C 1.53008 * 109.47108 * 174.53885 * 6 4 3 8 8 C 1.50697 * 115.56072 * 40.36396 * 7 6 4 9 9 H 1.08008 * 120.00063 * 266.85868 * 8 7 6 10 10 C 1.37872 * 120.00134 * 86.86146 * 8 7 6 11 11 N 1.31516 * 119.99934 * 353.99681 * 10 8 7 12 12 Si 1.86803 * 120.00117 * 173.99803 * 10 8 7 13 13 H 1.48497 * 109.47228 * 90.00360 * 12 10 8 14 14 H 1.48500 * 109.46809 * 210.00154 * 12 10 8 15 15 H 1.48500 * 109.47071 * 329.99589 * 12 10 8 16 16 C 1.52993 * 117.49856 * 186.05780 * 7 6 4 17 17 C 1.52996 * 60.03387 * 107.47171 * 16 7 6 18 18 H 1.09001 * 109.47146 * 300.00297 * 1 2 3 19 19 H 1.09001 * 109.46901 * 59.99781 * 1 2 3 20 20 H 1.08997 * 109.47078 * 179.97438 * 1 2 3 21 21 H 1.09007 * 109.47472 * 239.99959 * 2 1 3 22 22 H 1.08998 * 109.47400 * 120.00281 * 2 1 3 23 23 H 1.08998 * 109.46906 * 60.00167 * 3 2 1 24 24 H 1.09001 * 109.47274 * 299.99991 * 3 2 1 25 25 H 1.08997 * 109.47094 * 54.53519 * 6 4 3 26 26 H 1.09001 * 109.46843 * 294.52986 * 6 4 3 27 27 H 0.97001 * 119.99871 * 185.02338 * 11 10 8 28 28 H 1.09004 * 117.49944 * 214.97963 * 16 7 6 29 29 H 1.09000 * 117.49859 * 359.96614 * 16 7 6 30 30 H 1.09004 * 117.49524 * 107.50067 * 17 16 7 31 31 H 1.09000 * 117.50134 * 252.51740 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 3.8540 1.4425 0.0008 5 8 4.3282 0.8469 -1.1991 6 6 4.2621 3.2100 0.0015 7 6 5.7760 3.3838 0.1394 8 6 6.6165 2.4102 -0.6457 9 1 6.9613 1.4978 -0.1818 10 6 6.9456 2.6841 -1.9563 11 7 6.4303 3.7339 -2.5580 12 14 8.1232 1.5641 -2.8774 13 1 7.3555 0.4889 -3.5553 14 1 8.8679 2.3546 -3.8902 15 1 9.0823 0.9588 -1.9189 16 6 6.3116 4.8076 0.3032 17 6 6.3131 3.8486 1.4954 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 1.8934 -0.5139 -0.8900 22 1 1.8933 -0.5139 0.8899 23 1 1.6768 1.9563 0.8900 24 1 1.6768 1.9564 -0.8900 25 1 3.7625 3.6979 0.8384 26 1 3.9285 3.6602 -0.9335 27 1 6.6034 3.8865 -3.5002 28 1 7.2719 5.0401 -0.1570 29 1 5.5855 5.6205 0.3121 30 1 7.2746 3.4503 1.8195 31 1 5.5879 4.0304 2.2885 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862565.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:56 Heat of formation + Delta-G solvation = -50.719652 kcal Electronic energy + Delta-G solvation = -12920.325275 eV Core-core repulsion = 10713.983954 eV Total energy + Delta-G solvation = -2206.341321 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.31042 -36.26721 -35.38130 -33.96524 -29.42453 -28.14231 -27.22495 -22.82291 -22.53033 -20.99469 -18.38215 -17.67638 -16.67439 -16.25444 -16.03902 -15.80269 -14.92645 -14.65444 -14.55270 -13.87736 -13.60505 -13.32897 -13.00661 -12.90405 -12.85280 -12.41076 -12.30181 -12.06475 -11.89068 -11.60141 -11.47726 -10.97619 -10.69316 -10.29274 -9.79440 -8.76116 -8.14050 -6.22385 1.01292 1.29844 1.37104 1.40118 2.26140 2.41596 3.18338 3.37135 3.56172 4.03033 4.12450 4.36816 4.47394 4.54529 4.67114 4.77305 4.86029 4.92980 4.94963 5.08786 5.14421 5.21209 5.26908 5.35430 5.40832 5.67377 5.73739 5.81930 6.34890 6.84801 7.49416 8.93797 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.031162 B = 0.010692 C = 0.008743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.308484 B = 2618.110973 C = 3201.615129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 C -0.462 4.462 4 S 1.294 4.706 5 O -0.902 6.902 6 C -0.386 4.386 7 C 0.022 3.978 8 C -0.503 4.503 9 H 0.059 0.941 10 C 0.034 3.966 11 N -0.912 5.912 12 Si 0.930 3.070 13 H -0.295 1.295 14 H -0.283 1.283 15 H -0.254 1.254 16 C -0.171 4.171 17 C -0.166 4.166 18 H 0.075 0.925 19 H 0.037 0.963 20 H 0.067 0.933 21 H 0.033 0.967 22 H 0.100 0.900 23 H 0.148 0.852 24 H 0.052 0.948 25 H 0.127 0.873 26 H 0.038 0.962 27 H 0.252 0.748 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.137 -3.952 11.622 15.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.148 4.148 3 C -0.599 4.599 4 S 1.495 4.505 5 O -0.898 6.898 6 C -0.524 4.524 7 C 0.021 3.979 8 C -0.541 4.541 9 H 0.077 0.923 10 C -0.166 4.166 11 N -0.551 5.551 12 Si 0.757 3.243 13 H -0.222 1.222 14 H -0.209 1.209 15 H -0.178 1.178 16 C -0.210 4.210 17 C -0.203 4.203 18 H 0.094 0.906 19 H 0.056 0.944 20 H 0.086 0.914 21 H 0.052 0.948 22 H 0.119 0.881 23 H 0.166 0.834 24 H 0.072 0.928 25 H 0.145 0.855 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.460 -4.606 11.442 14.957 hybrid contribution -0.087 0.924 -3.329 3.456 sum -8.547 -3.682 8.112 12.346 Atomic orbital electron populations 1.21772 0.94059 1.02343 1.02105 1.21177 0.97616 0.93388 1.02580 1.27911 1.21896 1.02904 1.07173 1.68945 0.84148 0.86465 1.10912 1.93024 1.74747 1.69133 1.52891 1.27052 1.01935 1.19218 1.04179 1.18409 0.89215 0.94347 0.95957 1.20755 1.31745 1.04825 0.96772 0.92286 1.25519 0.96885 0.95428 0.98770 1.70086 1.45945 1.28951 1.10082 0.85982 0.79802 0.79303 0.79243 1.22199 1.20883 1.17802 1.22416 1.00769 0.94265 1.03569 1.23203 1.02737 1.03376 0.91009 0.90554 0.94350 0.91448 0.94769 0.88120 0.83422 0.92842 0.85476 0.94284 0.93898 0.93238 0.91050 0.89861 0.86580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.91 71.98 0.71 -2.13 16 2 C -0.11 -2.69 5.94 30.60 0.18 -2.51 16 3 C -0.46 -12.66 5.92 71.98 0.43 -12.23 16 4 S 1.29 47.01 12.53 -56.49 -0.71 46.30 16 5 O -0.90 -47.85 16.82 -148.98 -2.51 -50.36 16 6 C -0.39 -15.82 6.03 71.98 0.43 -15.39 16 7 C 0.02 1.04 1.68 -52.90 -0.09 0.95 16 8 C -0.50 -28.06 6.60 25.60 0.17 -27.89 16 9 H 0.06 3.26 7.82 -2.91 -0.02 3.23 16 10 C 0.03 2.02 5.38 84.65 0.46 2.48 16 11 N -0.91 -56.81 12.84 21.45 0.28 -56.54 16 12 Si 0.93 48.38 29.55 68.60 2.03 50.40 16 13 H -0.29 -16.10 7.11 99.48 0.71 -15.39 16 14 H -0.28 -14.27 7.11 99.48 0.71 -13.56 16 15 H -0.25 -12.31 7.11 99.48 0.71 -11.60 16 16 C -0.17 -7.91 9.34 30.59 0.29 -7.62 16 17 C -0.17 -6.25 9.89 30.62 0.30 -5.95 16 18 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 19 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 20 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 21 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 22 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.15 2.77 8.14 -2.39 -0.02 2.75 16 24 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.13 3.84 7.95 -2.39 -0.02 3.83 16 26 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.25 15.31 8.32 -92.71 -0.77 14.54 16 28 H 0.05 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 30 H 0.08 3.08 8.14 -2.38 -0.02 3.07 16 31 H 0.12 3.29 8.09 -2.39 -0.02 3.27 16 Total: -1.00 -78.26 275.49 3.04 -75.21 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 1.07 Total: 5.27 kcal Atomic # 6 Polarization: -73.17 SS G_CDS: 2.88 Total: -70.29 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.28 Total: -56.54 kcal Atomic # 8 Polarization: -47.85 SS G_CDS: -2.51 Total: -50.36 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 2.03 Total: 50.40 kcal Atomic # 16 Polarization: 47.01 SS G_CDS: -0.71 Total: 46.30 kcal Total: -78.26 3.04 -75.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862565.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.494 kcal (2) G-P(sol) polarization free energy of solvation -78.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds