Wall clock time and date at job start Mon Mar 30 2020 02:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47514 * 2 1 4 4 S 1.81402 * 109.47600 * 179.97438 * 3 2 1 5 5 O 1.42100 * 109.47219 * 296.38991 * 4 3 2 6 6 C 1.81397 * 103.00286 * 179.97438 * 4 3 2 7 7 C 1.52997 * 109.47072 * 185.50833 * 6 4 3 8 8 C 1.50698 * 115.55425 * 319.93622 * 7 6 4 9 9 H 1.07998 * 120.00311 * 99.32273 * 8 7 6 10 10 C 1.37877 * 119.99804 * 279.33224 * 8 7 6 11 11 N 1.31520 * 119.99970 * 355.02699 * 10 8 7 12 12 Si 1.86796 * 120.00144 * 175.03116 * 10 8 7 13 13 H 1.48500 * 109.47422 * 59.99279 * 12 10 8 14 14 H 1.48504 * 109.47584 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.47015 * 299.99427 * 12 10 8 16 16 C 1.53005 * 117.49752 * 174.26310 * 7 6 4 17 17 C 1.52992 * 60.03302 * 252.49999 * 16 7 6 18 18 H 1.09006 * 109.47129 * 300.00271 * 1 2 3 19 19 H 1.09000 * 109.47114 * 59.99974 * 1 2 3 20 20 H 1.08997 * 109.47352 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.47514 * 239.99493 * 2 1 3 22 22 H 1.09003 * 109.47422 * 119.99609 * 2 1 3 23 23 H 1.09000 * 109.47498 * 59.99598 * 3 2 1 24 24 H 1.09000 * 109.46951 * 300.00125 * 3 2 1 25 25 H 1.09000 * 109.46994 * 65.50722 * 6 4 3 26 26 H 1.09005 * 109.47132 * 305.50838 * 6 4 3 27 27 H 0.97000 * 119.99675 * 185.00498 * 11 10 8 28 28 H 1.09002 * 117.49643 * 0.02562 * 16 7 6 29 29 H 1.09002 * 117.49858 * 144.99800 * 16 7 6 30 30 H 1.09000 * 117.50201 * 107.50027 * 17 16 7 31 31 H 1.09001 * 117.49993 * 252.51815 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 16 3.8540 1.4424 0.0008 5 8 4.3272 0.8471 1.2012 6 6 4.2621 3.2099 -0.0001 7 6 5.7759 3.3837 -0.1380 8 6 6.6163 2.4056 0.6418 9 1 7.0435 1.5460 0.1469 10 6 6.8396 2.6081 1.9872 11 7 6.4025 3.7037 2.5688 12 14 7.7631 1.3264 2.9840 13 1 9.1239 1.1449 2.4177 14 1 7.8707 1.7790 4.3943 15 1 7.0295 0.0362 2.9324 16 6 6.3122 4.8081 -0.2944 17 6 6.3131 3.8555 -1.4916 18 1 -0.3634 0.5139 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 1.6767 1.9563 0.8899 24 1 1.6767 1.9562 -0.8900 25 1 3.9284 3.6603 0.9347 26 1 3.7626 3.6977 -0.8372 27 1 6.6217 3.8806 3.4970 28 1 5.5864 5.6214 -0.2986 29 1 7.2727 5.0378 0.1668 30 1 5.5881 4.0419 -2.2838 31 1 7.2743 3.4581 -1.8178 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083862566.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:59 Heat of formation + Delta-G solvation = -27.183875 kcal Electronic energy + Delta-G solvation = -12951.309326 eV Core-core repulsion = 10745.988592 eV Total energy + Delta-G solvation = -2205.320733 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -36.47782 -34.52369 -34.23330 -31.83180 -27.75609 -26.91189 -25.17652 -21.39616 -21.06555 -19.09118 -16.66319 -15.82434 -15.10608 -14.57523 -14.52875 -14.01188 -13.39035 -13.10025 -12.82177 -12.53401 -11.98740 -11.86833 -11.45395 -11.02812 -10.90682 -10.81304 -10.66947 -10.45287 -10.40555 -10.11066 -9.60328 -9.11537 -8.77795 -8.31958 -8.01032 -7.11256 -5.94479 -4.03984 2.51019 3.42778 3.46805 3.59645 3.77362 4.56438 4.85764 5.13452 5.22987 5.34772 5.40920 5.47227 5.72398 5.91177 5.99601 6.09258 6.18061 6.23287 6.33472 6.44523 6.52915 6.56023 6.76957 6.92188 7.14997 7.44001 7.56342 7.96522 8.41012 8.97266 9.68849 11.13509 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.029493 B = 0.011290 C = 0.008977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.145533 B = 2479.431710 C = 3118.322125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 C -0.481 4.481 4 S 1.255 4.745 5 O -0.819 6.819 6 C -0.387 4.387 7 C 0.062 3.938 8 C -0.510 4.510 9 H 0.063 0.937 10 C 0.092 3.908 11 N -0.880 5.880 12 Si 0.890 3.110 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.266 1.266 16 C -0.155 4.155 17 C -0.209 4.209 18 H 0.049 0.951 19 H 0.053 0.947 20 H 0.051 0.949 21 H 0.069 0.931 22 H 0.062 0.938 23 H 0.071 0.929 24 H 0.101 0.899 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.259 0.741 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.727 -3.643 -8.716 12.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.139 4.139 3 C -0.614 4.614 4 S 1.452 4.548 5 O -0.814 6.814 6 C -0.526 4.526 7 C 0.060 3.940 8 C -0.548 4.548 9 H 0.081 0.919 10 C -0.112 4.112 11 N -0.516 5.516 12 Si 0.717 3.283 13 H -0.205 1.205 14 H -0.217 1.217 15 H -0.191 1.191 16 C -0.194 4.194 17 C -0.246 4.246 18 H 0.068 0.932 19 H 0.072 0.928 20 H 0.070 0.930 21 H 0.088 0.912 22 H 0.081 0.919 23 H 0.090 0.910 24 H 0.120 0.880 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.241 -4.375 -8.482 11.980 hybrid contribution -0.451 0.813 2.547 2.712 sum -7.692 -3.561 -5.935 10.348 Atomic orbital electron populations 1.21783 0.96140 1.01024 1.01560 1.21025 0.95761 0.94734 1.02376 1.28096 1.26375 1.01121 1.05795 1.70170 0.82244 0.88998 1.13341 1.93137 1.70763 1.67178 1.50363 1.27077 1.03435 1.17641 1.04450 1.18251 0.87957 0.94707 0.93086 1.20356 1.32910 1.08371 0.93159 0.91873 1.24828 0.94295 0.94702 0.97419 1.69987 1.44212 1.24913 1.12456 0.86682 0.79415 0.83393 0.78777 1.20538 1.21706 1.19113 1.22517 1.01987 0.94056 1.00799 1.23093 1.01859 1.07878 0.91777 0.93227 0.92764 0.93016 0.91188 0.91875 0.90960 0.88003 0.90121 0.90216 0.93197 0.92195 0.90031 0.91336 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 37.15 0.37 -1.34 16 2 C -0.10 -1.38 5.94 -26.74 -0.16 -1.54 16 3 C -0.48 -7.31 5.92 37.15 0.22 -7.09 16 4 S 1.26 23.65 12.52 -107.50 -1.35 22.30 16 5 O -0.82 -21.17 16.74 -35.23 -0.59 -21.76 16 6 C -0.39 -8.25 6.03 37.16 0.22 -8.03 16 7 C 0.06 1.49 1.66 -155.62 -0.26 1.23 16 8 C -0.51 -14.11 6.59 -34.44 -0.23 -14.33 16 9 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 10 C 0.09 2.69 5.36 -17.82 -0.10 2.60 16 11 N -0.88 -26.47 12.85 55.43 0.71 -25.76 16 12 Si 0.89 23.37 29.54 -169.99 -5.02 18.34 16 13 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 14 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 15 H -0.27 -7.24 7.11 56.52 0.40 -6.84 16 16 C -0.15 -3.64 9.42 -26.73 -0.25 -3.89 16 17 C -0.21 -4.29 9.89 -26.70 -0.26 -4.56 16 18 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 19 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 20 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 24 H 0.10 1.25 8.14 -51.92 -0.42 0.82 16 25 H 0.08 1.98 8.14 -51.92 -0.42 1.56 16 26 H 0.08 1.38 7.95 -51.92 -0.41 0.97 16 27 H 0.26 7.54 8.32 -40.82 -0.34 7.20 16 28 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.08 2.07 8.14 -51.93 -0.42 1.65 16 30 H 0.07 1.19 8.09 -51.93 -0.42 0.77 16 31 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 275.44 15.07 4.15 4.15 Total: -1.00 -34.22 275.44 -7.57 -41.78 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -5.03 Total: -2.12 kcal Atomic # 6 Polarization: -36.50 SS G_CDS: -0.44 Total: -36.94 kcal Atomic # 7 Polarization: -26.47 SS G_CDS: 0.71 Total: -25.76 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.59 Total: -21.76 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -5.02 Total: 18.34 kcal Atomic # 16 Polarization: 23.65 SS G_CDS: -1.35 Total: 22.30 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -34.22 -7.57 -41.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862566.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.598 kcal (2) G-P(sol) polarization free energy of solvation -34.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds