Wall clock time and date at job start Mon Mar 30 2020 02:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46806 * 2 1 4 4 S 1.81399 * 109.46958 * 119.99976 * 2 1 3 5 5 O 1.42098 * 109.46863 * 298.61308 * 4 2 1 6 6 C 1.81397 * 102.99877 * 55.00372 * 4 2 1 7 7 C 1.53002 * 109.47235 * 174.60946 * 6 4 2 8 8 C 1.50703 * 115.54592 * 320.62796 * 7 6 4 9 9 H 1.08007 * 119.99984 * 119.52224 * 8 7 6 10 10 C 1.37874 * 119.99897 * 299.51554 * 8 7 6 11 11 N 1.31518 * 120.00057 * 174.14655 * 10 8 7 12 12 Si 1.86795 * 120.00071 * 354.14852 * 10 8 7 13 13 H 1.48499 * 109.47236 * 90.67851 * 12 10 8 14 14 H 1.48501 * 109.47361 * 210.68079 * 12 10 8 15 15 H 1.48501 * 109.47174 * 330.67923 * 12 10 8 16 16 C 1.52996 * 117.50274 * 174.95356 * 7 6 4 17 17 C 1.53001 * 60.03351 * 252.49749 * 16 7 6 18 18 H 1.09005 * 109.47287 * 60.00056 * 1 2 3 19 19 H 1.09000 * 109.47122 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.47636 * 300.00026 * 1 2 3 21 21 H 1.08993 * 109.46927 * 240.00512 * 2 1 3 22 22 H 1.08999 * 109.47299 * 179.97438 * 3 2 1 23 23 H 1.08997 * 109.47514 * 300.00019 * 3 2 1 24 24 H 1.09004 * 109.47170 * 60.00056 * 3 2 1 25 25 H 1.09002 * 109.47339 * 54.60842 * 6 4 2 26 26 H 1.09005 * 109.46948 * 294.60928 * 6 4 2 27 27 H 0.97000 * 119.99805 * 180.02562 * 11 10 8 28 28 H 1.09004 * 117.49693 * 0.02562 * 16 7 6 29 29 H 1.08992 * 117.49874 * 144.99708 * 16 7 6 30 30 H 1.09002 * 117.49749 * 107.49843 * 17 16 7 31 31 H 1.08996 * 117.50507 * 252.51929 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 2.1346 -0.8551 1.4811 5 8 1.6876 -0.1668 2.6411 6 6 1.3149 -2.4703 1.3829 7 6 1.8301 -3.3729 2.5058 8 6 3.3050 -3.2695 2.7977 9 1 3.6415 -2.9598 3.7761 10 6 4.2248 -3.5704 1.8156 11 7 5.5066 -3.3706 2.0317 12 14 3.6504 -4.2618 0.1782 13 1 3.3969 -3.1462 -0.7687 14 1 4.6991 -5.1542 -0.3777 15 1 2.3983 -5.0347 0.3790 16 6 1.1724 -4.7447 2.6677 17 6 0.8926 -3.6381 3.6865 18 1 -0.3634 0.5138 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8899 21 1 1.8933 -0.5137 -0.8900 22 1 3.1299 1.4426 0.0005 23 1 1.6766 1.9564 -0.8899 24 1 1.6765 1.9563 0.8900 25 1 1.5320 -2.9300 0.4187 26 1 0.2380 -2.3382 1.4882 27 1 6.1536 -3.5819 1.3407 28 1 0.3728 -5.0045 1.9739 29 1 1.8063 -5.5725 2.9852 30 1 -0.0913 -3.1696 3.6632 31 1 1.3428 -3.7376 4.6741 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083862581.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:00 Heat of formation + Delta-G solvation = -24.774723 kcal Electronic energy + Delta-G solvation = -13299.464301 eV Core-core repulsion = 11094.248037 eV Total energy + Delta-G solvation = -2205.216264 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -36.89903 -34.92674 -34.26060 -32.27116 -28.44558 -26.84814 -25.36081 -21.58190 -21.43264 -19.11823 -17.03563 -16.28244 -15.28201 -15.03401 -14.30729 -14.21899 -13.50832 -13.23217 -12.76487 -12.68312 -12.39793 -12.03636 -12.00668 -11.53606 -11.01889 -10.99496 -10.79039 -10.66009 -10.45249 -10.23710 -9.67664 -9.42834 -8.92248 -8.76192 -8.40474 -7.22753 -6.23731 -4.26969 2.30441 3.15099 3.31743 3.39397 3.52685 4.30651 4.54761 4.87014 5.12749 5.18076 5.20560 5.52754 5.66216 5.75007 5.86080 5.89747 5.97001 6.14165 6.17729 6.22290 6.32098 6.39374 6.43903 6.54185 6.71308 6.95878 7.15381 7.62301 8.41201 8.82555 9.37126 10.86746 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.028287 B = 0.014328 C = 0.012361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.600153 B = 1953.774741 C = 2264.641220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.460 4.460 3 C -0.123 4.123 4 S 1.298 4.702 5 O -0.849 6.849 6 C -0.407 4.407 7 C 0.020 3.980 8 C -0.500 4.500 9 H 0.085 0.915 10 C 0.089 3.911 11 N -0.881 5.881 12 Si 0.850 3.150 13 H -0.265 1.265 14 H -0.286 1.286 15 H -0.250 1.250 16 C -0.191 4.191 17 C -0.182 4.182 18 H 0.052 0.948 19 H 0.055 0.945 20 H 0.055 0.945 21 H 0.112 0.888 22 H 0.065 0.935 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.098 0.902 26 H 0.070 0.930 27 H 0.270 0.730 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.148 3.054 -6.768 9.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.573 4.573 3 C -0.181 4.181 4 S 1.496 4.504 5 O -0.845 6.845 6 C -0.544 4.544 7 C 0.018 3.982 8 C -0.539 4.539 9 H 0.103 0.897 10 C -0.116 4.116 11 N -0.516 5.516 12 Si 0.676 3.324 13 H -0.191 1.191 14 H -0.213 1.213 15 H -0.174 1.174 16 C -0.230 4.230 17 C -0.219 4.219 18 H 0.071 0.929 19 H 0.074 0.926 20 H 0.074 0.926 21 H 0.131 0.869 22 H 0.084 0.916 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.116 0.884 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.361 3.465 -6.195 8.331 hybrid contribution -2.551 -0.432 -1.015 2.779 sum -6.912 3.032 -7.210 10.438 Atomic orbital electron populations 1.21810 0.94444 1.01757 1.02105 1.27985 1.01744 1.06721 1.20867 1.21374 1.01299 0.93609 1.01866 1.72056 1.11304 0.83876 0.83169 1.92938 1.80398 1.69761 1.41361 1.27343 1.06576 1.15973 1.04535 1.18833 0.94418 0.92670 0.92295 1.20490 0.85680 1.46875 1.00830 0.89691 1.24910 0.94493 0.93960 0.98263 1.69886 1.01038 1.45959 1.34760 0.87253 0.79953 0.80890 0.84298 1.19083 1.21268 1.17386 1.23076 1.03103 0.94220 1.02616 1.22823 0.99329 1.04339 0.95391 0.92878 0.92606 0.92632 0.86930 0.91615 0.92685 0.92530 0.88354 0.91153 0.91979 0.91509 0.89377 0.91271 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.96 37.16 0.33 -1.89 16 2 C -0.46 -7.44 3.44 -26.73 -0.09 -7.54 16 3 C -0.12 -1.80 9.19 37.16 0.34 -1.46 16 4 S 1.30 26.52 11.47 -107.50 -1.23 25.29 16 5 O -0.85 -21.04 18.13 -35.23 -0.64 -21.68 16 6 C -0.41 -8.40 4.45 37.16 0.17 -8.24 16 7 C 0.02 0.46 1.12 -155.62 -0.17 0.28 16 8 C -0.50 -13.08 8.13 -34.44 -0.28 -13.36 16 9 H 0.09 2.47 8.06 -52.48 -0.42 2.05 16 10 C 0.09 2.30 5.42 -17.82 -0.10 2.20 16 11 N -0.88 -24.07 13.96 55.43 0.77 -23.30 16 12 Si 0.85 18.81 24.71 -169.99 -4.20 14.61 16 13 H -0.27 -5.25 7.09 56.52 0.40 -4.85 16 14 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.25 -5.41 6.10 56.52 0.34 -5.06 16 16 C -0.19 -4.07 8.61 -26.73 -0.23 -4.30 16 17 C -0.18 -3.94 9.89 -26.69 -0.26 -4.21 16 18 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 19 H 0.05 0.83 6.65 -51.93 -0.35 0.49 16 20 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 21 H 0.11 1.61 8.14 -51.93 -0.42 1.18 16 22 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.10 1.89 5.22 -51.92 -0.27 1.62 16 26 H 0.07 1.36 7.01 -51.92 -0.36 1.00 16 27 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 30 H 0.07 1.40 8.08 -51.93 -0.42 0.99 16 31 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 LS Contribution 264.37 15.07 3.98 3.98 Total: -1.00 -29.55 264.37 -6.43 -35.98 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -4.82 Total: 3.63 kcal Atomic # 6 Polarization: -38.22 SS G_CDS: -0.30 Total: -38.52 kcal Atomic # 7 Polarization: -24.07 SS G_CDS: 0.77 Total: -23.30 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.64 Total: -21.68 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -4.20 Total: 14.61 kcal Atomic # 16 Polarization: 26.52 SS G_CDS: -1.23 Total: 25.29 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.55 -6.43 -35.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862581.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.203 kcal (2) G-P(sol) polarization free energy of solvation -29.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds