Wall clock time and date at job start Mon Mar 30 2020 02:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 H 1.07998 * 120.00129 * 240.00616 * 4 2 1 6 6 C 1.37880 * 119.99861 * 59.99898 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47432 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46890 * 120.00210 * 8 6 4 11 11 H 1.48501 * 109.47062 * 240.00257 * 8 6 4 12 12 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 13 13 C 1.33992 * 124.92369 * 240.00392 * 12 2 1 14 14 C 1.46785 * 106.18588 * 179.97438 * 13 12 2 15 15 C 1.39411 * 134.36946 * 179.97438 * 14 13 12 16 16 C 1.36733 * 119.71283 * 179.97438 * 15 14 13 17 17 C 1.38746 * 120.42068 * 359.97438 * 16 15 14 18 18 C 1.37846 * 120.68196 * 0.03275 * 17 16 15 19 19 C 1.38943 * 119.82058 * 359.96839 * 18 17 16 20 20 O 1.34450 * 124.92230 * 59.69652 * 12 2 1 21 21 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 22 22 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 25 25 H 1.08001 * 126.90471 * 359.95785 * 13 12 2 26 26 H 1.08002 * 120.14046 * 359.97438 * 15 14 13 27 27 H 1.07999 * 119.79089 * 180.02562 * 16 15 14 28 28 H 1.07997 * 119.65507 * 180.02562 * 17 16 15 29 29 H 1.08001 * 120.09057 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1457 -2.2877 -3.6037 10 1 1.1662 -1.5867 -4.8160 11 1 3.1468 -0.1874 -4.8164 12 6 2.0323 -0.7104 1.2305 13 6 2.8058 -0.1565 2.1740 14 6 3.0464 -1.2045 3.1732 15 6 3.7581 -1.2652 4.3704 16 6 3.7829 -2.4301 5.0859 17 6 3.1041 -3.5503 4.6281 18 6 2.3952 -3.5091 3.4466 19 6 2.3572 -2.3353 2.7042 20 8 1.7644 -1.9902 1.5437 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 0.7096 1.1617 -3.4844 25 1 3.1778 0.8573 2.1949 26 1 4.2877 -0.3957 4.7311 27 1 4.3335 -2.4784 6.0137 28 1 3.1316 -4.4639 5.2033 29 1 1.8707 -4.3868 3.0990 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084345961.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:04 Heat of formation + Delta-G solvation = 15.151854 kcal Electronic energy + Delta-G solvation = -13709.293444 eV Core-core repulsion = 11370.364574 eV Total energy + Delta-G solvation = -2338.928869 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.79052 -37.50643 -34.50505 -32.21627 -30.86349 -29.98126 -27.81599 -25.26308 -22.94285 -22.16275 -20.90660 -19.88877 -16.82851 -16.71748 -15.78139 -15.26780 -15.18851 -14.38914 -13.71717 -13.24761 -12.88376 -12.69298 -12.34782 -11.93606 -11.66542 -11.45696 -11.02777 -10.92266 -10.66815 -10.38413 -10.28609 -9.82742 -9.59792 -9.11560 -8.51490 -8.19318 -7.46908 -6.13554 -4.21474 1.37893 1.74956 3.12269 3.24980 3.33086 3.39320 3.45028 4.09447 4.35697 4.97537 5.16660 5.17815 5.19173 5.55338 5.63825 5.75309 6.05836 6.20878 6.29293 6.59948 6.67208 6.69897 6.75320 6.89566 6.92375 7.09472 7.15942 7.45737 7.67780 7.91999 7.96329 8.20319 8.79579 9.43961 10.92070 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.048263 B = 0.007388 C = 0.007034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.011856 B = 3789.121312 C = 3979.656391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.102 3.898 3 H 0.064 0.936 4 C -0.515 4.515 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.115 3.885 13 C -0.267 4.267 14 C -0.114 4.114 15 C -0.084 4.084 16 C -0.143 4.143 17 C -0.116 4.116 18 C -0.103 4.103 19 C 0.035 3.965 20 O -0.184 6.184 21 H 0.093 0.907 22 H 0.034 0.966 23 H 0.014 0.986 24 H 0.264 0.736 25 H 0.150 0.850 26 H 0.120 0.880 27 H 0.121 0.879 28 H 0.126 0.874 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.886 -4.317 10.742 11.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.084 3.916 3 H 0.082 0.918 4 C -0.553 4.553 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.067 3.933 13 C -0.285 4.285 14 C -0.115 4.115 15 C -0.102 4.102 16 C -0.161 4.161 17 C -0.134 4.134 18 C -0.122 4.122 19 C -0.013 4.013 20 O -0.084 6.084 21 H 0.112 0.888 22 H 0.053 0.947 23 H 0.033 0.967 24 H 0.073 0.927 25 H 0.168 0.832 26 H 0.138 0.862 27 H 0.139 0.861 28 H 0.144 0.856 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.639 -4.385 10.443 11.630 hybrid contribution 0.449 -0.316 -0.751 0.930 sum 3.088 -4.702 9.692 11.206 Atomic orbital electron populations 1.21807 0.96611 1.00148 1.00955 1.17880 0.93742 0.94554 0.85423 0.91830 1.21026 1.31960 1.12824 0.89522 0.92110 1.24927 0.94767 0.94943 0.99072 1.69871 1.36313 1.22702 1.23796 0.86404 0.78719 0.79724 0.82458 1.19637 1.20797 1.20809 1.23781 0.93283 0.79815 0.96421 1.22120 1.09661 1.00356 0.96413 1.20068 1.00484 0.94241 0.96705 1.20206 0.98655 0.98125 0.93263 1.20625 1.01818 0.93217 1.00448 1.20732 0.98429 0.98684 0.95596 1.19882 1.02614 0.94891 0.94803 1.19768 0.97801 0.96070 0.87684 1.84077 1.61169 1.29156 1.34016 0.88822 0.94676 0.96708 0.92656 0.83211 0.86181 0.86141 0.85574 0.85623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.95 37.16 0.33 -2.98 15 2 C 0.10 2.57 2.69 -92.92 -0.25 2.32 15 3 H 0.06 1.64 8.08 -51.93 -0.42 1.22 15 4 C -0.52 -14.15 8.55 -34.44 -0.29 -14.45 15 5 H 0.06 1.71 7.74 -52.49 -0.41 1.30 15 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 15 7 N -0.89 -24.54 11.32 55.43 0.63 -23.92 15 8 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 15 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 15 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 12 C 0.12 2.67 5.68 -35.80 -0.20 2.47 15 13 C -0.27 -5.53 10.97 -37.62 -0.41 -5.94 15 14 C -0.11 -2.20 6.40 -105.16 -0.67 -2.87 15 15 C -0.08 -1.32 10.05 -39.69 -0.40 -1.72 15 16 C -0.14 -1.92 9.98 -39.94 -0.40 -2.32 15 17 C -0.12 -1.57 10.01 -39.54 -0.40 -1.97 15 18 C -0.10 -1.67 10.07 -39.46 -0.40 -2.07 15 19 C 0.03 0.69 7.42 -38.47 -0.29 0.41 15 20 O -0.18 -4.23 10.58 3.92 0.04 -4.19 15 21 H 0.09 2.41 6.07 -51.93 -0.32 2.10 15 22 H 0.03 0.83 8.14 -51.93 -0.42 0.41 15 23 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 15 24 H 0.26 6.90 8.31 -40.82 -0.34 6.56 15 25 H 0.15 2.77 8.06 -52.49 -0.42 2.35 15 26 H 0.12 1.58 8.06 -52.49 -0.42 1.16 15 27 H 0.12 1.23 8.06 -52.49 -0.42 0.81 15 28 H 0.13 1.27 8.06 -52.49 -0.42 0.85 15 29 H 0.13 1.75 8.06 -52.49 -0.42 1.33 15 LS Contribution 255.59 15.07 3.85 3.85 Total: -1.00 -28.71 255.59 -7.21 -35.92 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -3.24 Total: -0.28 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: -3.47 Total: -27.45 kcal Atomic # 7 Polarization: -24.54 SS G_CDS: 0.63 Total: -23.92 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: 0.04 Total: -4.19 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.71 -7.21 -35.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084345961.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.070 kcal (2) G-P(sol) polarization free energy of solvation -28.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds