Wall clock time and date at job start Mon Mar 30 2020 02:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46664 * 2 1 4 4 C 1.50705 * 109.46870 * 120.00079 * 2 1 3 5 5 H 1.07994 * 119.99758 * 119.99874 * 4 2 1 6 6 C 1.37878 * 119.99787 * 299.99976 * 4 2 1 7 7 N 1.31512 * 120.00341 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99625 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47060 * 59.99837 * 8 6 4 10 10 H 1.48504 * 109.46905 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.47140 * 299.99912 * 8 6 4 12 12 C 1.50701 * 109.46961 * 240.00011 * 2 1 3 13 13 C 1.37860 * 120.01953 * 299.97962 * 12 2 1 14 14 C 1.38720 * 120.69001 * 180.09018 * 13 12 2 15 15 C 1.37759 * 120.27422 * 359.89714 * 14 13 12 16 16 C 1.39385 * 119.60104 * 0.06578 * 15 14 13 17 17 C 1.46789 * 134.34453 * 179.97438 * 16 15 14 18 18 C 1.33985 * 106.18242 * 180.02562 * 17 16 15 19 19 O 1.34451 * 110.16314 * 0.02562 * 18 17 16 20 20 C 1.34834 * 110.89263 * 359.97438 * 19 18 17 21 21 H 1.08997 * 109.46983 * 60.00165 * 1 2 3 22 22 H 1.09005 * 109.47337 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47157 * 299.99929 * 1 2 3 24 24 H 0.96997 * 120.00255 * 180.02562 * 7 6 4 25 25 H 1.08001 * 119.65825 * 0.02562 * 13 12 2 26 26 H 1.07996 * 119.86216 * 179.97438 * 14 13 12 27 27 H 1.08000 * 120.19975 * 180.34527 * 15 14 13 28 28 H 1.07998 * 126.90786 * 0.07673 * 17 16 15 29 29 H 1.08005 * 124.92146 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.8074 -1.1191 4.0078 10 1 1.8278 -0.4193 5.2205 11 1 1.8280 -2.5198 4.0082 12 6 2.0324 -0.7104 -1.2305 13 6 1.6999 -2.0304 -1.4488 14 6 2.1561 -2.6983 -2.5758 15 6 2.9486 -2.0475 -3.4956 16 6 3.2914 -0.7127 -3.2869 17 6 4.0920 0.2691 -4.0285 18 6 4.0526 1.4006 -3.3121 19 8 3.3119 1.2223 -2.2043 20 6 2.8312 -0.0360 -2.1448 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 0.7087 1.1612 3.4844 25 1 1.0786 -2.5502 -0.7345 26 1 1.8878 -3.7325 -2.7333 27 1 3.2986 -2.5671 -4.3753 28 1 4.6082 0.1112 -4.9639 29 1 4.5446 2.3226 -3.5850 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084345963.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:15 Heat of formation + Delta-G solvation = 17.906767 kcal Electronic energy + Delta-G solvation = -13955.748653 eV Core-core repulsion = 11616.939245 eV Total energy + Delta-G solvation = -2338.809407 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.83280 -37.51894 -34.47677 -32.14433 -30.81189 -28.99595 -27.87246 -25.11679 -22.98753 -21.91233 -21.16123 -19.36623 -16.89277 -16.50872 -16.01291 -15.43916 -15.00264 -14.48276 -13.63752 -13.08807 -12.69561 -12.42792 -12.12840 -11.80548 -11.42302 -11.37205 -11.02470 -10.83136 -10.78879 -10.31827 -10.07655 -9.50996 -9.36668 -8.93557 -8.36041 -7.95982 -7.40817 -5.99522 -4.06792 1.55120 2.01015 2.88151 3.32635 3.36913 3.40079 3.41179 4.35147 4.48242 4.91279 5.18724 5.31241 5.51978 5.65821 5.71801 5.91553 6.11051 6.23745 6.47888 6.75135 6.80106 6.88832 6.96515 7.13843 7.16290 7.22475 7.37860 7.71896 7.79762 7.97124 8.09842 8.38590 8.95173 9.57413 11.06158 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.035644 B = 0.009163 C = 0.008494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.356198 B = 3054.975804 C = 3295.565747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.071 3.929 3 H 0.037 0.963 4 C -0.509 4.509 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 C -0.016 4.016 13 C -0.099 4.099 14 C -0.132 4.132 15 C -0.108 4.108 16 C -0.138 4.138 17 C -0.224 4.224 18 C 0.000 4.000 19 O -0.188 6.188 20 C 0.049 3.951 21 H 0.008 0.992 22 H 0.030 0.970 23 H 0.087 0.913 24 H 0.261 0.739 25 H 0.134 0.866 26 H 0.119 0.881 27 H 0.115 0.885 28 H 0.149 0.851 29 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.316 -2.239 -10.399 11.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.053 3.947 3 H 0.056 0.944 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 C -0.016 4.016 13 C -0.117 4.117 14 C -0.150 4.150 15 C -0.126 4.126 16 C -0.138 4.138 17 C -0.243 4.243 18 C -0.065 4.065 19 O -0.089 6.089 20 C 0.002 3.998 21 H 0.027 0.973 22 H 0.049 0.951 23 H 0.105 0.895 24 H 0.071 0.929 25 H 0.152 0.848 26 H 0.137 0.863 27 H 0.133 0.867 28 H 0.167 0.833 29 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 3.169 -1.922 -10.042 10.704 hybrid contribution 0.538 -0.472 0.615 0.944 sum 3.707 -2.394 -9.427 10.408 Atomic orbital electron populations 1.21794 0.97354 0.99367 1.00353 1.17865 0.93025 0.95695 0.88151 0.94446 1.21075 1.31385 1.12420 0.89793 0.92420 1.24957 0.95013 0.94985 0.98926 1.69878 1.36541 1.22811 1.23543 0.86621 0.79252 0.79758 0.82183 1.20283 1.21258 1.20167 1.19705 0.93619 0.93321 0.94984 1.20845 1.00547 0.93149 0.97121 1.20974 0.99370 0.99572 0.95120 1.20226 1.00320 0.92314 0.99785 1.19900 1.02139 0.95549 0.96260 1.22378 1.06247 0.93175 1.02533 1.23860 0.96454 1.00037 0.86188 1.84058 1.55516 1.29551 1.39794 1.19644 1.00277 0.82663 0.97217 0.97288 0.95108 0.89486 0.92862 0.84830 0.86286 0.86717 0.83324 0.78370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 8.78 37.16 0.33 -2.90 15 2 C 0.07 1.85 2.48 -92.92 -0.23 1.62 15 3 H 0.04 1.07 7.79 -51.93 -0.40 0.67 15 4 C -0.51 -14.11 8.23 -34.44 -0.28 -14.39 15 5 H 0.06 1.59 7.60 -52.49 -0.40 1.19 15 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 15 7 N -0.89 -25.51 11.32 55.43 0.63 -24.88 15 8 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 15 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 12 C -0.02 -0.36 4.75 -104.52 -0.50 -0.86 15 13 C -0.10 -1.99 8.68 -39.54 -0.34 -2.34 15 14 C -0.13 -2.26 10.03 -39.58 -0.40 -2.66 15 15 C -0.11 -1.83 10.10 -39.33 -0.40 -2.23 15 16 C -0.14 -2.58 6.40 -105.16 -0.67 -3.26 15 17 C -0.22 -3.45 11.14 -37.62 -0.42 -3.87 15 18 C 0.00 0.01 11.96 29.24 0.35 0.36 15 19 O -0.19 -3.89 10.38 3.83 0.04 -3.85 15 20 C 0.05 1.06 7.05 -38.49 -0.27 0.79 15 21 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 15 22 H 0.03 0.70 7.38 -51.93 -0.38 0.32 15 23 H 0.09 2.33 6.07 -51.93 -0.32 2.01 15 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 15 25 H 0.13 2.64 7.55 -52.49 -0.40 2.24 15 26 H 0.12 1.64 8.06 -52.49 -0.42 1.21 15 27 H 0.11 1.57 8.06 -52.49 -0.42 1.15 15 28 H 0.15 1.76 8.06 -52.49 -0.42 1.34 15 29 H 0.20 2.02 8.06 -52.48 -0.42 1.60 15 LS Contribution 252.53 15.07 3.81 3.81 Total: -1.00 -30.42 252.53 -6.62 -37.04 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -3.15 Total: -0.37 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: -2.93 Total: -28.09 kcal Atomic # 7 Polarization: -25.51 SS G_CDS: 0.63 Total: -24.88 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: 0.04 Total: -3.85 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.42 -6.62 -37.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084345963.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.948 kcal (2) G-P(sol) polarization free energy of solvation -30.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds