Wall clock time and date at job start Mon Mar 30 2020 02:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47368 * 2 1 4 4 C 1.50701 * 109.47128 * 239.99562 * 2 1 3 5 5 H 1.07998 * 120.00647 * 239.99771 * 4 2 1 6 6 C 1.37884 * 119.99707 * 60.00546 * 4 2 1 7 7 N 1.31513 * 119.99828 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00149 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47071 * 59.99274 * 8 6 4 10 10 H 1.48494 * 109.47360 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46888 * 299.99723 * 8 6 4 12 12 C 1.50703 * 109.47287 * 120.00185 * 2 1 3 13 13 C 1.38743 * 119.79292 * 59.99645 * 12 2 1 14 14 C 1.37851 * 120.68551 * 180.02562 * 13 12 2 15 15 C 1.38942 * 119.81866 * 0.30104 * 14 13 12 16 16 O 1.34804 * 133.49361 * 180.40324 * 15 14 13 17 17 C 1.34453 * 110.88864 * 179.51755 * 16 15 14 18 18 C 1.34000 * 110.15546 * 359.75835 * 17 16 15 19 19 C 1.40497 * 119.22040 * 359.45353 * 15 14 13 20 20 C 1.36738 * 119.78873 * 240.02293 * 12 2 1 21 21 H 1.09003 * 109.46515 * 300.00144 * 1 2 3 22 22 H 1.08993 * 109.47046 * 59.99901 * 1 2 3 23 23 H 1.08998 * 109.47114 * 180.02562 * 1 2 3 24 24 H 0.97001 * 120.00103 * 180.02562 * 7 6 4 25 25 H 1.08000 * 119.65384 * 0.02562 * 13 12 2 26 26 H 1.08002 * 120.08749 * 180.02562 * 14 13 12 27 27 H 1.07998 * 124.92389 * 179.73872 * 17 16 15 28 28 H 1.07997 * 126.91088 * 179.97438 * 18 17 16 29 29 H 1.08002 * 120.14660 * 359.95369 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9429 0.8296 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.8257 -2.5203 -4.0076 10 1 1.8260 -0.4207 -5.2204 11 1 3.8063 -1.1210 -4.0082 12 6 2.0324 -0.7105 1.2305 13 6 1.6945 -2.0388 1.4457 14 6 2.1435 -2.7063 2.5652 15 6 2.9376 -2.0434 3.4928 16 8 3.5202 -2.4159 4.6499 17 6 4.2106 -1.3959 5.1892 18 6 4.1166 -0.3109 4.4084 19 6 3.2806 -0.6999 3.2664 20 6 2.8179 -0.0417 2.1279 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 0.7082 1.1609 -3.4844 25 1 1.0734 -2.5551 0.7288 26 1 1.8749 -3.7405 2.7230 27 1 4.7609 -1.4440 6.1172 28 1 4.5653 0.6555 4.5843 29 1 3.0784 0.9922 1.9558 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084345974.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:07 Heat of formation + Delta-G solvation = 17.243287 kcal Electronic energy + Delta-G solvation = -13713.957160 eV Core-core repulsion = 11375.118981 eV Total energy + Delta-G solvation = -2338.838178 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.94675 -37.81608 -34.03732 -32.32605 -31.19750 -29.01814 -27.88786 -25.13431 -22.79251 -22.26694 -20.87155 -19.74445 -17.01767 -16.65638 -15.82289 -15.64794 -15.07340 -14.23383 -13.63410 -13.26502 -12.72277 -12.53632 -12.33585 -11.89786 -11.78282 -11.26965 -10.90782 -10.73343 -10.48604 -10.29307 -10.06897 -9.76791 -9.48727 -9.01744 -8.38542 -7.77298 -7.62916 -6.02236 -4.09294 1.45301 2.06314 2.76709 3.19665 3.31171 3.35710 3.38883 4.34485 4.48317 4.86483 5.13178 5.28714 5.46407 5.67105 5.74308 6.00316 6.08506 6.22830 6.35055 6.70005 6.81862 6.84584 6.92777 7.09084 7.14555 7.31313 7.31941 7.67496 7.73285 7.94373 8.08171 8.37608 8.93074 9.55479 11.03333 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.048691 B = 0.007307 C = 0.007122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.915725 B = 3830.762566 C = 3930.494395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.073 3.927 3 H 0.035 0.965 4 C -0.509 4.509 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C -0.045 4.045 13 C -0.074 4.074 14 C -0.120 4.120 15 C 0.026 3.974 16 O -0.204 6.204 17 C -0.013 4.013 18 C -0.209 4.209 19 C -0.134 4.134 20 C -0.089 4.089 21 H 0.009 0.991 22 H 0.086 0.914 23 H 0.029 0.971 24 H 0.261 0.739 25 H 0.136 0.864 26 H 0.122 0.878 27 H 0.200 0.800 28 H 0.151 0.849 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.291 -3.182 10.941 11.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 H 0.054 0.946 4 C -0.547 4.547 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.721 3.279 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 C -0.045 4.045 13 C -0.092 4.092 14 C -0.138 4.138 15 C -0.020 4.020 16 O -0.106 6.106 17 C -0.078 4.078 18 C -0.229 4.229 19 C -0.135 4.135 20 C -0.107 4.107 21 H 0.028 0.972 22 H 0.105 0.895 23 H 0.048 0.952 24 H 0.071 0.929 25 H 0.154 0.846 26 H 0.140 0.860 27 H 0.216 0.784 28 H 0.169 0.831 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.175 -3.326 10.895 11.826 hybrid contribution 0.507 -0.225 -0.811 0.983 sum 3.682 -3.551 10.084 11.308 Atomic orbital electron populations 1.21795 0.97564 0.99337 1.00343 1.17883 0.92906 0.95430 0.88314 0.94646 1.21077 1.31317 1.12479 0.89865 0.92463 1.24954 0.95005 0.94980 0.98934 1.69873 1.36553 1.22855 1.23564 0.86636 0.79258 0.79785 0.82224 1.20209 1.21296 1.20263 1.20333 0.94154 0.93848 0.96208 1.20977 0.98548 0.94633 0.95017 1.19893 1.00527 0.99847 0.93553 1.19575 1.00491 0.94247 0.87702 1.83917 1.55701 1.38231 1.32732 1.23737 0.98487 0.85964 0.99575 1.22486 1.04607 1.00129 0.95649 1.19932 1.01974 0.94337 0.97281 1.20256 0.98353 0.99808 0.92261 0.97217 0.89550 0.95221 0.92863 0.84633 0.86022 0.78373 0.83141 0.86198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.78 37.16 0.33 -2.82 15 2 C 0.07 1.81 2.47 -92.92 -0.23 1.58 15 3 H 0.04 0.94 7.85 -51.93 -0.41 0.53 15 4 C -0.51 -13.68 8.23 -34.44 -0.28 -13.96 15 5 H 0.06 1.53 7.60 -52.49 -0.40 1.14 15 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 15 7 N -0.89 -24.93 11.32 55.43 0.63 -24.30 15 8 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 15 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 15 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 12 C -0.05 -0.99 4.70 -104.98 -0.49 -1.48 15 13 C -0.07 -1.47 8.67 -39.54 -0.34 -1.81 15 14 C -0.12 -2.15 10.07 -39.46 -0.40 -2.55 15 15 C 0.03 0.48 7.42 -38.47 -0.29 0.20 15 16 O -0.20 -3.35 10.58 3.91 0.04 -3.31 15 17 C -0.01 -0.17 11.96 29.24 0.35 0.18 15 18 C -0.21 -3.12 11.14 -37.62 -0.42 -3.54 15 19 C -0.13 -2.51 6.40 -105.16 -0.67 -3.19 15 20 C -0.09 -1.79 9.66 -39.69 -0.38 -2.18 15 21 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 15 22 H 0.09 2.24 6.07 -51.93 -0.32 1.93 15 23 H 0.03 0.66 7.36 -51.93 -0.38 0.28 15 24 H 0.26 7.01 8.31 -40.82 -0.34 6.67 15 25 H 0.14 2.62 7.54 -52.49 -0.40 2.23 15 26 H 0.12 1.84 8.06 -52.49 -0.42 1.41 15 27 H 0.20 1.61 8.06 -52.49 -0.42 1.18 15 28 H 0.15 1.81 8.06 -52.49 -0.42 1.39 15 29 H 0.12 2.29 7.92 -52.49 -0.42 1.87 15 LS Contribution 252.52 15.07 3.81 3.81 Total: -1.00 -29.20 252.52 -6.61 -35.81 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -3.14 Total: -0.03 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: -2.93 Total: -27.97 kcal Atomic # 7 Polarization: -24.93 SS G_CDS: 0.63 Total: -24.30 kcal Atomic # 8 Polarization: -3.35 SS G_CDS: 0.04 Total: -3.31 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.20 -6.61 -35.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084345974.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.054 kcal (2) G-P(sol) polarization free energy of solvation -29.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds