Wall clock time and date at job start Mon Mar 30 2020 02:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47368 * 2 1 4 4 C 1.50701 * 109.47128 * 239.99562 * 2 1 3 5 5 H 1.07998 * 120.00647 * 239.99771 * 4 2 1 6 6 C 1.37884 * 119.99707 * 60.00546 * 4 2 1 7 7 N 1.31513 * 119.99828 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00149 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47071 * 59.99274 * 8 6 4 10 10 H 1.48494 * 109.47360 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46888 * 299.99723 * 8 6 4 12 12 C 1.50703 * 109.47287 * 120.00185 * 2 1 3 13 13 C 1.38743 * 119.79292 * 59.99645 * 12 2 1 14 14 C 1.37851 * 120.68551 * 180.02562 * 13 12 2 15 15 C 1.38942 * 119.81866 * 0.30104 * 14 13 12 16 16 O 1.34804 * 133.49361 * 180.40324 * 15 14 13 17 17 C 1.34453 * 110.88864 * 179.51755 * 16 15 14 18 18 C 1.34000 * 110.15546 * 359.75835 * 17 16 15 19 19 C 1.40497 * 119.22040 * 359.45353 * 15 14 13 20 20 C 1.36738 * 119.78873 * 240.02293 * 12 2 1 21 21 H 1.09003 * 109.46515 * 300.00144 * 1 2 3 22 22 H 1.08993 * 109.47046 * 59.99901 * 1 2 3 23 23 H 1.08998 * 109.47114 * 180.02562 * 1 2 3 24 24 H 0.97001 * 120.00103 * 180.02562 * 7 6 4 25 25 H 1.08000 * 119.65384 * 0.02562 * 13 12 2 26 26 H 1.08002 * 120.08749 * 180.02562 * 14 13 12 27 27 H 1.07998 * 124.92389 * 179.73872 * 17 16 15 28 28 H 1.07997 * 126.91088 * 179.97438 * 18 17 16 29 29 H 1.08002 * 120.14660 * 359.95369 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9429 0.8296 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.8257 -2.5203 -4.0076 10 1 1.8260 -0.4207 -5.2204 11 1 3.8063 -1.1210 -4.0082 12 6 2.0324 -0.7105 1.2305 13 6 1.6945 -2.0388 1.4457 14 6 2.1435 -2.7063 2.5652 15 6 2.9376 -2.0434 3.4928 16 8 3.5202 -2.4159 4.6499 17 6 4.2106 -1.3959 5.1892 18 6 4.1166 -0.3109 4.4084 19 6 3.2806 -0.6999 3.2664 20 6 2.8179 -0.0417 2.1279 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 0.7082 1.1609 -3.4844 25 1 1.0734 -2.5551 0.7288 26 1 1.8749 -3.7405 2.7230 27 1 4.7609 -1.4440 6.1172 28 1 4.5653 0.6555 4.5843 29 1 3.0784 0.9922 1.9558 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084345974.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:07 Heat of formation + Delta-G solvation = 1.597436 kcal Electronic energy + Delta-G solvation = -13714.635615 eV Core-core repulsion = 11375.118981 eV Total energy + Delta-G solvation = -2339.516633 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.23253 -39.35748 -35.90203 -33.63418 -33.05879 -30.44250 -29.45195 -27.19857 -24.37763 -23.73389 -22.12570 -21.44271 -18.54419 -18.17915 -17.46500 -16.94266 -16.83721 -15.98357 -15.01830 -14.90667 -14.31964 -13.98334 -13.76452 -13.52648 -13.42103 -13.15615 -12.80017 -12.52933 -12.18798 -12.14524 -11.80719 -11.32819 -11.04588 -11.00239 -10.46115 -9.22639 -9.05686 -8.08826 -6.23086 0.10238 0.55453 1.43706 1.44375 1.52282 1.55512 1.98040 2.43734 2.89978 3.18951 3.67407 3.85868 4.21540 4.23871 4.48962 4.56099 4.66566 4.80288 4.88057 5.04273 5.10820 5.23384 5.35376 5.46169 5.51132 5.61214 5.68140 5.81155 6.05732 6.08024 6.31099 6.37927 6.84961 7.44781 8.95493 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.048691 B = 0.007307 C = 0.007122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.915725 B = 3830.762566 C = 3930.494395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.074 3.926 3 H 0.004 0.996 4 C -0.523 4.523 5 H 0.052 0.948 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.954 3.046 9 H -0.269 1.269 10 H -0.283 1.283 11 H -0.275 1.275 12 C -0.068 4.068 13 C -0.091 4.091 14 C -0.107 4.107 15 C 0.011 3.989 16 O -0.207 6.207 17 C 0.015 3.985 18 C -0.231 4.231 19 C -0.148 4.148 20 C -0.104 4.104 21 H 0.023 0.977 22 H 0.061 0.939 23 H 0.036 0.964 24 H 0.262 0.738 25 H 0.134 0.866 26 H 0.152 0.848 27 H 0.257 0.743 28 H 0.176 0.824 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.458 -4.502 12.689 14.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.055 3.945 3 H 0.022 0.978 4 C -0.561 4.561 5 H 0.070 0.930 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.780 3.220 9 H -0.194 1.194 10 H -0.209 1.209 11 H -0.200 1.200 12 C -0.068 4.068 13 C -0.109 4.109 14 C -0.126 4.126 15 C -0.036 4.036 16 O -0.109 6.109 17 C -0.049 4.049 18 C -0.250 4.250 19 C -0.148 4.148 20 C -0.123 4.123 21 H 0.042 0.958 22 H 0.079 0.921 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.152 0.848 26 H 0.170 0.830 27 H 0.272 0.728 28 H 0.194 0.806 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.343 -4.650 12.654 14.164 hybrid contribution 0.216 0.196 -1.189 1.225 sum 4.559 -4.454 11.465 13.117 Atomic orbital electron populations 1.21633 0.97146 0.99513 0.99690 1.17731 0.93331 0.93874 0.89532 0.97781 1.21343 1.31232 1.12433 0.91054 0.92962 1.25707 0.95209 0.95674 1.01738 1.70003 1.37473 1.24021 1.24118 0.85665 0.78629 0.78958 0.78747 1.19358 1.20887 1.20039 1.20110 0.95973 0.94908 0.95777 1.20920 0.99718 0.94021 0.96245 1.20109 0.99130 1.00968 0.92356 1.19757 1.00900 0.94285 0.88635 1.83953 1.55750 1.39362 1.31812 1.24831 0.95896 0.84114 1.00039 1.22839 1.05170 1.02242 0.94736 1.20305 1.02187 0.94751 0.97599 1.20270 0.98878 0.99948 0.93165 0.95826 0.92052 0.94517 0.92872 0.84799 0.82994 0.72751 0.80614 0.86433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.98 8.78 71.98 0.63 -5.35 15 2 C 0.07 3.79 2.47 -12.28 -0.03 3.76 15 3 H 0.00 0.23 7.85 -2.39 -0.02 0.21 15 4 C -0.52 -28.81 8.23 25.60 0.21 -28.59 15 5 H 0.05 2.86 7.60 -2.91 -0.02 2.84 15 6 C 0.02 0.85 5.30 84.66 0.45 1.30 15 7 N -0.92 -52.69 11.32 21.45 0.24 -52.45 15 8 Si 0.95 43.50 29.54 68.60 2.03 45.52 15 9 H -0.27 -11.82 7.11 99.48 0.71 -11.11 15 10 H -0.28 -12.64 7.11 99.48 0.71 -11.94 15 11 H -0.27 -12.35 7.11 99.48 0.71 -11.65 15 12 C -0.07 -3.02 4.70 -20.09 -0.09 -3.11 15 13 C -0.09 -3.63 8.67 22.30 0.19 -3.44 15 14 C -0.11 -3.71 10.07 22.35 0.23 -3.48 15 15 C 0.01 0.38 7.42 22.99 0.17 0.55 15 16 O -0.21 -6.06 10.58 -8.92 -0.09 -6.16 15 17 C 0.02 0.33 11.96 66.85 0.80 1.13 15 18 C -0.23 -6.17 11.14 23.54 0.26 -5.91 15 19 C -0.15 -5.34 6.40 -20.21 -0.13 -5.47 15 20 C -0.10 -4.30 9.66 22.20 0.21 -4.09 15 21 H 0.02 1.03 8.14 -2.39 -0.02 1.01 15 22 H 0.06 3.30 6.07 -2.39 -0.01 3.28 15 23 H 0.04 1.68 7.36 -2.39 -0.02 1.66 15 24 H 0.26 14.34 8.31 -92.71 -0.77 13.57 15 25 H 0.13 5.24 7.54 -2.91 -0.02 5.22 15 26 H 0.15 4.19 8.06 -2.91 -0.02 4.17 15 27 H 0.26 2.40 8.06 -2.91 -0.02 2.38 15 28 H 0.18 3.66 8.06 -2.91 -0.02 3.64 15 29 H 0.12 4.70 7.92 -2.91 -0.02 4.67 15 Total: -1.00 -64.04 252.52 6.22 -57.82 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: 1.14 Total: 7.96 kcal Atomic # 6 Polarization: -55.60 SS G_CDS: 2.90 Total: -52.70 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 0.24 Total: -52.45 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.09 Total: -6.16 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -64.04 6.22 -57.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084345974.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.416 kcal (2) G-P(sol) polarization free energy of solvation -64.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds