Wall clock time and date at job start Mon Mar 30 2020 03:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48496 * 109.47319 * 239.99985 * 3 2 1 5 5 H 1.48503 * 109.46734 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47266 * 119.99799 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 N 1.46901 * 109.47121 * 59.99793 * 9 7 2 12 12 C 1.50701 * 109.47269 * 179.97438 * 9 7 2 13 13 C 1.34246 * 126.50226 * 265.02638 * 12 9 7 14 14 N 1.36824 * 109.92767 * 179.97438 * 13 12 9 15 15 H 0.96998 * 125.05950 * 180.02562 * 14 13 12 16 16 C 1.37685 * 109.87784 * 359.97438 * 14 13 12 17 17 C 1.39123 * 133.50602 * 180.02562 * 16 14 13 18 18 C 1.37753 * 119.77536 * 179.26166 * 17 16 14 19 19 C 1.38831 * 120.66632 * 0.63937 * 18 17 16 20 20 C 1.36624 * 120.52633 * 359.58087 * 19 18 17 21 21 C 1.39628 * 119.76748 * 0.02562 * 20 19 18 22 22 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 23 23 H 1.00898 * 111.00245 * 59.99841 * 11 9 7 24 24 H 1.00904 * 111.00313 * 183.95658 * 11 9 7 25 25 H 1.08000 * 125.02649 * 359.92319 * 13 12 9 26 26 H 1.07999 * 120.11046 * 359.97438 * 17 16 14 27 27 H 1.07999 * 119.66885 * 180.23547 * 18 17 16 28 28 H 1.08000 * 119.73630 * 179.59807 * 19 18 17 29 29 H 1.08003 * 120.11553 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 0.4069 -2.5772 -1.1992 12 6 2.2304 -3.6446 0.0005 13 6 2.6782 -4.3124 -1.0745 14 7 3.5565 -5.2868 -0.6857 15 1 4.0114 -5.8985 -1.2856 16 6 3.6993 -5.2690 0.6836 17 6 4.4500 -6.0252 1.5781 18 6 4.3895 -5.7490 2.9263 19 6 3.5760 -4.7308 3.4047 20 6 2.8270 -3.9788 2.5444 21 6 2.8793 -4.2362 1.1730 22 1 -0.4850 0.8400 -0.0004 23 1 0.9652 -2.5259 -2.0381 24 1 -0.1571 -3.4138 -1.1907 25 1 2.3874 -4.1108 -2.0949 26 1 5.0868 -6.8186 1.2157 27 1 4.9759 -6.3346 3.6188 28 1 3.5351 -4.5314 4.4653 29 1 2.1968 -3.1880 2.9237 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084346003.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:23 Heat of formation + Delta-G solvation = 37.052915 kcal Electronic energy + Delta-G solvation = -13837.172059 eV Core-core repulsion = 11531.485642 eV Total energy + Delta-G solvation = -2305.686417 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.01838 -37.80144 -36.38955 -33.65832 -32.11377 -30.23230 -29.13758 -27.90870 -24.17761 -23.63993 -22.47040 -20.02646 -18.67578 -18.40301 -17.10208 -16.53612 -16.22182 -15.89016 -15.21375 -14.90440 -14.63072 -14.39571 -14.19929 -13.57539 -12.98581 -12.72288 -12.65523 -12.46681 -12.30105 -11.89432 -11.64585 -11.33891 -10.53406 -10.28661 -9.03367 -8.89852 -8.39055 -7.90546 -6.13888 0.31810 0.80615 1.43161 1.44444 1.51911 1.94067 2.37842 2.51128 3.10102 3.28917 3.96742 4.10759 4.28236 4.40344 4.46138 4.59092 4.69734 4.87025 5.04694 5.17285 5.22879 5.51453 5.67829 5.78216 5.80137 5.96353 5.98161 6.30383 6.35925 6.72607 6.90158 7.17454 7.34160 7.58034 9.09623 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.034119 B = 0.009137 C = 0.008149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.471649 B = 3063.624439 C = 3435.243183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.035 3.965 3 Si 0.944 3.056 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.277 1.277 7 C -0.535 4.535 8 H 0.037 0.963 9 C 0.295 3.705 10 H -0.003 1.003 11 N -0.818 5.818 12 C -0.192 4.192 13 C 0.031 3.969 14 N -0.585 5.585 15 H 0.428 0.572 16 C 0.080 3.920 17 C -0.136 4.136 18 C -0.102 4.102 19 C -0.156 4.156 20 C -0.091 4.091 21 C -0.137 4.137 22 H 0.255 0.745 23 H 0.324 0.676 24 H 0.311 0.689 25 H 0.182 0.818 26 H 0.149 0.851 27 H 0.159 0.841 28 H 0.140 0.860 29 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.578 -12.352 0.974 15.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.168 4.168 3 Si 0.770 3.230 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.203 1.203 7 C -0.574 4.574 8 H 0.055 0.945 9 C 0.184 3.816 10 H 0.015 0.985 11 N -0.345 5.345 12 C -0.201 4.201 13 C -0.094 4.094 14 N -0.190 5.190 15 H 0.268 0.732 16 C -0.028 4.028 17 C -0.156 4.156 18 C -0.121 4.121 19 C -0.175 4.175 20 C -0.110 4.110 21 C -0.142 4.142 22 H 0.064 0.936 23 H 0.136 0.864 24 H 0.122 0.878 25 H 0.199 0.801 26 H 0.167 0.833 27 H 0.177 0.823 28 H 0.158 0.842 29 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.093 -11.618 1.102 14.201 hybrid contribution 0.750 0.175 -0.492 0.914 sum 8.844 -11.442 0.610 14.474 Atomic orbital electron populations 1.70221 1.06923 1.26271 1.48371 1.25653 0.95401 1.01557 0.94184 0.85868 0.78564 0.80028 0.78520 1.19791 1.20808 1.20278 1.21075 0.91667 0.91342 1.53334 0.94471 1.17056 0.86790 0.88555 0.89197 0.98492 1.58959 1.28398 1.43096 1.04063 1.22090 1.04740 1.01164 0.92089 1.21571 0.95969 0.92697 0.99189 1.41496 1.40607 1.32029 1.04882 0.73241 1.18600 1.00682 0.98952 0.84559 1.20365 1.01603 1.01383 0.92278 1.21167 0.98700 0.97470 0.94733 1.20876 0.98954 0.97679 0.99996 1.20472 0.99419 0.99135 0.91968 1.19544 1.01537 0.98953 0.94188 0.93632 0.86397 0.87778 0.80131 0.83285 0.82306 0.84235 0.88324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.22 12.77 21.45 0.27 -52.94 15 2 C 0.04 2.03 5.39 84.65 0.46 2.48 15 3 Si 0.94 45.30 29.54 68.60 2.03 47.32 15 4 H -0.27 -12.70 7.11 99.48 0.71 -11.99 15 5 H -0.28 -13.20 7.11 99.48 0.71 -12.49 15 6 H -0.28 -13.12 7.11 99.48 0.71 -12.41 15 7 C -0.54 -30.94 8.71 25.60 0.22 -30.72 15 8 H 0.04 2.19 7.74 -2.91 -0.02 2.17 15 9 C 0.29 15.51 3.13 43.42 0.14 15.65 15 10 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 15 11 N -0.82 -39.14 8.30 -174.95 -1.45 -40.59 15 12 C -0.19 -8.57 5.36 -18.63 -0.10 -8.67 15 13 C 0.03 1.09 11.10 83.00 0.92 2.01 15 14 N -0.58 -17.23 6.07 -187.61 -1.14 -18.37 15 15 H 0.43 8.69 8.96 -92.71 -0.83 7.86 15 16 C 0.08 2.71 7.28 39.03 0.28 3.00 15 17 C -0.14 -3.62 10.08 22.37 0.23 -3.39 15 18 C -0.10 -2.59 10.01 22.30 0.22 -2.37 15 19 C -0.16 -4.78 9.97 22.03 0.22 -4.56 15 20 C -0.09 -3.65 10.05 22.23 0.22 -3.42 15 21 C -0.14 -5.76 6.35 -20.20 -0.13 -5.89 15 22 H 0.25 14.68 8.31 -92.71 -0.77 13.91 15 23 H 0.32 14.24 7.96 -89.70 -0.71 13.53 15 24 H 0.31 13.28 9.06 -89.69 -0.81 12.47 15 25 H 0.18 5.43 7.31 -2.91 -0.02 5.40 15 26 H 0.15 2.80 8.06 -2.91 -0.02 2.78 15 27 H 0.16 2.70 8.06 -2.91 -0.02 2.68 15 28 H 0.14 3.46 8.06 -2.91 -0.02 3.44 15 29 H 0.10 4.26 8.06 -2.91 -0.02 4.23 15 Total: -1.00 -70.31 255.15 1.23 -69.08 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: -1.16 Total: 31.38 kcal Atomic # 6 Polarization: -38.57 SS G_CDS: 2.68 Total: -35.88 kcal Atomic # 7 Polarization: -109.58 SS G_CDS: -2.32 Total: -111.90 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -70.31 1.23 -69.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084346003.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.130 kcal (2) G-P(sol) polarization free energy of solvation -70.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds