Wall clock time and date at job start Mon Mar 30 2020 03:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86808 * 119.99974 * 2 1 4 4 H 1.48497 * 109.47184 * 270.00278 * 3 2 1 5 5 H 1.48500 * 109.46627 * 30.00501 * 3 2 1 6 6 H 1.48504 * 109.47031 * 150.00017 * 3 2 1 7 7 C 1.37877 * 120.00537 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99537 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00717 * 179.97438 * 7 2 1 10 10 H 1.09008 * 109.46931 * 59.99157 * 9 7 2 11 11 N 1.46904 * 109.46991 * 300.00151 * 9 7 2 12 12 C 1.50695 * 109.47583 * 179.97438 * 9 7 2 13 13 C 1.34234 * 126.50486 * 100.28945 * 12 9 7 14 14 N 1.36830 * 109.93384 * 180.19022 * 13 12 9 15 15 H 0.97001 * 125.06783 * 179.82141 * 14 13 12 16 16 C 1.37689 * 109.86882 * 359.54926 * 14 13 12 17 17 C 1.39134 * 133.50571 * 180.26034 * 16 14 13 18 18 C 1.37745 * 119.77479 * 180.02562 * 17 16 14 19 19 C 1.38830 * 120.67221 * 0.02562 * 18 17 16 20 20 C 1.36628 * 120.52453 * 359.97438 * 19 18 17 21 21 C 1.39628 * 119.76381 * 359.97438 * 20 19 18 22 22 H 0.96997 * 120.00749 * 359.97438 * 1 2 3 23 23 H 1.00903 * 110.99801 * 176.04451 * 11 9 7 24 24 H 1.00897 * 110.99740 * 299.99463 * 11 9 7 25 25 H 1.07999 * 125.03333 * 0.02757 * 13 12 9 26 26 H 1.08000 * 120.10688 * 359.97438 * 17 16 14 27 27 H 1.08006 * 119.66035 * 180.02562 * 18 17 16 28 28 H 1.07995 * 119.73797 * 180.02562 * 19 18 17 29 29 H 1.07999 * 120.11413 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8752 -0.6802 0.8888 11 7 4.0007 -0.5012 -1.2006 12 6 4.0139 -2.6148 -0.0010 13 6 4.4614 -3.3036 -1.0626 14 7 4.8291 -4.5646 -0.6793 15 1 5.1807 -5.2471 -1.2722 16 6 4.6313 -4.7185 0.6746 17 6 4.8387 -5.7722 1.5592 18 6 4.5342 -5.6152 2.8934 19 6 4.0211 -4.4150 3.3663 20 6 3.8095 -3.3674 2.5151 21 6 4.1122 -3.5042 1.1589 22 1 -0.4851 0.8400 0.0004 23 1 5.0073 -0.4312 -1.1924 24 1 3.6769 -0.9586 -2.0396 25 1 4.5199 -2.9203 -2.0706 26 1 5.2363 -6.7102 1.2008 27 1 4.6963 -6.4342 3.5786 28 1 3.7880 -4.3083 4.4154 29 1 3.4097 -2.4368 2.8900 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084346007.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:25 Heat of formation + Delta-G solvation = 33.373763 kcal Electronic energy + Delta-G solvation = -13886.584672 eV Core-core repulsion = 11580.738715 eV Total energy + Delta-G solvation = -2305.845957 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.06223 -37.86109 -36.60161 -33.96985 -32.27038 -30.27014 -29.22516 -28.26624 -24.00753 -23.66586 -22.50412 -19.99567 -18.96315 -18.68791 -17.16499 -16.63004 -16.29104 -15.83983 -15.27912 -15.10932 -14.72106 -14.59235 -14.38399 -13.70075 -13.10844 -12.69560 -12.59192 -12.44127 -12.32738 -11.82177 -11.67620 -11.46502 -10.72097 -10.33171 -9.36046 -9.05105 -8.40649 -8.20142 -6.32201 0.29912 0.78669 1.52677 1.59617 1.73710 1.89377 2.35355 2.56011 3.07531 3.13859 3.93917 4.06084 4.23398 4.25780 4.35558 4.53700 4.65184 4.80957 4.97004 5.07105 5.16388 5.31702 5.59287 5.66487 5.77850 5.88607 5.96907 6.20141 6.33675 6.55908 6.81599 6.86588 7.06523 7.43921 8.93463 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.038098 B = 0.009428 C = 0.008406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.763740 B = 2969.081970 C = 3330.022920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.024 3.976 3 Si 1.003 2.997 4 H -0.272 1.272 5 H -0.325 1.325 6 H -0.264 1.264 7 C -0.505 4.505 8 H 0.020 0.980 9 C 0.260 3.740 10 H 0.028 0.972 11 N -0.842 5.842 12 C -0.191 4.191 13 C 0.037 3.963 14 N -0.585 5.585 15 H 0.429 0.571 16 C 0.080 3.920 17 C -0.136 4.136 18 C -0.102 4.102 19 C -0.156 4.156 20 C -0.092 4.092 21 C -0.135 4.135 22 H 0.263 0.737 23 H 0.334 0.666 24 H 0.341 0.659 25 H 0.189 0.811 26 H 0.150 0.850 27 H 0.159 0.841 28 H 0.139 0.861 29 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.543 -10.407 0.676 17.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.174 4.174 3 Si 0.833 3.167 4 H -0.198 1.198 5 H -0.256 1.256 6 H -0.189 1.189 7 C -0.543 4.543 8 H 0.038 0.962 9 C 0.150 3.850 10 H 0.046 0.954 11 N -0.373 5.373 12 C -0.200 4.200 13 C -0.088 4.088 14 N -0.190 5.190 15 H 0.269 0.731 16 C -0.028 4.028 17 C -0.156 4.156 18 C -0.121 4.121 19 C -0.175 4.175 20 C -0.111 4.111 21 C -0.141 4.141 22 H 0.072 0.928 23 H 0.147 0.853 24 H 0.155 0.845 25 H 0.206 0.794 26 H 0.167 0.833 27 H 0.176 0.824 28 H 0.157 0.843 29 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 13.043 -9.762 0.794 16.311 hybrid contribution 0.161 -0.198 -0.488 0.551 sum 13.204 -9.961 0.306 16.543 Atomic orbital electron populations 1.70099 1.08612 1.28049 1.52555 1.25889 0.95174 1.03619 0.92764 0.84802 0.77242 0.76392 0.78256 1.19759 1.25567 1.18874 1.20992 0.90440 0.92149 1.50758 0.96166 1.17557 0.92366 0.85072 0.90053 0.95399 1.58992 1.14712 1.58130 1.05426 1.21602 1.06604 0.99043 0.92726 1.21651 1.03061 0.84748 0.99339 1.41509 1.57943 1.13257 1.06253 0.73117 1.18588 1.02927 0.96299 0.85021 1.20371 1.05455 0.97240 0.92557 1.21171 0.98341 0.97736 0.94888 1.20889 1.02929 0.93518 1.00173 1.20498 0.98868 0.99562 0.92194 1.19510 1.05134 0.94995 0.94429 0.92798 0.85285 0.84459 0.79447 0.83274 0.82372 0.84288 0.88065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.68 13.96 21.45 0.30 -61.39 15 2 C 0.02 1.42 5.47 84.66 0.46 1.88 15 3 Si 1.00 50.44 26.03 68.60 1.79 52.23 15 4 H -0.27 -13.18 7.11 99.48 0.71 -12.47 15 5 H -0.33 -16.51 7.11 99.48 0.71 -15.80 15 6 H -0.26 -12.69 6.54 99.48 0.65 -12.04 15 7 C -0.50 -29.80 9.29 25.60 0.24 -29.56 15 8 H 0.02 1.35 7.98 -2.91 -0.02 1.33 15 9 C 0.26 12.38 2.63 43.42 0.11 12.49 15 10 H 0.03 1.43 7.20 -2.38 -0.02 1.41 15 11 N -0.84 -33.64 6.45 -174.95 -1.13 -34.77 15 12 C -0.19 -8.01 5.40 -18.63 -0.10 -8.11 15 13 C 0.04 1.22 11.06 83.00 0.92 2.14 15 14 N -0.58 -16.31 6.07 -187.61 -1.14 -17.45 15 15 H 0.43 8.11 8.96 -92.71 -0.83 7.28 15 16 C 0.08 2.62 7.28 39.03 0.28 2.90 15 17 C -0.14 -3.57 10.08 22.37 0.23 -3.34 15 18 C -0.10 -2.60 10.01 22.29 0.22 -2.37 15 19 C -0.16 -4.76 9.97 22.03 0.22 -4.54 15 20 C -0.09 -3.63 10.05 22.23 0.22 -3.41 15 21 C -0.14 -5.53 6.35 -20.20 -0.13 -5.66 15 22 H 0.26 16.03 8.31 -92.71 -0.77 15.26 15 23 H 0.33 11.02 9.06 -89.69 -0.81 10.21 15 24 H 0.34 12.71 8.00 -89.70 -0.72 11.99 15 25 H 0.19 4.87 7.31 -2.91 -0.02 4.85 15 26 H 0.15 2.76 8.06 -2.91 -0.02 2.73 15 27 H 0.16 2.70 8.06 -2.91 -0.02 2.68 15 28 H 0.14 3.46 8.06 -2.91 -0.02 3.44 15 29 H 0.10 4.25 8.06 -2.91 -0.02 4.23 15 Total: -1.00 -75.13 249.92 1.27 -73.86 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: -1.22 Total: 25.10 kcal Atomic # 6 Polarization: -40.26 SS G_CDS: 2.68 Total: -37.58 kcal Atomic # 7 Polarization: -111.64 SS G_CDS: -1.97 Total: -113.61 kcal Atomic # 14 Polarization: 50.44 SS G_CDS: 1.79 Total: 52.23 kcal Total: -75.13 1.27 -73.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084346007.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.234 kcal (2) G-P(sol) polarization free energy of solvation -75.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds