Wall clock time and date at job start Mon Mar 30 2020 02:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31286 * 1 3 3 Si 1.86802 * 120.00297 * 2 1 4 4 H 1.48498 * 109.47274 * 85.45045 * 3 2 1 5 5 H 1.48499 * 109.47464 * 205.45395 * 3 2 1 6 6 H 1.48505 * 109.46897 * 325.45005 * 3 2 1 7 7 C 1.39045 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00050 * 165.91688 * 7 2 1 9 9 N 1.37142 * 119.99893 * 345.92413 * 7 2 1 10 10 C 1.35730 * 124.69591 * 339.17915 * 9 7 2 11 11 C 1.37848 * 109.47754 * 179.82494 * 10 9 7 12 12 C 1.41736 * 126.89653 * 180.18830 * 11 10 9 13 13 O 1.21407 * 119.99992 * 180.28397 * 12 11 10 14 14 C 1.47628 * 106.20943 * 0.41779 * 11 10 9 15 15 C 1.39239 * 134.16507 * 179.71700 * 14 11 10 16 16 C 1.38449 * 118.06809 * 180.02562 * 15 14 11 17 17 C 1.38545 * 119.27628 * 0.02562 * 16 15 14 18 18 N 1.31634 * 121.51347 * 359.97438 * 17 16 15 19 19 C 1.32622 * 121.72919 * 359.97438 * 18 17 16 20 20 H 0.97005 * 119.99868 * 359.97438 * 1 2 3 21 21 H 1.08006 * 125.25764 * 359.95998 * 10 9 7 22 22 H 1.08001 * 119.99748 * 0.27780 * 12 11 10 23 23 H 1.07998 * 120.96771 * 0.05516 * 15 14 11 24 24 H 1.07994 * 120.36460 * 180.02562 * 16 15 14 25 25 H 1.08001 * 119.23994 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.3983 2.1019 1.3956 5 1 3.5893 1.4143 -0.6017 6 1 1.4958 2.6230 -0.7941 7 6 2.0081 -1.2042 0.0005 8 1 3.0638 -1.2183 -0.2270 9 7 1.3532 -2.3739 0.2899 10 6 0.1781 -2.4550 0.9643 11 6 -0.1976 -3.7766 1.0757 12 6 -1.3630 -4.2797 1.7062 13 8 -1.5689 -5.4758 1.7359 14 6 0.8604 -4.5632 0.4114 15 6 1.0665 -5.9230 0.1939 16 6 2.2081 -6.3079 -0.4883 17 6 3.0957 -5.3379 -0.9253 18 7 2.8784 -4.0581 -0.7073 19 6 1.8013 -3.6338 -0.0602 20 1 -0.4850 0.8401 0.0004 21 1 -0.3778 -1.6139 1.3516 22 1 -2.0679 -3.5990 2.1603 23 1 0.3563 -6.6561 0.5467 24 1 2.4047 -7.3527 -0.6778 25 1 3.9858 -5.6388 -1.4578 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085607298.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:05 Heat of formation + Delta-G solvation = 29.225177 kcal Electronic energy + Delta-G solvation = -13637.332584 eV Core-core repulsion = 11195.473636 eV Total energy + Delta-G solvation = -2441.858948 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.64237 -37.60330 -37.16923 -33.55592 -31.94927 -29.91144 -28.55413 -25.86977 -23.16771 -22.61524 -21.29709 -18.92991 -18.06952 -16.53585 -15.61992 -15.10619 -15.06772 -14.31332 -14.27518 -13.65622 -13.39751 -12.88979 -12.47446 -12.12007 -12.03711 -11.72226 -11.48365 -11.00120 -10.79507 -10.65413 -9.60940 -9.27518 -8.98509 -8.38133 -7.75099 -7.25792 -6.96766 -4.65380 1.71831 2.13156 2.66177 2.91362 2.97015 2.98709 3.57809 4.09365 4.16465 4.60984 4.88690 5.31061 5.56122 5.58861 5.82716 5.89039 6.07457 6.39852 6.52290 6.74731 6.85066 6.88562 7.09116 7.19691 7.46676 7.62620 8.09874 8.51633 8.60433 8.68558 9.14129 9.95104 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.031725 B = 0.011035 C = 0.008325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.371083 B = 2536.688349 C = 3362.466982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.044 3.956 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.261 1.261 6 H -0.274 1.274 7 C -0.335 4.335 8 H 0.119 0.881 9 N -0.252 5.252 10 C 0.155 3.845 11 C -0.360 4.360 12 C 0.410 3.590 13 O -0.526 6.526 14 C -0.098 4.098 15 C -0.046 4.046 16 C -0.209 4.209 17 C 0.093 3.907 18 N -0.475 5.475 19 C 0.226 3.774 20 H 0.288 0.712 21 H 0.189 0.811 22 H 0.075 0.925 23 H 0.129 0.871 24 H 0.123 0.877 25 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.602 -1.030 0.961 2.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.167 4.167 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.185 1.185 6 H -0.199 1.199 7 C -0.463 4.463 8 H 0.137 0.863 9 N 0.086 4.914 10 C 0.007 3.993 11 C -0.367 4.367 12 C 0.278 3.722 13 O -0.408 6.408 14 C -0.105 4.105 15 C -0.073 4.073 16 C -0.230 4.230 17 C -0.074 4.074 18 N -0.186 5.186 19 C -0.005 4.005 20 H 0.098 0.902 21 H 0.205 0.795 22 H 0.092 0.908 23 H 0.147 0.853 24 H 0.141 0.859 25 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.102 -0.520 0.571 2.239 hybrid contribution -0.217 0.378 0.073 0.442 sum 1.885 -0.142 0.644 1.996 Atomic orbital electron populations 1.69776 1.06536 1.29971 1.40903 1.25670 0.95802 1.01067 0.94128 0.85551 0.79585 0.78522 0.79164 1.19221 1.18513 1.19945 1.20274 0.95790 0.81650 1.48543 0.86307 1.40062 1.15400 1.03298 1.32659 1.22886 0.87442 0.96687 0.92315 1.19921 1.03074 0.92673 1.21078 1.21316 0.85159 0.89638 0.76073 1.90409 1.76550 1.19606 1.54255 1.19500 0.95895 0.93093 1.01973 1.20865 0.96315 0.94230 0.95849 1.21709 0.97068 0.99995 1.04234 1.22097 0.98991 0.86635 0.99687 1.66248 1.19971 1.18141 1.14283 1.18685 0.93782 0.86201 1.01785 0.90157 0.79479 0.90843 0.85330 0.85886 0.83655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -19.75 10.94 55.50 0.61 -19.14 15 2 C 0.04 1.01 5.31 -17.49 -0.09 0.92 15 3 Si 0.95 17.72 29.58 -169.99 -5.03 12.69 15 4 H -0.27 -4.88 7.11 56.52 0.40 -4.48 15 5 H -0.26 -4.89 7.11 56.52 0.40 -4.49 15 6 H -0.27 -5.05 7.11 56.52 0.40 -4.65 15 7 C -0.33 -8.39 9.98 -14.88 -0.15 -8.54 15 8 H 0.12 2.97 7.87 -52.49 -0.41 2.55 15 9 N -0.25 -6.42 2.88 -60.78 -0.17 -6.60 15 10 C 0.15 3.63 9.88 -15.97 -0.16 3.47 15 11 C -0.36 -8.26 6.12 -104.87 -0.64 -8.90 15 12 C 0.41 8.44 11.44 32.07 0.37 8.81 15 13 O -0.53 -12.06 16.87 5.45 0.09 -11.97 15 14 C -0.10 -2.35 6.24 -104.88 -0.65 -3.00 15 15 C -0.05 -0.98 9.91 -39.13 -0.39 -1.36 15 16 C -0.21 -3.82 10.11 -39.39 -0.40 -4.22 15 17 C 0.09 1.80 11.15 -17.52 -0.20 1.61 15 18 N -0.48 -11.20 10.38 -12.20 -0.13 -11.32 15 19 C 0.23 5.69 7.78 -155.09 -1.21 4.49 15 20 H 0.29 6.15 8.31 -40.82 -0.34 5.81 15 21 H 0.19 4.16 6.41 -52.48 -0.34 3.82 15 22 H 0.08 1.24 8.06 -52.49 -0.42 0.81 15 23 H 0.13 2.59 7.46 -52.49 -0.39 2.20 15 24 H 0.12 1.77 8.06 -52.49 -0.42 1.34 15 25 H 0.15 2.21 8.06 -52.49 -0.42 1.79 15 LS Contribution 234.11 15.07 3.53 3.53 Total: -1.00 -28.66 234.11 -6.16 -34.82 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -1.54 Total: 4.72 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -3.52 Total: -6.73 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.31 Total: -37.06 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -28.66 -6.16 -34.82 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085607298.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.047 kcal (2) G-P(sol) polarization free energy of solvation -28.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds