Wall clock time and date at job start Mon Mar 30 2020 02:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31286 * 1 3 3 Si 1.86802 * 120.00297 * 2 1 4 4 H 1.48498 * 109.47274 * 85.45045 * 3 2 1 5 5 H 1.48499 * 109.47464 * 205.45395 * 3 2 1 6 6 H 1.48505 * 109.46897 * 325.45005 * 3 2 1 7 7 C 1.39045 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00050 * 165.91688 * 7 2 1 9 9 N 1.37142 * 119.99893 * 345.92413 * 7 2 1 10 10 C 1.35730 * 124.69591 * 339.17915 * 9 7 2 11 11 C 1.37848 * 109.47754 * 179.82494 * 10 9 7 12 12 C 1.41736 * 126.89653 * 180.18830 * 11 10 9 13 13 O 1.21407 * 119.99992 * 180.28397 * 12 11 10 14 14 C 1.47628 * 106.20943 * 0.41779 * 11 10 9 15 15 C 1.39239 * 134.16507 * 179.71700 * 14 11 10 16 16 C 1.38449 * 118.06809 * 180.02562 * 15 14 11 17 17 C 1.38545 * 119.27628 * 0.02562 * 16 15 14 18 18 N 1.31634 * 121.51347 * 359.97438 * 17 16 15 19 19 C 1.32622 * 121.72919 * 359.97438 * 18 17 16 20 20 H 0.97005 * 119.99868 * 359.97438 * 1 2 3 21 21 H 1.08006 * 125.25764 * 359.95998 * 10 9 7 22 22 H 1.08001 * 119.99748 * 0.27780 * 12 11 10 23 23 H 1.07998 * 120.96771 * 0.05516 * 15 14 11 24 24 H 1.07994 * 120.36460 * 180.02562 * 16 15 14 25 25 H 1.08001 * 119.23994 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.3983 2.1019 1.3956 5 1 3.5893 1.4143 -0.6017 6 1 1.4958 2.6230 -0.7941 7 6 2.0081 -1.2042 0.0005 8 1 3.0638 -1.2183 -0.2270 9 7 1.3532 -2.3739 0.2899 10 6 0.1781 -2.4550 0.9643 11 6 -0.1976 -3.7766 1.0757 12 6 -1.3630 -4.2797 1.7062 13 8 -1.5689 -5.4758 1.7359 14 6 0.8604 -4.5632 0.4114 15 6 1.0665 -5.9230 0.1939 16 6 2.2081 -6.3079 -0.4883 17 6 3.0957 -5.3379 -0.9253 18 7 2.8784 -4.0581 -0.7073 19 6 1.8013 -3.6338 -0.0602 20 1 -0.4850 0.8401 0.0004 21 1 -0.3778 -1.6139 1.3516 22 1 -2.0679 -3.5990 2.1603 23 1 0.3563 -6.6561 0.5467 24 1 2.4047 -7.3527 -0.6778 25 1 3.9858 -5.6388 -1.4578 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085607298.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:03 Heat of formation + Delta-G solvation = 12.816700 kcal Electronic energy + Delta-G solvation = -13638.044109 eV Core-core repulsion = 11195.473636 eV Total energy + Delta-G solvation = -2442.570473 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.35106 -39.29804 -38.85633 -35.30432 -33.63757 -31.61888 -30.22475 -27.63471 -24.85387 -24.28714 -22.97949 -20.62702 -19.81147 -18.27007 -17.30859 -16.76644 -16.62013 -16.04712 -15.93141 -15.31165 -15.04536 -14.61526 -14.12345 -13.79865 -13.61687 -13.40373 -13.14718 -12.58220 -12.47457 -12.13883 -11.31881 -10.95928 -10.66628 -10.04597 -9.43807 -9.00109 -8.70831 -6.49376 0.04759 0.50503 1.01938 1.37167 1.47777 1.52696 2.01811 2.41346 2.48968 2.86377 3.18989 3.75611 3.94700 4.04461 4.22149 4.36574 4.46906 4.77174 4.84924 5.05256 5.14301 5.24107 5.44742 5.48129 5.77612 6.00090 6.32483 6.74988 6.91637 7.01064 7.41712 8.23803 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.031725 B = 0.011035 C = 0.008325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.371083 B = 2536.688349 C = 3362.466982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.014 3.986 3 Si 1.017 2.983 4 H -0.257 1.257 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.373 4.373 8 H 0.106 0.894 9 N -0.270 5.270 10 C 0.145 3.855 11 C -0.371 4.371 12 C 0.416 3.584 13 O -0.549 6.549 14 C -0.130 4.130 15 C -0.059 4.059 16 C -0.188 4.188 17 C 0.098 3.902 18 N -0.509 5.509 19 C 0.188 3.812 20 H 0.297 0.703 21 H 0.194 0.806 22 H 0.124 0.876 23 H 0.135 0.865 24 H 0.173 0.827 25 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.968 -1.414 0.812 2.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.194 4.194 3 Si 0.836 3.164 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.190 1.190 7 C -0.500 4.500 8 H 0.124 0.876 9 N 0.067 4.933 10 C -0.002 4.002 11 C -0.379 4.379 12 C 0.285 3.715 13 O -0.432 6.432 14 C -0.136 4.136 15 C -0.086 4.086 16 C -0.208 4.208 17 C -0.070 4.070 18 N -0.221 5.221 19 C -0.041 4.041 20 H 0.108 0.892 21 H 0.210 0.790 22 H 0.140 0.860 23 H 0.153 0.847 24 H 0.191 0.809 25 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 2.446 -0.911 0.432 2.646 hybrid contribution -0.296 0.327 0.066 0.446 sum 2.150 -0.584 0.498 2.283 Atomic orbital electron populations 1.69805 1.07586 1.31330 1.40645 1.26554 0.96601 1.03481 0.92783 0.84580 0.77990 0.74217 0.79593 1.18117 1.18880 1.18981 1.20401 0.95758 0.82717 1.51101 0.87608 1.40277 1.16034 1.03622 1.33332 1.23026 0.87349 0.97167 0.92655 1.20335 1.03882 0.92526 1.21159 1.21840 0.84851 0.89724 0.75058 1.90392 1.76905 1.20865 1.55037 1.19923 0.96340 0.94374 1.03004 1.21145 0.97696 0.93216 0.96517 1.22224 0.94994 1.02280 1.01346 1.22995 1.00221 0.85509 0.98265 1.66303 1.20093 1.20368 1.15293 1.19078 0.95046 0.86575 1.03436 0.89236 0.78968 0.85979 0.84676 0.80916 0.79218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -40.73 10.94 21.67 0.24 -40.49 15 2 C 0.01 0.66 5.31 84.97 0.45 1.11 15 3 Si 1.02 36.08 29.58 68.60 2.03 38.10 15 4 H -0.26 -8.64 7.11 99.48 0.71 -7.93 15 5 H -0.26 -9.44 7.11 99.48 0.71 -8.73 15 6 H -0.27 -8.96 7.11 99.48 0.71 -8.25 15 7 C -0.37 -19.32 9.98 84.06 0.84 -18.49 15 8 H 0.11 5.54 7.87 -2.91 -0.02 5.52 15 9 N -0.27 -14.20 2.88 -346.19 -1.00 -15.20 15 10 C 0.15 6.99 9.88 84.00 0.83 7.82 15 11 C -0.37 -17.21 6.12 -20.03 -0.12 -17.33 15 12 C 0.42 16.75 11.44 68.68 0.79 17.54 15 13 O -0.55 -24.66 16.87 -3.42 -0.06 -24.72 15 14 C -0.13 -6.28 6.24 -20.03 -0.13 -6.40 15 15 C -0.06 -2.43 9.91 22.56 0.22 -2.20 15 16 C -0.19 -6.31 10.11 22.39 0.23 -6.08 15 17 C 0.10 3.54 11.15 84.80 0.95 4.49 15 18 N -0.51 -23.97 10.38 -192.51 -2.00 -25.97 15 19 C 0.19 9.67 7.78 133.57 1.04 10.71 15 20 H 0.30 12.57 8.31 -92.70 -0.77 11.80 15 21 H 0.19 8.74 6.41 -2.91 -0.02 8.72 15 22 H 0.12 3.79 8.06 -2.91 -0.02 3.76 15 23 H 0.14 5.28 7.46 -2.91 -0.02 5.26 15 24 H 0.17 4.04 8.06 -2.91 -0.02 4.02 15 25 H 0.19 5.00 8.06 -2.91 -0.02 4.98 15 Total: -1.00 -63.51 234.11 5.52 -57.99 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 1.22 Total: 19.14 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 5.09 Total: -8.85 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -2.76 Total: -81.67 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.06 Total: -24.72 kcal Atomic # 14 Polarization: 36.08 SS G_CDS: 2.03 Total: 38.10 kcal Total: -63.51 5.52 -57.99 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085607298.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.803 kcal (2) G-P(sol) polarization free energy of solvation -63.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds