Wall clock time and date at job start Mon Mar 30 2020 03:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 N 1.35496 * 179.97438 * 2 1 4 4 C 1.46496 * 119.99906 * 271.28847 * 3 2 1 5 5 C 1.50704 * 109.47243 * 270.00290 * 4 3 2 6 6 H 1.07993 * 119.99709 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00148 * 180.02562 * 5 4 3 8 8 N 1.31525 * 119.99766 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00188 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46940 * 59.99608 * 9 7 5 11 11 H 1.48498 * 109.47159 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47007 * 299.99498 * 9 7 5 13 13 C 1.46497 * 119.99848 * 91.29520 * 3 2 1 14 14 C 1.50707 * 109.47012 * 269.99437 * 13 3 2 15 15 C 1.38238 * 119.99792 * 90.00154 * 14 13 3 16 16 C 1.38235 * 119.99712 * 179.97438 * 15 14 13 17 17 C 1.38234 * 120.00220 * 359.97124 * 16 15 14 18 18 C 1.38233 * 120.00037 * 0.28719 * 17 16 15 19 19 C 1.38234 * 120.00179 * 269.98090 * 14 13 3 20 20 H 1.08997 * 109.47515 * 30.00581 * 4 3 2 21 21 H 1.09004 * 109.47153 * 150.00429 * 4 3 2 22 22 H 0.96996 * 119.99503 * 180.02562 * 8 7 5 23 23 H 1.09005 * 109.47643 * 149.99898 * 13 3 2 24 24 H 1.09000 * 109.47513 * 29.99062 * 13 3 2 25 25 H 1.08005 * 120.00068 * 359.97438 * 15 14 13 26 26 H 1.07999 * 119.99770 * 179.97438 * 16 15 14 27 27 H 1.08002 * 119.99744 * 180.02562 * 17 16 15 28 28 H 1.07998 * 120.00395 * 179.72811 * 18 17 16 29 29 H 1.07999 * 119.99968 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 7 2.4910 0.0006 0.0000 4 6 3.2234 -0.0276 1.2684 5 6 3.4739 1.3832 1.7353 6 1 3.1230 2.2173 1.1460 7 6 4.1520 1.6090 2.9144 8 7 4.5798 0.5931 3.6319 9 14 4.4619 3.3577 3.4936 10 1 3.1638 4.0522 3.6876 11 1 5.2045 3.3291 4.7792 12 1 5.2634 4.0819 2.4745 13 6 3.2234 0.0296 -1.2684 14 6 3.4753 -1.3810 -1.7354 15 6 2.5540 -2.0149 -2.5480 16 6 2.7853 -3.3086 -2.9767 17 6 3.9382 -3.9681 -2.5934 18 6 4.8569 -3.3361 -1.7765 19 6 4.6278 -2.0407 -1.3515 20 1 2.6347 -0.5587 2.0163 21 1 4.1761 -0.5379 1.1265 22 1 5.0566 0.7520 4.4615 23 1 4.1756 0.5408 -1.1266 24 1 2.6340 0.5601 -2.0163 25 1 1.6535 -1.4995 -2.8478 26 1 2.0654 -3.8040 -3.6112 27 1 4.1190 -4.9786 -2.9288 28 1 5.7554 -3.8528 -1.4734 29 1 5.3479 -1.5452 -0.7172 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090568961.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:34 Heat of formation + Delta-G solvation = 56.445184 kcal Electronic energy + Delta-G solvation = -13424.503339 eV Core-core repulsion = 11119.657834 eV Total energy + Delta-G solvation = -2304.845505 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.15795 -36.85654 -34.28377 -32.83969 -31.08503 -30.69321 -27.52797 -25.45113 -22.92471 -22.21368 -21.19381 -17.67311 -16.81332 -16.20793 -15.32509 -15.04562 -14.76312 -14.19998 -13.67249 -13.24451 -12.87450 -12.59129 -12.41724 -12.21279 -11.53211 -11.47753 -11.37622 -10.97690 -10.89365 -10.78787 -10.63018 -10.16046 -9.73825 -8.72033 -8.61072 -8.55236 -7.51460 -6.16076 -4.24322 1.49138 1.60585 3.26140 3.31089 3.33057 3.51051 3.70564 4.01744 4.16652 4.35626 5.02069 5.05788 5.16336 5.17752 5.31379 5.47171 5.68990 5.82244 6.03767 6.19429 6.24441 6.57100 6.63537 6.68462 6.87651 7.15424 7.19757 7.41984 7.71799 7.90775 8.06765 8.81529 9.12950 9.43210 10.89955 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.034710 B = 0.007688 C = 0.006768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.497776 B = 3641.027257 C = 4135.845747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C 0.434 3.566 3 N -0.563 5.563 4 C 0.264 3.736 5 C -0.543 4.543 6 H 0.063 0.937 7 C 0.065 3.935 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.178 3.822 14 C -0.102 4.102 15 C -0.107 4.107 16 C -0.127 4.127 17 C -0.124 4.124 18 C -0.124 4.124 19 C -0.096 4.096 20 H 0.031 0.969 21 H 0.045 0.955 22 H 0.266 0.734 23 H 0.099 0.901 24 H 0.072 0.928 25 H 0.116 0.884 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.120 0.880 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.749 -5.763 -11.101 12.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.198 5.198 2 C 0.032 3.968 3 N -0.287 5.287 4 C 0.145 3.855 5 C -0.582 4.582 6 H 0.081 0.919 7 C -0.138 4.138 8 N -0.531 5.531 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.200 1.200 13 C 0.054 3.946 14 C -0.104 4.104 15 C -0.125 4.125 16 C -0.145 4.145 17 C -0.143 4.143 18 C -0.142 4.142 19 C -0.114 4.114 20 H 0.050 0.950 21 H 0.063 0.937 22 H 0.076 0.924 23 H 0.117 0.883 24 H 0.091 0.909 25 H 0.135 0.865 26 H 0.135 0.865 27 H 0.134 0.866 28 H 0.138 0.862 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.329 -5.790 -10.888 12.403 hybrid contribution 0.750 0.841 0.534 1.247 sum 2.079 -4.949 -10.354 11.663 Atomic orbital electron populations 1.81721 1.06590 1.24664 1.06858 1.23946 0.87212 0.90529 0.95098 1.44958 0.95638 1.80267 1.07840 1.19379 0.91406 0.97288 0.77379 1.21578 1.36910 0.92648 1.07022 0.91900 1.24947 0.95247 0.97496 0.96156 1.69919 1.37925 1.30414 1.14845 0.86538 0.78484 0.84342 0.77999 1.20154 1.21153 1.20022 1.20275 0.98099 0.91542 0.84720 1.20561 0.94671 0.98040 0.97098 1.21061 0.98576 0.95092 0.97809 1.21068 0.97565 0.95041 1.00792 1.21098 0.94770 0.99607 0.98788 1.21150 0.99502 0.95243 0.98303 1.21200 0.97184 0.94664 0.98390 0.95050 0.93703 0.92434 0.88283 0.90935 0.86546 0.86521 0.86566 0.86218 0.85361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.23 18.54 41.27 0.77 -10.46 15 2 C 0.43 9.41 15.71 -102.19 -1.61 7.81 15 3 N -0.56 -11.50 2.46 -134.52 -0.33 -11.83 15 4 C 0.26 6.31 5.41 -5.19 -0.03 6.28 15 5 C -0.54 -14.21 9.39 -34.44 -0.32 -14.54 15 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 15 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 15 8 N -0.89 -24.83 13.29 55.43 0.74 -24.10 15 9 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 15 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 15 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 13 C 0.18 2.87 5.78 -5.19 -0.03 2.84 15 14 C -0.10 -1.54 5.46 -104.62 -0.57 -2.11 15 15 C -0.11 -1.52 9.70 -39.58 -0.38 -1.90 15 16 C -0.13 -1.61 10.05 -39.58 -0.40 -2.01 15 17 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 15 18 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 15 19 C -0.10 -1.39 9.70 -39.58 -0.38 -1.78 15 20 H 0.03 0.83 8.03 -51.93 -0.42 0.41 15 21 H 0.05 1.07 8.07 -51.93 -0.42 0.65 15 22 H 0.27 7.04 8.31 -40.82 -0.34 6.71 15 23 H 0.10 1.54 8.02 -51.93 -0.42 1.12 15 24 H 0.07 1.04 7.98 -51.93 -0.41 0.63 15 25 H 0.12 1.58 8.06 -52.48 -0.42 1.15 15 26 H 0.12 1.22 8.06 -52.49 -0.42 0.79 15 27 H 0.12 1.12 8.06 -52.49 -0.42 0.70 15 28 H 0.12 1.29 8.06 -52.49 -0.42 0.86 15 29 H 0.13 1.84 8.06 -52.49 -0.42 1.42 15 LS Contribution 270.41 15.07 4.08 4.08 Total: -1.00 -28.84 270.41 -7.72 -36.56 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -3.33 Total: -2.22 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -4.62 Total: -7.69 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 1.17 Total: -46.39 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.84 -7.72 -36.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090568961.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.005 kcal (2) G-P(sol) polarization free energy of solvation -28.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds