Wall clock time and date at job start Mon Mar 30 2020 03:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 N 1.35496 * 179.97438 * 2 1 4 4 C 1.46496 * 119.99906 * 271.28847 * 3 2 1 5 5 C 1.50704 * 109.47243 * 270.00290 * 4 3 2 6 6 H 1.07993 * 119.99709 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00148 * 180.02562 * 5 4 3 8 8 N 1.31525 * 119.99766 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00188 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46940 * 59.99608 * 9 7 5 11 11 H 1.48498 * 109.47159 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47007 * 299.99498 * 9 7 5 13 13 C 1.46497 * 119.99848 * 91.29520 * 3 2 1 14 14 C 1.50707 * 109.47012 * 269.99437 * 13 3 2 15 15 C 1.38238 * 119.99792 * 90.00154 * 14 13 3 16 16 C 1.38235 * 119.99712 * 179.97438 * 15 14 13 17 17 C 1.38234 * 120.00220 * 359.97124 * 16 15 14 18 18 C 1.38233 * 120.00037 * 0.28719 * 17 16 15 19 19 C 1.38234 * 120.00179 * 269.98090 * 14 13 3 20 20 H 1.08997 * 109.47515 * 30.00581 * 4 3 2 21 21 H 1.09004 * 109.47153 * 150.00429 * 4 3 2 22 22 H 0.96996 * 119.99503 * 180.02562 * 8 7 5 23 23 H 1.09005 * 109.47643 * 149.99898 * 13 3 2 24 24 H 1.09000 * 109.47513 * 29.99062 * 13 3 2 25 25 H 1.08005 * 120.00068 * 359.97438 * 15 14 13 26 26 H 1.07999 * 119.99770 * 179.97438 * 16 15 14 27 27 H 1.08002 * 119.99744 * 180.02562 * 17 16 15 28 28 H 1.07998 * 120.00395 * 179.72811 * 18 17 16 29 29 H 1.07999 * 119.99968 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 7 2.4910 0.0006 0.0000 4 6 3.2234 -0.0276 1.2684 5 6 3.4739 1.3832 1.7353 6 1 3.1230 2.2173 1.1460 7 6 4.1520 1.6090 2.9144 8 7 4.5798 0.5931 3.6319 9 14 4.4619 3.3577 3.4936 10 1 3.1638 4.0522 3.6876 11 1 5.2045 3.3291 4.7792 12 1 5.2634 4.0819 2.4745 13 6 3.2234 0.0296 -1.2684 14 6 3.4753 -1.3810 -1.7354 15 6 2.5540 -2.0149 -2.5480 16 6 2.7853 -3.3086 -2.9767 17 6 3.9382 -3.9681 -2.5934 18 6 4.8569 -3.3361 -1.7765 19 6 4.6278 -2.0407 -1.3515 20 1 2.6347 -0.5587 2.0163 21 1 4.1761 -0.5379 1.1265 22 1 5.0566 0.7520 4.4615 23 1 4.1756 0.5408 -1.1266 24 1 2.6340 0.5601 -2.0163 25 1 1.6535 -1.4995 -2.8478 26 1 2.0654 -3.8040 -3.6112 27 1 4.1190 -4.9786 -2.9288 28 1 5.7554 -3.8528 -1.4734 29 1 5.3479 -1.5452 -0.7172 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090568961.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:33 Heat of formation + Delta-G solvation = 44.513338 kcal Electronic energy + Delta-G solvation = -13425.020742 eV Core-core repulsion = 11119.657834 eV Total energy + Delta-G solvation = -2305.362909 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.28957 -38.43629 -36.01338 -34.71571 -32.43231 -31.72205 -29.32309 -26.88232 -24.77135 -23.33499 -22.31995 -19.28079 -18.61266 -17.51766 -16.97043 -16.22917 -16.11616 -15.80334 -15.16735 -14.60986 -14.21645 -14.15613 -13.84214 -13.58485 -13.28204 -13.22542 -12.90431 -12.61996 -12.56102 -12.09775 -12.04345 -11.78163 -11.66921 -10.61344 -9.75690 -9.68732 -9.21982 -8.18610 -6.35456 0.41181 0.56581 1.44159 1.45803 1.53159 1.88216 2.01642 2.31690 2.44327 3.02047 3.10436 3.90771 3.94104 4.21494 4.26705 4.34923 4.65212 4.72239 4.80916 4.90948 5.15061 5.16510 5.22551 5.51290 5.61933 5.66793 5.71350 5.79812 6.03249 6.15716 6.19550 6.77085 7.33782 7.42711 8.85481 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.034710 B = 0.007688 C = 0.006768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.497776 B = 3641.027257 C = 4135.845747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C 0.436 3.564 3 N -0.561 5.561 4 C 0.279 3.721 5 C -0.555 4.555 6 H 0.060 0.940 7 C 0.018 3.982 8 N -0.923 5.923 9 Si 0.961 3.039 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.263 1.263 13 C 0.176 3.824 14 C -0.118 4.118 15 C -0.119 4.119 16 C -0.129 4.129 17 C -0.121 4.121 18 C -0.129 4.129 19 C -0.113 4.113 20 H 0.000 1.000 21 H 0.045 0.955 22 H 0.268 0.732 23 H 0.102 0.898 24 H 0.090 0.910 25 H 0.119 0.881 26 H 0.142 0.858 27 H 0.147 0.853 28 H 0.141 0.859 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.201 -6.002 -12.080 13.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.216 5.216 2 C 0.035 3.965 3 N -0.284 5.284 4 C 0.159 3.841 5 C -0.594 4.594 6 H 0.079 0.921 7 C -0.182 4.182 8 N -0.562 5.562 9 Si 0.786 3.214 10 H -0.204 1.204 11 H -0.207 1.207 12 H -0.187 1.187 13 C 0.054 3.946 14 C -0.120 4.120 15 C -0.138 4.138 16 C -0.147 4.147 17 C -0.139 4.139 18 C -0.147 4.147 19 C -0.131 4.131 20 H 0.018 0.982 21 H 0.063 0.937 22 H 0.077 0.923 23 H 0.120 0.880 24 H 0.109 0.891 25 H 0.137 0.863 26 H 0.159 0.841 27 H 0.165 0.835 28 H 0.158 0.842 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.790 -6.030 -11.904 13.463 hybrid contribution 0.614 0.835 0.798 1.308 sum 2.404 -5.195 -11.105 12.494 Atomic orbital electron populations 1.81704 1.07024 1.25472 1.07353 1.24058 0.87502 0.90292 0.94694 1.44974 0.95161 1.79972 1.08340 1.18980 0.90979 0.95963 0.78169 1.21849 1.36815 0.93446 1.07286 0.92148 1.25716 0.95000 1.01197 0.96261 1.70018 1.38585 1.32340 1.15261 0.85564 0.78230 0.79804 0.77826 1.20403 1.20724 1.18713 1.20489 0.97979 0.93027 0.83145 1.20444 0.95594 0.97524 0.98406 1.21209 0.98517 0.96030 0.98019 1.21412 0.98278 0.94444 1.00585 1.21492 0.93974 1.00811 0.97631 1.21451 1.00537 0.94624 0.98057 1.21294 0.97175 0.95713 0.98958 0.98178 0.93714 0.92273 0.87973 0.89148 0.86325 0.84061 0.83517 0.84154 0.86015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -23.10 18.54 17.21 0.32 -22.78 15 2 C 0.44 18.91 15.71 184.39 2.90 21.81 15 3 N -0.56 -22.97 2.46 -579.50 -1.42 -24.39 15 4 C 0.28 13.56 5.41 85.64 0.46 14.02 15 5 C -0.56 -29.15 9.39 25.60 0.24 -28.91 15 6 H 0.06 3.15 7.81 -2.91 -0.02 3.12 15 7 C 0.02 0.98 5.46 84.65 0.46 1.44 15 8 N -0.92 -51.57 13.29 21.45 0.28 -51.29 15 9 Si 0.96 42.00 29.54 68.60 2.03 44.03 15 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 15 11 H -0.28 -12.06 7.11 99.48 0.71 -11.36 15 12 H -0.26 -10.90 7.11 99.48 0.71 -10.19 15 13 C 0.18 5.61 5.78 85.64 0.50 6.11 15 14 C -0.12 -3.50 5.46 -19.86 -0.11 -3.61 15 15 C -0.12 -3.23 9.70 22.27 0.22 -3.02 15 16 C -0.13 -2.97 10.05 22.27 0.22 -2.75 15 17 C -0.12 -2.60 10.05 22.27 0.22 -2.38 15 18 C -0.13 -3.09 10.05 22.27 0.22 -2.86 15 19 C -0.11 -3.22 9.70 22.27 0.22 -3.00 15 20 H 0.00 0.01 8.03 -2.39 -0.02 -0.01 15 21 H 0.04 2.17 8.07 -2.38 -0.02 2.15 15 22 H 0.27 14.20 8.31 -92.71 -0.77 13.43 15 23 H 0.10 3.16 8.02 -2.38 -0.02 3.14 15 24 H 0.09 2.53 7.98 -2.39 -0.02 2.51 15 25 H 0.12 3.09 8.06 -2.91 -0.02 3.06 15 26 H 0.14 2.49 8.06 -2.91 -0.02 2.47 15 27 H 0.15 2.24 8.06 -2.91 -0.02 2.21 15 28 H 0.14 2.69 8.06 -2.91 -0.02 2.67 15 29 H 0.12 3.52 8.06 -2.91 -0.02 3.50 15 Total: -1.00 -60.25 270.41 7.89 -52.36 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 1.13 Total: 5.21 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 5.55 Total: -3.14 kcal Atomic # 7 Polarization: -97.63 SS G_CDS: -0.82 Total: -98.45 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -60.25 7.89 -52.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090568961.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.874 kcal (2) G-P(sol) polarization free energy of solvation -60.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds