Wall clock time and date at job start Mon Mar 30 2020 03:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 119.99810 * 2 1 4 4 H 1.48506 * 109.46893 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47293 * 299.99669 * 3 2 1 6 6 H 1.48495 * 109.47464 * 60.00017 * 3 2 1 7 7 C 1.37880 * 119.99616 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99485 * 179.97438 * 7 2 1 9 9 C 1.50689 * 120.00045 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.47396 * 299.99551 * 9 7 2 11 11 N 1.46896 * 109.47775 * 59.99788 * 9 7 2 12 12 C 1.50703 * 109.46946 * 180.02562 * 9 7 2 13 13 C 1.36670 * 120.11550 * 265.04017 * 12 9 7 14 14 C 1.38790 * 120.52596 * 180.02562 * 13 12 9 15 15 C 1.37785 * 120.66953 * 359.94531 * 14 13 12 16 16 C 1.39088 * 119.77670 * 0.02562 * 15 14 13 17 17 N 1.37696 * 133.51355 * 179.97438 * 16 15 14 18 18 H 0.96993 * 125.06693 * 0.05999 * 17 16 15 19 19 C 1.36841 * 109.86869 * 179.80357 * 17 16 15 20 20 C 1.34228 * 109.94158 * 0.38290 * 19 17 16 21 21 C 1.39589 * 120.12271 * 84.99601 * 12 9 7 22 22 H 0.97002 * 120.00051 * 0.02562 * 1 2 3 23 23 H 1.00896 * 110.99994 * 296.04717 * 11 9 7 24 24 H 1.00896 * 110.99918 * 59.99783 * 11 9 7 25 25 H 1.08004 * 119.73358 * 0.02562 * 13 12 9 26 26 H 1.07997 * 119.65997 * 179.97438 * 14 13 12 27 27 H 1.07996 * 120.11052 * 180.02562 * 15 14 13 28 28 H 1.08006 * 125.02684 * 180.27912 * 19 17 16 29 29 H 1.08002 * 126.50417 * 179.89956 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8904 11 7 0.4068 -2.5772 -1.1991 12 6 2.2303 -3.6446 0.0018 13 6 2.5991 -4.2327 -1.1754 14 6 3.4999 -5.2886 -1.1841 15 6 4.0392 -5.7620 -0.0079 16 6 3.6784 -5.1780 1.2017 17 7 4.0306 -5.4154 2.5115 18 1 4.6506 -6.1006 2.8065 19 6 3.3800 -4.5369 3.3347 20 6 2.5960 -3.7244 2.6089 21 6 2.7646 -4.1081 1.2052 22 1 -0.4850 0.8401 -0.0004 23 1 -0.3005 -1.8578 -1.1910 24 1 0.9651 -2.5260 -2.0380 25 1 2.1863 -3.8730 -2.1064 26 1 3.7813 -5.7433 -2.1224 27 1 4.7397 -6.5838 -0.0252 28 1 3.4811 -4.5035 4.4095 29 1 1.9645 -2.9342 2.9874 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095663922.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:56 Heat of formation + Delta-G solvation = 53.839491 kcal Electronic energy + Delta-G solvation = -13954.033786 eV Core-core repulsion = 11649.075290 eV Total energy + Delta-G solvation = -2304.958496 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.54537 -36.73013 -34.33399 -31.70131 -30.42163 -28.45941 -27.91749 -25.84403 -22.98870 -21.14396 -20.59244 -19.53270 -17.04442 -16.42818 -15.41995 -14.96357 -14.54871 -14.11481 -13.82545 -13.37323 -12.75708 -12.41920 -12.11331 -11.91975 -11.45917 -11.17219 -10.98684 -10.73145 -10.47534 -10.45019 -9.92082 -9.39299 -8.91230 -8.53104 -7.53997 -7.18287 -6.89603 -6.01422 -4.17886 1.87816 2.41681 3.24981 3.33483 3.34958 3.39732 3.64765 4.36760 4.75780 5.19184 5.37235 5.42002 5.68746 5.89492 5.98500 6.23623 6.33748 6.47341 6.63238 6.85007 6.86305 7.20888 7.26480 7.40929 7.48547 7.81705 7.86245 7.97876 8.06546 8.18903 8.76072 9.01726 9.19408 9.53053 10.95141 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.032100 B = 0.009903 C = 0.008723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.058990 B = 2826.633856 C = 3209.247198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.065 3.935 3 Si 0.895 3.105 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.533 4.533 8 H 0.055 0.945 9 C 0.240 3.760 10 H 0.049 0.951 11 N -0.851 5.851 12 C 0.026 3.974 13 C -0.155 4.155 14 C -0.092 4.092 15 C -0.169 4.169 16 C 0.092 3.908 17 N -0.606 5.606 18 H 0.406 0.594 19 C 0.016 3.984 20 C -0.172 4.172 21 C -0.108 4.108 22 H 0.264 0.736 23 H 0.355 0.645 24 H 0.311 0.689 25 H 0.121 0.879 26 H 0.113 0.887 27 H 0.106 0.894 28 H 0.161 0.839 29 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.295 -8.435 2.809 10.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.137 4.137 3 Si 0.723 3.277 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.573 4.573 8 H 0.074 0.926 9 C 0.130 3.870 10 H 0.067 0.933 11 N -0.381 5.381 12 C 0.025 3.975 13 C -0.174 4.174 14 C -0.112 4.112 15 C -0.190 4.190 16 C -0.014 4.014 17 N -0.210 5.210 18 H 0.241 0.759 19 C -0.108 4.108 20 C -0.197 4.197 21 C -0.113 4.113 22 H 0.074 0.926 23 H 0.171 0.829 24 H 0.121 0.879 25 H 0.139 0.861 26 H 0.131 0.869 27 H 0.124 0.876 28 H 0.178 0.822 29 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.974 -9.099 3.173 11.338 hybrid contribution 1.219 1.666 0.064 2.066 sum 7.193 -7.433 3.237 10.838 Atomic orbital electron populations 1.69763 1.05789 1.26934 1.51003 1.25007 0.94914 0.99180 0.94604 0.86485 0.80214 0.83411 0.77597 1.19782 1.21009 1.20909 1.21812 0.93658 0.90833 1.50994 0.92627 1.17945 0.89129 0.88281 0.91643 0.93276 1.59560 1.18466 1.55978 1.04065 1.19736 0.93807 0.93723 0.90208 1.20436 1.00420 0.98175 0.98399 1.20732 0.97143 0.97030 0.96259 1.19703 1.05844 1.03467 0.89975 1.18254 0.99585 0.98753 0.84826 1.41629 1.42048 1.32585 1.04730 0.75870 1.21610 0.99049 0.94482 0.95688 1.21806 1.03975 1.02416 0.91534 1.19055 1.00637 0.97793 0.93768 0.92627 0.82940 0.87884 0.86143 0.86874 0.87627 0.82164 0.83721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.91 11.54 55.43 0.64 -24.27 15 2 C 0.06 1.77 5.38 -17.82 -0.10 1.67 15 3 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 15 4 H -0.27 -6.54 7.11 56.52 0.40 -6.13 15 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 7 C -0.53 -14.67 8.71 -34.44 -0.30 -14.97 15 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 15 9 C 0.24 6.18 2.87 -70.02 -0.20 5.98 15 10 H 0.05 1.39 8.04 -51.93 -0.42 0.98 15 11 N -0.85 -20.79 8.79 -6.65 -0.06 -20.85 15 12 C 0.03 0.61 4.99 -104.68 -0.52 0.09 15 13 C -0.15 -3.21 9.22 -39.94 -0.37 -3.58 15 14 C -0.09 -1.64 10.01 -39.54 -0.40 -2.03 15 15 C -0.17 -2.89 10.08 -39.43 -0.40 -3.29 15 16 C 0.09 1.72 7.28 -83.99 -0.61 1.10 15 17 N -0.61 -9.08 6.07 -10.65 -0.06 -9.15 15 18 H 0.41 4.46 8.96 -40.82 -0.37 4.10 15 19 C 0.02 0.24 11.81 -16.73 -0.20 0.04 15 20 C -0.17 -3.35 10.87 -37.67 -0.41 -3.76 15 21 C -0.11 -2.34 6.15 -105.14 -0.65 -2.98 15 22 H 0.26 7.00 8.31 -40.82 -0.34 6.66 15 23 H 0.35 9.21 7.08 -39.29 -0.28 8.93 15 24 H 0.31 7.19 7.20 -39.29 -0.28 6.91 15 25 H 0.12 2.41 6.25 -52.48 -0.33 2.08 15 26 H 0.11 1.63 8.06 -52.49 -0.42 1.21 15 27 H 0.11 1.47 8.06 -52.49 -0.42 1.05 15 28 H 0.16 1.78 8.06 -52.48 -0.42 1.35 15 29 H 0.15 2.84 8.06 -52.49 -0.42 2.42 15 LS Contribution 250.43 15.07 3.77 3.77 Total: -1.00 -30.02 250.43 -7.78 -37.80 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -2.90 Total: 18.15 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -4.14 Total: -21.73 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 0.52 Total: -54.26 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.02 -7.78 -37.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095663922.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.641 kcal (2) G-P(sol) polarization free energy of solvation -30.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds