Wall clock time and date at job start Mon Mar 30 2020 03:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 119.99810 * 2 1 4 4 H 1.48506 * 109.46893 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47293 * 299.99669 * 3 2 1 6 6 H 1.48495 * 109.47464 * 60.00017 * 3 2 1 7 7 C 1.37880 * 119.99616 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99485 * 179.97438 * 7 2 1 9 9 C 1.50689 * 120.00045 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.47396 * 299.99551 * 9 7 2 11 11 N 1.46896 * 109.47775 * 59.99788 * 9 7 2 12 12 C 1.50703 * 109.46946 * 180.02562 * 9 7 2 13 13 C 1.36670 * 120.11550 * 265.04017 * 12 9 7 14 14 C 1.38790 * 120.52596 * 180.02562 * 13 12 9 15 15 C 1.37785 * 120.66953 * 359.94531 * 14 13 12 16 16 C 1.39088 * 119.77670 * 0.02562 * 15 14 13 17 17 N 1.37696 * 133.51355 * 179.97438 * 16 15 14 18 18 H 0.96993 * 125.06693 * 0.05999 * 17 16 15 19 19 C 1.36841 * 109.86869 * 179.80357 * 17 16 15 20 20 C 1.34228 * 109.94158 * 0.38290 * 19 17 16 21 21 C 1.39589 * 120.12271 * 84.99601 * 12 9 7 22 22 H 0.97002 * 120.00051 * 0.02562 * 1 2 3 23 23 H 1.00896 * 110.99994 * 296.04717 * 11 9 7 24 24 H 1.00896 * 110.99918 * 59.99783 * 11 9 7 25 25 H 1.08004 * 119.73358 * 0.02562 * 13 12 9 26 26 H 1.07997 * 119.65997 * 179.97438 * 14 13 12 27 27 H 1.07996 * 120.11052 * 180.02562 * 15 14 13 28 28 H 1.08006 * 125.02684 * 180.27912 * 19 17 16 29 29 H 1.08002 * 126.50417 * 179.89956 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8904 11 7 0.4068 -2.5772 -1.1991 12 6 2.2303 -3.6446 0.0018 13 6 2.5991 -4.2327 -1.1754 14 6 3.4999 -5.2886 -1.1841 15 6 4.0392 -5.7620 -0.0079 16 6 3.6784 -5.1780 1.2017 17 7 4.0306 -5.4154 2.5115 18 1 4.6506 -6.1006 2.8065 19 6 3.3800 -4.5369 3.3347 20 6 2.5960 -3.7244 2.6089 21 6 2.7646 -4.1081 1.2052 22 1 -0.4850 0.8401 -0.0004 23 1 -0.3005 -1.8578 -1.1910 24 1 0.9651 -2.5260 -2.0380 25 1 2.1863 -3.8730 -2.1064 26 1 3.7813 -5.7433 -2.1224 27 1 4.7397 -6.5838 -0.0252 28 1 3.4811 -4.5035 4.4095 29 1 1.9645 -2.9342 2.9874 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095663922.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:56 Heat of formation + Delta-G solvation = 33.234236 kcal Electronic energy + Delta-G solvation = -13954.927297 eV Core-core repulsion = 11649.075290 eV Total energy + Delta-G solvation = -2305.852007 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.93512 -38.30434 -36.14543 -33.58469 -32.04515 -29.90834 -29.45363 -27.87209 -24.74327 -22.56653 -22.17029 -21.00788 -18.63243 -18.43296 -16.89116 -16.65783 -16.23324 -15.84935 -15.24843 -14.93939 -14.68418 -13.85144 -13.69999 -13.50264 -13.28025 -12.95551 -12.85933 -12.34775 -12.29823 -12.10513 -11.82109 -11.17505 -10.73098 -10.31010 -9.21092 -8.95487 -8.41924 -8.05145 -6.35509 0.44596 0.91167 1.34847 1.37225 1.49326 1.97336 2.37173 2.42004 3.05810 3.21251 4.03777 4.20653 4.34987 4.46637 4.53739 4.72488 4.78561 4.97071 5.11142 5.17246 5.40434 5.47257 5.63801 5.77402 5.91074 5.96469 6.06199 6.24446 6.45991 6.67238 6.93389 6.95694 7.13335 7.40130 8.84483 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.032100 B = 0.009903 C = 0.008723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.058990 B = 2826.633856 C = 3209.247198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.021 3.979 3 Si 0.959 3.041 4 H -0.276 1.276 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.547 4.547 8 H 0.038 0.962 9 C 0.249 3.751 10 H 0.005 0.995 11 N -0.842 5.842 12 C -0.021 4.021 13 C -0.163 4.163 14 C -0.099 4.099 15 C -0.150 4.150 16 C 0.080 3.920 17 N -0.585 5.585 18 H 0.431 0.569 19 C 0.063 3.937 20 C -0.235 4.235 21 C -0.142 4.142 22 H 0.267 0.733 23 H 0.344 0.656 24 H 0.319 0.681 25 H 0.116 0.884 26 H 0.151 0.849 27 H 0.150 0.850 28 H 0.213 0.787 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.602 -9.942 3.335 13.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.178 4.178 3 Si 0.785 3.215 4 H -0.200 1.200 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.587 4.587 8 H 0.057 0.943 9 C 0.139 3.861 10 H 0.023 0.977 11 N -0.371 5.371 12 C -0.022 4.022 13 C -0.183 4.183 14 C -0.118 4.118 15 C -0.171 4.171 16 C -0.027 4.027 17 N -0.190 5.190 18 H 0.271 0.729 19 C -0.063 4.063 20 C -0.261 4.261 21 C -0.147 4.147 22 H 0.077 0.923 23 H 0.158 0.842 24 H 0.129 0.871 25 H 0.134 0.866 26 H 0.169 0.831 27 H 0.168 0.832 28 H 0.229 0.771 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.306 -10.644 3.696 13.998 hybrid contribution 0.532 2.040 -0.027 2.108 sum 8.838 -8.605 3.669 12.869 Atomic orbital electron populations 1.69862 1.06877 1.27837 1.51153 1.25736 0.95762 1.02226 0.94113 0.85495 0.78626 0.79449 0.77954 1.20047 1.20006 1.20284 1.21928 0.92869 0.92350 1.51532 0.94316 1.17647 0.88993 0.89425 0.90053 0.97668 1.59520 1.18189 1.55189 1.04207 1.19626 0.95587 0.94710 0.92308 1.20572 1.01234 0.99168 0.97303 1.21084 0.96234 0.96065 0.98417 1.20206 1.04804 1.03244 0.88835 1.18451 0.99308 0.98202 0.86787 1.41627 1.41531 1.32527 1.03349 0.72904 1.22207 0.95234 0.91392 0.97448 1.21822 1.07438 1.04980 0.91830 1.19421 1.01818 0.99374 0.94122 0.92325 0.84192 0.87094 0.86566 0.83123 0.83235 0.77072 0.85909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.74 11.54 21.45 0.25 -52.49 15 2 C 0.02 1.20 5.38 84.65 0.46 1.65 15 3 Si 0.96 44.57 29.54 68.60 2.03 46.60 15 4 H -0.28 -12.81 7.11 99.48 0.71 -12.11 15 5 H -0.27 -12.29 7.11 99.48 0.71 -11.58 15 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 15 7 C -0.55 -31.56 8.71 25.60 0.22 -31.34 15 8 H 0.04 2.31 7.74 -2.91 -0.02 2.28 15 9 C 0.25 13.65 2.87 43.42 0.12 13.77 15 10 H 0.01 0.33 8.04 -2.38 -0.02 0.31 15 11 N -0.84 -43.34 8.79 -174.97 -1.54 -44.88 15 12 C -0.02 -1.02 4.99 -19.90 -0.10 -1.12 15 13 C -0.16 -6.84 9.22 22.03 0.20 -6.64 15 14 C -0.10 -3.28 10.01 22.29 0.22 -3.06 15 15 C -0.15 -4.61 10.08 22.37 0.23 -4.39 15 16 C 0.08 2.79 7.28 39.03 0.28 3.08 15 17 N -0.58 -15.34 6.07 -187.60 -1.14 -16.48 15 18 H 0.43 7.22 8.96 -92.71 -0.83 6.39 15 19 C 0.06 1.77 11.81 83.00 0.98 2.75 15 20 C -0.24 -9.41 10.87 23.51 0.26 -9.15 15 21 C -0.14 -6.30 6.15 -20.20 -0.12 -6.43 15 22 H 0.27 14.49 8.31 -92.71 -0.77 13.71 15 23 H 0.34 18.77 7.08 -89.70 -0.63 18.14 15 24 H 0.32 15.39 7.20 -89.70 -0.65 14.74 15 25 H 0.12 4.77 6.25 -2.91 -0.02 4.75 15 26 H 0.15 3.78 8.06 -2.91 -0.02 3.75 15 27 H 0.15 3.27 8.06 -2.91 -0.02 3.24 15 28 H 0.21 3.65 8.06 -2.91 -0.02 3.63 15 29 H 0.12 5.25 8.06 -2.91 -0.02 5.23 15 Total: -1.00 -68.92 250.43 1.43 -67.48 By element: Atomic # 1 Polarization: 41.57 SS G_CDS: -0.92 Total: 40.66 kcal Atomic # 6 Polarization: -43.63 SS G_CDS: 2.75 Total: -40.88 kcal Atomic # 7 Polarization: -111.43 SS G_CDS: -2.43 Total: -113.85 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -68.92 1.43 -67.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095663922.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.716 kcal (2) G-P(sol) polarization free energy of solvation -68.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds