Wall clock time and date at job start Mon Mar 30 2020 02:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 119.99740 * 2 1 4 4 H 1.48499 * 109.47137 * 269.99762 * 3 2 1 5 5 H 1.48497 * 109.47182 * 30.00131 * 3 2 1 6 6 H 1.48502 * 109.47173 * 149.99780 * 3 2 1 7 7 C 1.37875 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00365 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99701 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.47343 * 59.99661 * 9 7 2 11 11 N 1.46905 * 109.47075 * 299.99819 * 9 7 2 12 12 C 1.50697 * 109.47094 * 179.97438 * 9 7 2 13 13 C 1.38836 * 119.73398 * 79.99990 * 12 9 7 14 14 C 1.37753 * 120.66206 * 179.97438 * 13 12 9 15 15 C 1.39119 * 119.77881 * 0.02562 * 14 13 12 16 16 N 1.37693 * 133.50239 * 179.97438 * 15 14 13 17 17 H 0.96996 * 125.06056 * 0.02562 * 16 15 14 18 18 C 1.36830 * 109.87446 * 180.02562 * 16 15 14 19 19 C 1.34241 * 109.92741 * 359.97438 * 18 16 15 20 20 C 1.40663 * 119.34126 * 0.02562 * 15 14 13 21 21 C 1.36624 * 119.73885 * 259.72837 * 12 9 7 22 22 H 0.96996 * 120.00491 * 359.97438 * 1 2 3 23 23 H 1.00901 * 110.99869 * 176.04968 * 11 9 7 24 24 H 1.00896 * 110.99543 * 300.00090 * 11 9 7 25 25 H 1.07997 * 119.66701 * 0.02562 * 13 12 9 26 26 H 1.08001 * 120.10549 * 180.02562 * 14 13 12 27 27 H 1.08000 * 125.03477 * 180.02562 * 18 16 15 28 28 H 1.08006 * 126.49803 * 179.97438 * 19 18 16 29 29 H 1.08007 * 120.11003 * 359.97438 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1940 0.0000 10 1 3.8746 -0.6807 0.8904 11 7 4.0017 -0.5007 -1.1988 12 6 4.0139 -2.6148 -0.0001 13 6 4.0465 -3.3335 -1.1875 14 6 4.5025 -4.6332 -1.2096 15 6 4.9347 -5.2340 -0.0317 16 7 5.4321 -6.4823 0.2686 17 1 5.5659 -7.1978 -0.3725 18 6 5.7096 -6.5632 1.6060 19 6 5.4106 -5.4004 2.2064 20 6 4.8987 -4.5019 1.1689 21 6 4.4388 -3.1835 1.1673 22 1 -0.4851 0.8400 0.0004 23 1 5.0082 -0.4307 -1.1899 24 1 3.6784 -0.9577 -2.0382 25 1 3.7118 -2.8687 -2.1030 26 1 4.5244 -5.1838 -2.1385 27 1 6.1105 -7.4333 2.1045 28 1 5.5246 -5.1713 3.2557 29 1 4.4150 -2.6166 2.0863 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095674993.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:22 Heat of formation + Delta-G solvation = 57.744752 kcal Electronic energy + Delta-G solvation = -13731.294345 eV Core-core repulsion = 11426.505194 eV Total energy + Delta-G solvation = -2304.789152 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.81360 -37.31739 -33.92722 -31.67933 -31.53587 -28.77424 -28.15546 -26.07556 -22.59810 -22.05879 -20.57178 -19.39605 -17.66470 -16.78486 -15.72152 -14.92897 -14.61796 -14.11505 -13.89550 -13.65435 -13.39158 -12.86170 -12.31867 -12.21052 -11.84461 -11.49793 -11.26335 -10.60499 -10.40022 -10.09037 -9.69608 -9.37093 -9.15597 -8.47452 -7.73496 -7.53101 -7.24469 -5.94657 -4.04254 1.58543 2.19018 3.01421 3.38348 3.61927 3.65740 3.79411 4.45693 4.70856 5.01906 5.16911 5.32854 5.46678 5.67743 5.74671 5.90751 6.00510 6.08769 6.31387 6.35757 6.53634 6.89969 6.97069 7.06322 7.15858 7.42033 7.63779 7.71657 7.78417 8.22002 8.38827 8.76056 9.06829 9.68829 11.14924 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.052578 B = 0.007618 C = 0.007469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.419008 B = 3674.732502 C = 3747.737470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.080 3.920 3 Si 0.938 3.062 4 H -0.281 1.281 5 H -0.320 1.320 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.071 0.929 9 C 0.218 3.782 10 H 0.049 0.951 11 N -0.841 5.841 12 C -0.091 4.091 13 C -0.085 4.085 14 C -0.139 4.139 15 C 0.078 3.922 16 N -0.602 5.602 17 H 0.409 0.591 18 C 0.036 3.964 19 C -0.205 4.205 20 C -0.108 4.108 21 C -0.076 4.076 22 H 0.263 0.737 23 H 0.311 0.689 24 H 0.333 0.667 25 H 0.122 0.878 26 H 0.111 0.889 27 H 0.163 0.837 28 H 0.141 0.859 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.248 -10.898 0.129 16.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.124 4.124 3 Si 0.770 3.230 4 H -0.207 1.207 5 H -0.250 1.250 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.089 0.911 9 C 0.108 3.892 10 H 0.066 0.934 11 N -0.370 5.370 12 C -0.094 4.094 13 C -0.105 4.105 14 C -0.160 4.160 15 C -0.028 4.028 16 N -0.206 5.206 17 H 0.245 0.755 18 C -0.090 4.090 19 C -0.231 4.231 20 C -0.112 4.112 21 C -0.096 4.096 22 H 0.072 0.928 23 H 0.122 0.878 24 H 0.147 0.853 25 H 0.140 0.860 26 H 0.129 0.871 27 H 0.180 0.820 28 H 0.159 0.841 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.693 -10.263 0.328 15.562 hybrid contribution 0.808 -0.586 -0.511 1.121 sum 12.501 -10.849 -0.184 16.553 Atomic orbital electron populations 1.69967 1.06815 1.27262 1.49869 1.25038 0.94594 1.00089 0.92662 0.85845 0.78414 0.80760 0.77977 1.20721 1.24988 1.19940 1.20794 0.87418 0.94488 1.52531 0.91115 1.18669 0.96258 0.84007 0.90218 0.93351 1.59387 1.12971 1.58471 1.06198 1.20683 0.96531 0.99919 0.92286 1.20696 0.98290 0.92943 0.98548 1.19910 1.05503 0.95896 0.94711 1.18205 1.02878 0.85792 0.95877 1.41677 1.58047 1.12477 1.08429 0.75538 1.21650 1.04377 0.99778 0.83212 1.21681 1.09342 0.93500 0.98583 1.19227 1.04667 0.94729 0.92576 1.20189 0.98555 0.92611 0.98220 0.92804 0.87810 0.85270 0.86008 0.87102 0.81952 0.84117 0.86388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.11 13.96 55.43 0.77 -27.34 15 2 C 0.08 2.34 5.47 -17.82 -0.10 2.25 15 3 Si 0.94 24.14 26.03 -169.99 -4.42 19.71 15 4 H -0.28 -7.21 7.11 56.52 0.40 -6.81 15 5 H -0.32 -8.34 7.11 56.52 0.40 -7.94 15 6 H -0.27 -6.84 6.54 56.52 0.37 -6.47 15 7 C -0.51 -14.57 9.28 -34.44 -0.32 -14.89 15 8 H 0.07 2.22 7.98 -52.49 -0.42 1.80 15 9 C 0.22 5.10 2.33 -70.01 -0.16 4.94 15 10 H 0.05 1.18 7.03 -51.93 -0.36 0.82 15 11 N -0.84 -17.72 6.59 -6.65 -0.04 -17.77 15 12 C -0.09 -1.90 4.85 -104.99 -0.51 -2.41 15 13 C -0.09 -1.60 9.26 -39.54 -0.37 -1.97 15 14 C -0.14 -2.32 10.08 -39.43 -0.40 -2.71 15 15 C 0.08 1.29 7.28 -83.99 -0.61 0.68 15 16 N -0.60 -7.64 6.07 -10.65 -0.06 -7.71 15 17 H 0.41 3.75 8.96 -40.82 -0.37 3.38 15 18 C 0.04 0.43 11.82 -16.73 -0.20 0.23 15 19 C -0.21 -3.00 11.08 -37.67 -0.42 -3.42 15 20 C -0.11 -1.94 6.37 -105.14 -0.67 -2.61 15 21 C -0.08 -1.51 9.65 -39.64 -0.38 -1.90 15 22 H 0.26 7.72 8.31 -40.82 -0.34 7.38 15 23 H 0.31 5.66 9.06 -39.29 -0.36 5.31 15 24 H 0.33 6.67 7.31 -39.29 -0.29 6.38 15 25 H 0.12 2.17 6.63 -52.49 -0.35 1.82 15 26 H 0.11 1.52 8.06 -52.49 -0.42 1.09 15 27 H 0.16 1.25 8.06 -52.49 -0.42 0.83 15 28 H 0.14 1.76 8.06 -52.48 -0.42 1.34 15 29 H 0.12 2.24 8.01 -52.48 -0.42 1.82 15 LS Contribution 248.32 15.07 3.74 3.74 Total: -1.00 -33.28 248.32 -7.15 -40.42 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -3.00 Total: 10.74 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -4.13 Total: -21.81 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.67 Total: -52.81 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -4.42 Total: 19.71 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -33.28 -7.15 -40.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095674993.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.168 kcal (2) G-P(sol) polarization free energy of solvation -33.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds