Wall clock time and date at job start Mon Mar 30 2020 02:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 119.99740 * 2 1 4 4 H 1.48499 * 109.47137 * 269.99762 * 3 2 1 5 5 H 1.48497 * 109.47182 * 30.00131 * 3 2 1 6 6 H 1.48502 * 109.47173 * 149.99780 * 3 2 1 7 7 C 1.37875 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00365 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99701 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.47343 * 59.99661 * 9 7 2 11 11 N 1.46905 * 109.47075 * 299.99819 * 9 7 2 12 12 C 1.50697 * 109.47094 * 179.97438 * 9 7 2 13 13 C 1.38836 * 119.73398 * 79.99990 * 12 9 7 14 14 C 1.37753 * 120.66206 * 179.97438 * 13 12 9 15 15 C 1.39119 * 119.77881 * 0.02562 * 14 13 12 16 16 N 1.37693 * 133.50239 * 179.97438 * 15 14 13 17 17 H 0.96996 * 125.06056 * 0.02562 * 16 15 14 18 18 C 1.36830 * 109.87446 * 180.02562 * 16 15 14 19 19 C 1.34241 * 109.92741 * 359.97438 * 18 16 15 20 20 C 1.40663 * 119.34126 * 0.02562 * 15 14 13 21 21 C 1.36624 * 119.73885 * 259.72837 * 12 9 7 22 22 H 0.96996 * 120.00491 * 359.97438 * 1 2 3 23 23 H 1.00901 * 110.99869 * 176.04968 * 11 9 7 24 24 H 1.00896 * 110.99543 * 300.00090 * 11 9 7 25 25 H 1.07997 * 119.66701 * 0.02562 * 13 12 9 26 26 H 1.08001 * 120.10549 * 180.02562 * 14 13 12 27 27 H 1.08000 * 125.03477 * 180.02562 * 18 16 15 28 28 H 1.08006 * 126.49803 * 179.97438 * 19 18 16 29 29 H 1.08007 * 120.11003 * 359.97438 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1940 0.0000 10 1 3.8746 -0.6807 0.8904 11 7 4.0017 -0.5007 -1.1988 12 6 4.0139 -2.6148 -0.0001 13 6 4.0465 -3.3335 -1.1875 14 6 4.5025 -4.6332 -1.2096 15 6 4.9347 -5.2340 -0.0317 16 7 5.4321 -6.4823 0.2686 17 1 5.5659 -7.1978 -0.3725 18 6 5.7096 -6.5632 1.6060 19 6 5.4106 -5.4004 2.2064 20 6 4.8987 -4.5019 1.1689 21 6 4.4388 -3.1835 1.1673 22 1 -0.4851 0.8400 0.0004 23 1 5.0082 -0.4307 -1.1899 24 1 3.6784 -0.9577 -2.0382 25 1 3.7118 -2.8687 -2.1030 26 1 4.5244 -5.1838 -2.1385 27 1 6.1105 -7.4333 2.1045 28 1 5.5246 -5.1713 3.2557 29 1 4.4150 -2.6166 2.0863 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095674993.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:22 Heat of formation + Delta-G solvation = 33.421280 kcal Electronic energy + Delta-G solvation = -13732.349090 eV Core-core repulsion = 11426.505194 eV Total energy + Delta-G solvation = -2305.843897 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.01234 -38.79456 -35.65796 -33.78447 -32.79775 -30.15311 -29.41725 -28.10138 -24.22325 -23.47149 -21.75257 -20.89961 -19.01434 -18.77266 -17.08925 -16.59051 -16.43106 -15.66331 -15.27663 -15.16604 -14.70449 -14.39630 -14.00752 -13.51362 -13.41702 -13.31821 -12.81248 -12.55246 -11.97510 -11.79394 -11.59975 -11.30273 -10.73121 -10.59327 -9.39576 -8.90958 -8.52522 -8.22228 -6.34963 0.29386 0.77672 1.52332 1.59440 1.73576 1.90380 2.34952 2.55213 3.02907 3.13388 3.88100 4.07672 4.21441 4.25069 4.38249 4.50777 4.62696 4.79650 4.98372 5.04105 5.15550 5.29006 5.55902 5.57793 5.81225 5.89113 5.96597 6.16498 6.32588 6.51886 6.79271 6.83514 7.03068 7.41534 8.91215 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.052578 B = 0.007618 C = 0.007469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.419008 B = 3674.732502 C = 3747.737470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.025 3.975 3 Si 1.003 2.997 4 H -0.274 1.274 5 H -0.324 1.324 6 H -0.262 1.262 7 C -0.511 4.511 8 H 0.025 0.975 9 C 0.228 3.772 10 H 0.037 0.963 11 N -0.842 5.842 12 C -0.115 4.115 13 C -0.108 4.108 14 C -0.127 4.127 15 C 0.066 3.934 16 N -0.587 5.587 17 H 0.430 0.570 18 C 0.071 3.929 19 C -0.242 4.242 20 C -0.130 4.130 21 C -0.099 4.099 22 H 0.264 0.736 23 H 0.332 0.668 24 H 0.340 0.660 25 H 0.124 0.876 26 H 0.144 0.856 27 H 0.217 0.783 28 H 0.155 0.845 29 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.717 -12.762 -0.144 19.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.174 4.174 3 Si 0.833 3.167 4 H -0.200 1.200 5 H -0.254 1.254 6 H -0.186 1.186 7 C -0.550 4.550 8 H 0.043 0.957 9 C 0.118 3.882 10 H 0.055 0.945 11 N -0.373 5.373 12 C -0.118 4.118 13 C -0.127 4.127 14 C -0.148 4.148 15 C -0.041 4.041 16 N -0.192 5.192 17 H 0.269 0.731 18 C -0.056 4.056 19 C -0.267 4.267 20 C -0.135 4.135 21 C -0.119 4.119 22 H 0.073 0.927 23 H 0.145 0.855 24 H 0.155 0.845 25 H 0.142 0.858 26 H 0.162 0.838 27 H 0.233 0.767 28 H 0.172 0.828 29 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 14.195 -12.166 0.035 18.695 hybrid contribution 0.092 -0.244 -0.386 0.466 sum 14.286 -12.409 -0.352 18.927 Atomic orbital electron populations 1.70096 1.08567 1.28143 1.52230 1.25887 0.95202 1.03662 0.92609 0.84796 0.77338 0.76350 0.78197 1.20012 1.25445 1.18650 1.21005 0.90230 0.92495 1.51238 0.95655 1.18281 0.93031 0.86310 0.90594 0.94485 1.59076 1.14612 1.58035 1.05540 1.20455 0.98645 0.98908 0.93813 1.20740 0.99912 0.94212 0.97850 1.20184 1.03377 0.95023 0.96186 1.18340 1.03094 0.87342 0.95352 1.41755 1.56465 1.11570 1.09414 0.73088 1.22441 1.00611 1.00124 0.82390 1.21985 1.11418 0.94104 0.99152 1.19602 1.04654 0.94433 0.94825 1.20240 0.99925 0.94048 0.97640 0.92707 0.85476 0.84525 0.85776 0.83813 0.76667 0.82776 0.87175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.34 13.96 21.45 0.30 -61.04 15 2 C 0.02 1.50 5.47 84.65 0.46 1.96 15 3 Si 1.00 50.50 26.03 68.60 1.79 52.29 15 4 H -0.27 -13.43 7.11 99.48 0.71 -12.72 15 5 H -0.32 -16.41 7.11 99.48 0.71 -15.70 15 6 H -0.26 -12.52 6.54 99.48 0.65 -11.87 15 7 C -0.51 -30.11 9.28 25.60 0.24 -29.88 15 8 H 0.03 1.68 7.98 -2.91 -0.02 1.65 15 9 C 0.23 10.88 2.33 43.42 0.10 10.98 15 10 H 0.04 1.84 7.03 -2.39 -0.02 1.83 15 11 N -0.84 -34.98 6.59 -174.95 -1.15 -36.13 15 12 C -0.12 -4.91 4.85 -20.10 -0.10 -5.01 15 13 C -0.11 -4.02 9.26 22.30 0.21 -3.82 15 14 C -0.13 -3.99 10.08 22.37 0.23 -3.77 15 15 C 0.07 2.03 7.28 39.03 0.28 2.31 15 16 N -0.59 -12.37 6.07 -187.61 -1.14 -13.51 15 17 H 0.43 5.69 8.96 -92.71 -0.83 4.86 15 18 C 0.07 1.36 11.82 83.00 0.98 2.34 15 19 C -0.24 -6.48 11.08 23.51 0.26 -6.22 15 20 C -0.13 -4.58 6.37 -20.20 -0.13 -4.71 15 21 C -0.10 -4.03 9.65 22.23 0.21 -3.82 15 22 H 0.26 16.03 8.31 -92.71 -0.77 15.26 15 23 H 0.33 11.67 9.06 -89.69 -0.81 10.86 15 24 H 0.34 13.49 7.31 -89.70 -0.66 12.83 15 25 H 0.12 4.42 6.63 -2.91 -0.02 4.40 15 26 H 0.14 3.45 8.06 -2.91 -0.02 3.43 15 27 H 0.22 1.82 8.06 -2.91 -0.02 1.80 15 28 H 0.15 3.56 8.06 -2.91 -0.02 3.54 15 29 H 0.11 4.42 8.01 -2.91 -0.02 4.40 15 Total: -1.00 -74.85 248.32 1.38 -73.47 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: -1.16 Total: 24.56 kcal Atomic # 6 Polarization: -42.38 SS G_CDS: 2.75 Total: -39.63 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -1.99 Total: -110.69 kcal Atomic # 14 Polarization: 50.50 SS G_CDS: 1.79 Total: 52.29 kcal Total: -74.85 1.38 -73.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095674993.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.889 kcal (2) G-P(sol) polarization free energy of solvation -74.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds