Wall clock time and date at job start Mon Mar 30 2020 03:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99917 * 2 1 4 4 H 1.48498 * 109.47036 * 240.00327 * 3 2 1 5 5 H 1.48500 * 109.46831 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47009 * 120.00101 * 3 2 1 7 7 C 1.37879 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99754 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00029 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47556 * 59.99494 * 9 7 2 11 11 N 1.46905 * 109.46910 * 299.99533 * 9 7 2 12 12 C 1.50700 * 109.47079 * 179.97438 * 9 7 2 13 13 C 1.38837 * 119.66423 * 79.99571 * 12 9 7 14 14 C 1.36623 * 120.52239 * 179.97438 * 13 12 9 15 15 C 1.39631 * 119.76825 * 0.02562 * 14 13 12 16 16 C 1.46487 * 134.02794 * 180.02562 * 15 14 13 17 17 C 1.34241 * 106.99229 * 179.97438 * 16 15 14 18 18 N 1.36827 * 109.93220 * 359.97438 * 17 16 15 19 19 H 0.96999 * 125.06394 * 180.02562 * 18 17 16 20 20 C 1.37689 * 109.87532 * 0.02562 * 18 17 16 21 21 C 1.37746 * 119.66400 * 259.72453 * 12 9 7 22 22 H 0.96999 * 120.00171 * 359.97438 * 1 2 3 23 23 H 1.00901 * 110.99869 * 300.00472 * 11 9 7 24 24 H 1.00896 * 110.99543 * 63.95595 * 11 9 7 25 25 H 1.07998 * 119.73436 * 359.97438 * 13 12 9 26 26 H 1.08007 * 120.11325 * 180.02562 * 14 13 12 27 27 H 1.07990 * 126.50459 * 359.97438 * 16 15 14 28 28 H 1.08005 * 125.03392 * 180.02562 * 17 16 15 29 29 H 1.07997 * 120.11170 * 0.02562 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6246 -2.5563 -0.8919 11 7 0.4061 -2.5778 1.1975 12 6 2.2304 -3.6446 -0.0027 13 6 2.8362 -4.0317 1.1850 14 6 3.7262 -5.0681 1.2043 15 6 4.0298 -5.7433 0.0204 16 6 4.9103 -6.8651 -0.3148 17 6 4.7880 -7.0790 -1.6343 18 7 3.9008 -6.1865 -2.1714 19 1 3.6490 -6.1456 -3.1072 20 6 3.4188 -5.3549 -1.1856 21 6 2.5111 -4.3004 -1.1811 22 1 -0.4850 0.8400 0.0004 23 1 0.9639 -2.5269 2.0368 24 1 -0.3012 -1.8583 1.1891 25 1 2.6020 -3.5095 2.1008 26 1 4.1933 -5.3640 2.1321 27 1 5.5385 -7.4154 0.3698 28 1 5.3116 -7.8432 -2.1897 29 1 2.0316 -3.9943 -2.0990 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095675013.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:27 Heat of formation + Delta-G solvation = 50.344239 kcal Electronic energy + Delta-G solvation = -13700.405005 eV Core-core repulsion = 11395.294943 eV Total energy + Delta-G solvation = -2305.110062 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.64083 -37.00077 -34.04547 -31.59385 -30.85767 -28.73615 -27.94665 -25.73128 -22.59323 -22.09799 -20.25537 -19.57859 -17.33011 -16.42246 -15.47779 -15.29403 -14.39621 -13.95150 -13.68357 -13.27294 -12.96291 -12.84433 -12.75669 -11.81571 -11.39742 -11.17970 -10.88954 -10.77617 -10.67312 -10.31654 -9.95767 -9.53615 -9.14086 -8.61651 -7.50030 -7.26642 -7.03018 -6.06074 -4.23537 1.80156 2.37401 3.17250 3.25441 3.30193 3.34126 3.55037 4.33080 4.68561 5.13706 5.15129 5.36272 5.63967 5.89567 5.94897 6.04425 6.21405 6.46657 6.51845 6.68056 6.81892 7.15707 7.18777 7.28795 7.36570 7.76448 7.79816 7.88723 7.94978 8.14719 8.70162 8.96409 9.15380 9.48234 10.90441 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.045372 B = 0.007492 C = 0.007261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.971113 B = 3736.556342 C = 3855.050689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.066 3.934 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.056 0.944 9 C 0.241 3.759 10 H 0.045 0.955 11 N -0.849 5.849 12 C 0.001 3.999 13 C -0.123 4.123 14 C -0.085 4.085 15 C -0.132 4.132 16 C -0.205 4.205 17 C 0.030 3.970 18 N -0.602 5.602 19 H 0.410 0.590 20 C 0.099 3.901 21 C -0.145 4.145 22 H 0.266 0.734 23 H 0.312 0.688 24 H 0.355 0.645 25 H 0.119 0.881 26 H 0.111 0.889 27 H 0.137 0.863 28 H 0.161 0.839 29 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.720 -9.941 -1.766 12.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.136 4.136 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.074 0.926 9 C 0.131 3.869 10 H 0.063 0.937 11 N -0.379 5.379 12 C -0.001 4.001 13 C -0.142 4.142 14 C -0.104 4.104 15 C -0.136 4.136 16 C -0.231 4.231 17 C -0.096 4.096 18 N -0.206 5.206 19 H 0.245 0.755 20 C -0.007 4.007 21 C -0.167 4.167 22 H 0.076 0.924 23 H 0.122 0.878 24 H 0.171 0.829 25 H 0.137 0.863 26 H 0.129 0.871 27 H 0.155 0.845 28 H 0.178 0.822 29 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.315 -10.557 -2.167 12.491 hybrid contribution 0.839 1.943 -0.364 2.148 sum 7.154 -8.613 -2.531 11.479 Atomic orbital electron populations 1.69738 1.05838 1.27280 1.50520 1.25020 0.94934 0.99270 0.94422 0.86568 0.79548 0.82602 0.78774 1.20208 1.21223 1.20170 1.21801 0.93690 0.90994 1.51708 0.92574 1.17987 0.88994 0.88161 0.91773 0.93663 1.59523 1.18438 1.56020 1.03959 1.20155 0.94840 0.93983 0.91141 1.20507 0.97720 0.97497 0.98464 1.20171 0.98355 0.96061 0.95788 1.19073 1.01806 0.99543 0.93219 1.21587 1.05396 1.01396 0.94757 1.21593 0.96830 0.96567 0.94613 1.41716 1.39538 1.29790 1.09525 0.75475 1.18286 0.99168 0.95088 0.88195 1.19855 1.01068 0.96660 0.99080 0.92433 0.87827 0.82893 0.86322 0.87065 0.84483 0.82188 0.86883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.69 11.54 55.43 0.64 -24.05 15 2 C 0.07 1.78 5.38 -17.82 -0.10 1.68 15 3 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 15 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 15 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 7 C -0.54 -14.71 8.70 -34.44 -0.30 -15.00 15 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 15 9 C 0.24 6.09 2.94 -70.01 -0.21 5.88 15 10 H 0.05 1.25 7.98 -51.93 -0.41 0.83 15 11 N -0.85 -20.52 9.01 -6.65 -0.06 -20.58 15 12 C 0.00 0.02 4.90 -104.58 -0.51 -0.49 15 13 C -0.12 -2.53 9.21 -39.94 -0.37 -2.90 15 14 C -0.08 -1.58 10.05 -39.65 -0.40 -1.97 15 15 C -0.13 -2.43 6.37 -105.14 -0.67 -3.10 15 16 C -0.21 -3.06 11.08 -37.67 -0.42 -3.48 15 17 C 0.03 0.38 11.81 -16.73 -0.20 0.18 15 18 N -0.60 -8.67 6.07 -10.65 -0.06 -8.74 15 19 H 0.41 4.59 8.96 -40.82 -0.37 4.23 15 20 C 0.10 1.83 7.28 -83.99 -0.61 1.22 15 21 C -0.15 -3.01 9.68 -39.43 -0.38 -3.39 15 22 H 0.27 7.03 8.31 -40.82 -0.34 6.69 15 23 H 0.31 7.13 7.31 -39.29 -0.29 6.84 15 24 H 0.35 9.11 7.08 -39.29 -0.28 8.83 15 25 H 0.12 2.36 6.63 -52.49 -0.35 2.01 15 26 H 0.11 1.74 8.06 -52.48 -0.42 1.32 15 27 H 0.14 1.69 8.06 -52.49 -0.42 1.26 15 28 H 0.16 1.37 8.06 -52.48 -0.42 0.95 15 29 H 0.11 2.23 8.02 -52.49 -0.42 1.81 15 LS Contribution 251.07 15.07 3.78 3.78 Total: -1.00 -29.58 251.07 -7.80 -37.39 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -2.92 Total: 17.53 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -4.16 Total: -21.37 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 0.51 Total: -53.37 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.58 -7.80 -37.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095675013.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.730 kcal (2) G-P(sol) polarization free energy of solvation -29.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds