Wall clock time and date at job start Mon Mar 30 2020 03:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99917 * 2 1 4 4 H 1.48498 * 109.47036 * 240.00327 * 3 2 1 5 5 H 1.48500 * 109.46831 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47009 * 120.00101 * 3 2 1 7 7 C 1.37879 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99754 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00029 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47556 * 59.99494 * 9 7 2 11 11 N 1.46905 * 109.46910 * 299.99533 * 9 7 2 12 12 C 1.50700 * 109.47079 * 179.97438 * 9 7 2 13 13 C 1.38837 * 119.66423 * 79.99571 * 12 9 7 14 14 C 1.36623 * 120.52239 * 179.97438 * 13 12 9 15 15 C 1.39631 * 119.76825 * 0.02562 * 14 13 12 16 16 C 1.46487 * 134.02794 * 180.02562 * 15 14 13 17 17 C 1.34241 * 106.99229 * 179.97438 * 16 15 14 18 18 N 1.36827 * 109.93220 * 359.97438 * 17 16 15 19 19 H 0.96999 * 125.06394 * 180.02562 * 18 17 16 20 20 C 1.37689 * 109.87532 * 0.02562 * 18 17 16 21 21 C 1.37746 * 119.66400 * 259.72453 * 12 9 7 22 22 H 0.96999 * 120.00171 * 359.97438 * 1 2 3 23 23 H 1.00901 * 110.99869 * 300.00472 * 11 9 7 24 24 H 1.00896 * 110.99543 * 63.95595 * 11 9 7 25 25 H 1.07998 * 119.73436 * 359.97438 * 13 12 9 26 26 H 1.08007 * 120.11325 * 180.02562 * 14 13 12 27 27 H 1.07990 * 126.50459 * 359.97438 * 16 15 14 28 28 H 1.08005 * 125.03392 * 180.02562 * 17 16 15 29 29 H 1.07997 * 120.11170 * 0.02562 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6246 -2.5563 -0.8919 11 7 0.4061 -2.5778 1.1975 12 6 2.2304 -3.6446 -0.0027 13 6 2.8362 -4.0317 1.1850 14 6 3.7262 -5.0681 1.2043 15 6 4.0298 -5.7433 0.0204 16 6 4.9103 -6.8651 -0.3148 17 6 4.7880 -7.0790 -1.6343 18 7 3.9008 -6.1865 -2.1714 19 1 3.6490 -6.1456 -3.1072 20 6 3.4188 -5.3549 -1.1856 21 6 2.5111 -4.3004 -1.1811 22 1 -0.4850 0.8400 0.0004 23 1 0.9639 -2.5269 2.0368 24 1 -0.3012 -1.8583 1.1891 25 1 2.6020 -3.5095 2.1008 26 1 4.1933 -5.3640 2.1321 27 1 5.5385 -7.4154 0.3698 28 1 5.3116 -7.8432 -2.1897 29 1 2.0316 -3.9943 -2.0990 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095675013.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:27 Heat of formation + Delta-G solvation = 30.571267 kcal Electronic energy + Delta-G solvation = -13701.262425 eV Core-core repulsion = 11395.294943 eV Total energy + Delta-G solvation = -2305.967482 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.93607 -38.57675 -35.87386 -33.36254 -32.44474 -30.10774 -29.47531 -27.71456 -24.32228 -23.56769 -21.46103 -21.14497 -18.78335 -18.34000 -17.15509 -16.84706 -16.28850 -15.27479 -15.11900 -14.81963 -14.73788 -14.44653 -13.97582 -13.50595 -13.25385 -12.84566 -12.79055 -12.40165 -12.31817 -12.00782 -11.80655 -11.33510 -10.71881 -10.46951 -9.22914 -8.91741 -8.47678 -8.08276 -6.37874 0.39573 0.87451 1.38461 1.38606 1.47546 1.97730 2.36018 2.40902 3.04340 3.16218 3.95622 4.14671 4.25169 4.46972 4.59372 4.66740 4.72431 4.91607 5.03108 5.18133 5.31173 5.37398 5.62663 5.77546 5.86882 5.97472 6.02241 6.18969 6.42038 6.64037 6.85554 6.93314 7.12741 7.38695 8.82532 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.045372 B = 0.007492 C = 0.007261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.971113 B = 3736.556342 C = 3855.050689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.022 3.978 3 Si 0.960 3.040 4 H -0.276 1.276 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.558 4.558 8 H 0.045 0.955 9 C 0.246 3.754 10 H 0.009 0.991 11 N -0.842 5.842 12 C -0.034 4.034 13 C -0.140 4.140 14 C -0.082 4.082 15 C -0.146 4.146 16 C -0.227 4.227 17 C 0.058 3.942 18 N -0.594 5.594 19 H 0.425 0.575 20 C 0.080 3.920 21 C -0.156 4.156 22 H 0.268 0.732 23 H 0.319 0.681 24 H 0.345 0.655 25 H 0.116 0.884 26 H 0.140 0.860 27 H 0.165 0.835 28 H 0.215 0.785 29 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.838 -11.484 -2.159 14.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.178 4.178 3 Si 0.785 3.215 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.196 1.196 7 C -0.598 4.598 8 H 0.063 0.937 9 C 0.136 3.864 10 H 0.027 0.973 11 N -0.371 5.371 12 C -0.035 4.035 13 C -0.160 4.160 14 C -0.101 4.101 15 C -0.151 4.151 16 C -0.251 4.251 17 C -0.068 4.068 18 N -0.198 5.198 19 H 0.263 0.737 20 C -0.027 4.027 21 C -0.177 4.177 22 H 0.077 0.923 23 H 0.130 0.870 24 H 0.159 0.841 25 H 0.134 0.866 26 H 0.158 0.842 27 H 0.183 0.817 28 H 0.231 0.769 29 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.439 -12.119 -2.576 14.990 hybrid contribution 0.234 2.273 -0.321 2.307 sum 8.673 -9.846 -2.897 13.437 Atomic orbital electron populations 1.69840 1.06927 1.28086 1.50718 1.25751 0.95769 1.02312 0.93953 0.85585 0.78377 0.78771 0.78723 1.20116 1.20468 1.19643 1.21983 0.93238 0.92368 1.52176 0.93703 1.17765 0.88936 0.89203 0.90485 0.97336 1.59481 1.18197 1.55276 1.04123 1.19954 0.96099 0.94579 0.92907 1.20498 0.99035 0.98856 0.97599 1.20449 0.97310 0.94951 0.97364 1.19609 1.02147 1.00467 0.92867 1.21965 1.05928 1.00957 0.96283 1.22469 0.94415 0.95523 0.94361 1.41848 1.39139 1.28984 1.09843 0.73673 1.18260 0.99185 0.95285 0.89963 1.19845 1.01909 0.97648 0.98322 0.92251 0.87041 0.84066 0.86625 0.84207 0.81739 0.76866 0.87401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.73 11.54 21.45 0.25 -51.48 15 2 C 0.02 1.23 5.38 84.65 0.46 1.68 15 3 Si 0.96 43.66 29.54 68.60 2.03 45.68 15 4 H -0.28 -12.42 7.11 99.48 0.71 -11.72 15 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 15 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 15 7 C -0.56 -31.32 8.70 25.60 0.22 -31.10 15 8 H 0.04 2.56 7.74 -2.91 -0.02 2.54 15 9 C 0.25 13.09 2.94 43.42 0.13 13.21 15 10 H 0.01 0.51 7.98 -2.39 -0.02 0.49 15 11 N -0.84 -42.41 9.01 -174.94 -1.58 -43.99 15 12 C -0.03 -1.57 4.90 -19.84 -0.10 -1.67 15 13 C -0.14 -5.91 9.21 22.04 0.20 -5.70 15 14 C -0.08 -2.97 10.05 22.23 0.22 -2.75 15 15 C -0.15 -5.10 6.37 -20.20 -0.13 -5.23 15 16 C -0.23 -5.82 11.08 23.51 0.26 -5.56 15 17 C 0.06 1.20 11.81 83.00 0.98 2.19 15 18 N -0.59 -15.28 6.07 -187.60 -1.14 -16.42 15 19 H 0.42 8.26 8.96 -92.71 -0.83 7.43 15 20 C 0.08 2.90 7.28 39.03 0.28 3.18 15 21 C -0.16 -6.64 9.68 22.37 0.22 -6.42 15 22 H 0.27 14.37 8.31 -92.71 -0.77 13.60 15 23 H 0.32 15.14 7.31 -89.69 -0.66 14.48 15 24 H 0.34 18.42 7.08 -89.70 -0.63 17.79 15 25 H 0.12 4.75 6.63 -2.91 -0.02 4.73 15 26 H 0.14 4.10 8.06 -2.91 -0.02 4.07 15 27 H 0.17 3.25 8.06 -2.92 -0.02 3.23 15 28 H 0.21 2.13 8.06 -2.91 -0.02 2.11 15 29 H 0.11 4.49 8.02 -2.91 -0.02 4.47 15 Total: -1.00 -65.48 251.07 1.38 -64.10 By element: Atomic # 1 Polarization: 41.19 SS G_CDS: -0.93 Total: 40.26 kcal Atomic # 6 Polarization: -40.91 SS G_CDS: 2.75 Total: -38.16 kcal Atomic # 7 Polarization: -109.41 SS G_CDS: -2.47 Total: -111.88 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -65.48 1.38 -64.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095675013.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.672 kcal (2) G-P(sol) polarization free energy of solvation -65.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds