Wall clock time and date at job start Mon Mar 30 2020 02:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00343 * 2 1 4 4 H 1.48501 * 109.47492 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47233 * 300.00718 * 3 2 1 6 6 H 1.48503 * 109.47098 * 60.00454 * 3 2 1 7 7 C 1.37882 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00035 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00002 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47751 * 59.99975 * 9 7 2 11 11 N 1.46899 * 109.47272 * 300.00101 * 9 7 2 12 12 C 1.50701 * 109.47155 * 180.02562 * 9 7 2 13 13 C 1.37789 * 120.11251 * 100.00955 * 12 9 7 14 14 C 1.38788 * 120.66660 * 180.02562 * 13 12 9 15 15 C 1.36670 * 120.52797 * 359.95958 * 14 13 12 16 16 C 1.39586 * 119.76411 * 0.02562 * 15 14 13 17 17 C 1.46495 * 134.03774 * 180.29289 * 16 15 14 18 18 C 1.34233 * 107.00046 * 180.13442 * 17 16 15 19 19 N 1.36837 * 109.93996 * 359.59422 * 18 17 16 20 20 H 0.97000 * 125.06572 * 180.30481 * 19 18 17 21 21 C 1.37694 * 109.87181 * 0.26491 * 19 18 17 22 22 H 0.97000 * 119.99707 * 359.97438 * 1 2 3 23 23 H 1.00906 * 110.99609 * 300.00009 * 11 9 7 24 24 H 1.00897 * 110.99990 * 63.94971 * 11 9 7 25 25 H 1.07996 * 119.67090 * 0.02562 * 13 12 9 26 26 H 1.08000 * 119.73950 * 179.97438 * 14 13 12 27 27 H 1.07997 * 120.11709 * 180.02562 * 15 14 13 28 28 H 1.07997 * 126.49894 * 0.02562 * 17 16 15 29 29 H 1.08002 * 125.03336 * 179.86397 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6239 -2.5568 -0.8902 11 7 0.4068 -2.5772 1.1992 12 6 2.2302 -3.6447 -0.0005 13 6 2.5219 -4.3047 1.1733 14 6 3.4223 -5.3608 1.1866 15 6 4.0352 -5.7651 0.0338 16 6 3.7542 -5.1108 -1.1667 17 6 4.2104 -5.2780 -2.5487 18 6 3.5888 -4.3421 -3.2832 19 7 2.7648 -3.5947 -2.4864 20 1 2.2085 -2.8615 -2.7925 21 6 2.8425 -4.0391 -1.1854 22 1 -0.4850 0.8401 0.0004 23 1 0.9652 -2.5260 2.0381 24 1 -0.3004 -1.8577 1.1911 25 1 2.0451 -3.9973 2.0922 26 1 3.6402 -5.8673 2.1152 27 1 4.7344 -6.5880 0.0518 28 1 4.9147 -6.0136 -2.9080 29 1 3.7165 -4.2026 -4.3465 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104502212.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:35 Heat of formation + Delta-G solvation = 31.585939 kcal Electronic energy + Delta-G solvation = -13998.305163 eV Core-core repulsion = 11692.381680 eV Total energy + Delta-G solvation = -2305.923483 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.93500 -38.15756 -36.35318 -33.69886 -31.77021 -30.20226 -29.17208 -27.96887 -24.77923 -22.62430 -22.12143 -20.78253 -18.73767 -18.60693 -16.96097 -16.65215 -16.21215 -15.71864 -15.26152 -14.82791 -14.62860 -14.11792 -13.68542 -13.55202 -13.14444 -13.01755 -12.87296 -12.50897 -12.33864 -12.01850 -11.91781 -11.22455 -10.80045 -10.28249 -9.27119 -8.94506 -8.42469 -8.09480 -6.43141 0.46754 0.92379 1.30820 1.35107 1.45770 2.01779 2.32495 2.52081 2.99603 3.21107 4.02100 4.15651 4.37865 4.39728 4.53772 4.68649 4.81327 4.93957 5.08848 5.18464 5.35232 5.46170 5.58410 5.86499 5.89694 6.01640 6.04640 6.12535 6.50200 6.60169 6.82832 6.90618 7.07723 7.34244 8.77163 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.031720 B = 0.010193 C = 0.008819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.519340 B = 2746.438202 C = 3174.238608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.026 3.974 3 Si 0.957 3.043 4 H -0.278 1.278 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.552 4.552 8 H 0.038 0.962 9 C 0.252 3.748 10 H 0.006 0.994 11 N -0.842 5.842 12 C -0.072 4.072 13 C -0.122 4.122 14 C -0.145 4.145 15 C -0.103 4.103 16 C -0.134 4.134 17 C -0.228 4.228 18 C 0.051 3.949 19 N -0.594 5.594 20 H 0.416 0.584 21 C 0.070 3.930 22 H 0.268 0.732 23 H 0.320 0.680 24 H 0.344 0.656 25 H 0.122 0.878 26 H 0.144 0.856 27 H 0.143 0.857 28 H 0.170 0.830 29 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.863 -7.489 -3.449 10.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.175 4.175 3 Si 0.783 3.217 4 H -0.202 1.202 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.592 4.592 8 H 0.057 0.943 9 C 0.142 3.858 10 H 0.024 0.976 11 N -0.371 5.371 12 C -0.075 4.075 13 C -0.141 4.141 14 C -0.164 4.164 15 C -0.122 4.122 16 C -0.139 4.139 17 C -0.253 4.253 18 C -0.075 4.075 19 N -0.196 5.196 20 H 0.253 0.747 21 C -0.038 4.038 22 H 0.078 0.922 23 H 0.130 0.870 24 H 0.159 0.841 25 H 0.140 0.860 26 H 0.161 0.839 27 H 0.161 0.839 28 H 0.187 0.813 29 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 6.414 -8.004 -3.801 10.938 hybrid contribution 0.153 2.528 0.102 2.534 sum 6.567 -5.476 -3.699 9.316 Atomic orbital electron populations 1.69844 1.06807 1.27970 1.50664 1.25694 0.95687 1.02088 0.93982 0.85528 0.78570 0.79639 0.77976 1.20244 1.20207 1.20222 1.21938 0.92831 0.92262 1.52138 0.94327 1.17598 0.88737 0.89136 0.90339 0.97605 1.59489 1.18181 1.55209 1.04215 1.19502 0.98813 0.97682 0.91473 1.20774 0.99366 0.97072 0.96918 1.20876 0.98345 0.98126 0.99025 1.20435 1.00867 1.00345 0.90512 1.19689 1.00352 0.97984 0.95830 1.21937 1.08068 1.04935 0.90351 1.22495 0.93685 0.93299 0.98048 1.42026 1.39888 1.31671 1.05989 0.74747 1.18370 1.01277 0.98182 0.85987 0.92211 0.86979 0.84109 0.86001 0.83861 0.83886 0.81258 0.77626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.12 11.54 21.45 0.25 -49.87 15 2 C 0.03 1.39 5.38 84.66 0.46 1.85 15 3 Si 0.96 42.88 29.54 68.60 2.03 44.91 15 4 H -0.28 -12.55 7.11 99.48 0.71 -11.85 15 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 15 6 H -0.28 -12.10 7.11 99.48 0.71 -11.39 15 7 C -0.55 -30.10 8.71 25.60 0.22 -29.88 15 8 H 0.04 2.20 7.74 -2.91 -0.02 2.17 15 9 C 0.25 13.01 2.96 43.42 0.13 13.14 15 10 H 0.01 0.35 8.14 -2.39 -0.02 0.33 15 11 N -0.84 -41.44 8.66 -174.96 -1.52 -42.95 15 12 C -0.07 -3.34 5.04 -19.77 -0.10 -3.44 15 13 C -0.12 -5.03 9.24 22.29 0.21 -4.82 15 14 C -0.14 -4.98 9.97 22.03 0.22 -4.76 15 15 C -0.10 -3.44 10.05 22.23 0.22 -3.22 15 16 C -0.13 -4.97 6.37 -20.20 -0.13 -5.10 15 17 C -0.23 -6.76 11.08 23.51 0.26 -6.49 15 18 C 0.05 1.45 11.81 83.00 0.98 2.43 15 19 N -0.59 -21.78 6.07 -187.60 -1.14 -22.92 15 20 H 0.42 15.09 8.96 -92.71 -0.83 14.26 15 21 C 0.07 2.96 6.97 39.03 0.27 3.23 15 22 H 0.27 13.95 8.31 -92.71 -0.77 13.18 15 23 H 0.32 14.89 7.28 -89.69 -0.65 14.23 15 24 H 0.34 18.03 7.08 -89.70 -0.63 17.40 15 25 H 0.12 4.88 6.22 -2.91 -0.02 4.86 15 26 H 0.14 3.86 8.06 -2.91 -0.02 3.84 15 27 H 0.14 3.69 8.06 -2.91 -0.02 3.67 15 28 H 0.17 3.77 8.06 -2.91 -0.02 3.74 15 29 H 0.21 3.69 8.06 -2.91 -0.02 3.66 15 Total: -1.00 -62.56 250.68 1.44 -61.12 By element: Atomic # 1 Polarization: 47.70 SS G_CDS: -0.92 Total: 46.77 kcal Atomic # 6 Polarization: -39.80 SS G_CDS: 2.74 Total: -37.06 kcal Atomic # 7 Polarization: -113.34 SS G_CDS: -2.41 Total: -115.74 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -62.56 1.44 -61.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104502212.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.705 kcal (2) G-P(sol) polarization free energy of solvation -62.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds