Wall clock time and date at job start Mon Mar 30 2020 03:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.50702 * 109.47276 * 58.41209 * 3 2 1 5 5 C 1.38256 * 119.99963 * 264.72588 * 4 3 2 6 6 C 1.38218 * 120.00086 * 180.34241 * 5 4 3 7 7 C 1.38254 * 119.99721 * 359.90888 * 6 5 4 8 8 C 1.38212 * 120.00284 * 0.04312 * 7 6 5 9 9 C 1.38215 * 120.00248 * 84.99638 * 4 3 2 10 10 C 1.50701 * 119.99797 * 359.70206 * 9 4 3 11 11 H 1.09004 * 109.46869 * 325.00260 * 10 9 4 12 12 N 1.46897 * 109.47269 * 204.99896 * 10 9 4 13 13 C 1.50702 * 109.47022 * 84.99640 * 10 9 4 14 14 H 1.08001 * 119.99932 * 0.02562 * 13 10 9 15 15 C 1.37877 * 120.00154 * 179.97438 * 13 10 9 16 16 N 1.31514 * 119.99690 * 0.02562 * 15 13 10 17 17 Si 1.86797 * 120.00301 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47099 * 89.99846 * 17 15 13 19 19 H 1.48501 * 109.47086 * 210.00224 * 17 15 13 20 20 H 1.48502 * 109.47009 * 330.00397 * 17 15 13 21 21 H 1.09004 * 109.47484 * 298.41272 * 3 2 1 22 22 H 1.08996 * 109.47159 * 178.40866 * 3 2 1 23 23 H 1.08001 * 120.00211 * 0.27430 * 5 4 3 24 24 H 1.07997 * 119.99809 * 179.97438 * 6 5 4 25 25 H 1.07999 * 119.99740 * 180.02562 * 7 6 5 26 26 H 1.08001 * 119.99798 * 180.02562 * 8 7 6 27 27 H 1.00902 * 111.00117 * 300.00259 * 12 10 9 28 28 H 1.00902 * 110.99660 * 63.95283 * 12 10 9 29 29 H 0.97007 * 119.99710 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1107 -0.7434 -1.2103 5 6 3.4455 -2.0810 -1.1097 6 6 3.9133 -2.7616 -2.2180 7 6 4.0446 -2.1052 -3.4277 8 6 3.7089 -0.7682 -3.5285 9 6 3.2423 -0.0871 -2.4196 10 6 2.8768 1.3708 -2.5294 11 1 2.0257 1.5817 -1.8819 12 7 2.5233 1.6835 -3.9205 13 6 4.0508 2.2162 -2.1072 14 1 4.9698 1.7449 -1.7914 15 6 3.9520 3.5913 -2.1251 16 7 2.8331 4.1651 -2.5102 17 14 5.4073 4.6392 -1.6024 18 1 6.2560 4.9329 -2.7852 19 1 4.9157 5.9125 -1.0174 20 1 6.2074 3.9051 -0.5893 21 1 2.9716 -0.4882 0.9039 22 1 2.9708 1.0280 -0.0285 23 1 3.3426 -2.5939 -0.1648 24 1 4.1752 -3.8063 -2.1393 25 1 4.4097 -2.6371 -4.2938 26 1 3.8111 -0.2556 -4.4736 27 1 3.2966 1.4962 -4.5410 28 1 1.6990 1.1768 -4.2067 29 1 2.7637 5.1326 -2.5231 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104502219.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:55 Heat of formation + Delta-G solvation = 29.669979 kcal Electronic energy + Delta-G solvation = -13885.931918 eV Core-core repulsion = 11579.925352 eV Total energy + Delta-G solvation = -2306.006565 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.55541 -37.53423 -36.31052 -33.76486 -33.62670 -30.64223 -28.62986 -27.92345 -24.65576 -22.57847 -21.40058 -18.67807 -18.30531 -17.23534 -16.69925 -16.50688 -15.78132 -15.75820 -14.70006 -14.59842 -14.39221 -14.25263 -13.97143 -13.38622 -13.20565 -13.07048 -12.72077 -12.65874 -12.41496 -12.15450 -11.67550 -11.41144 -11.20333 -10.52150 -9.60979 -9.35365 -8.87672 -7.93351 -6.15304 0.52729 0.69454 1.47547 1.50317 1.58397 1.83453 1.86244 2.50619 2.92496 3.30545 3.42583 4.01983 4.14279 4.28481 4.37380 4.44822 4.56580 4.77865 4.86390 4.99653 5.22695 5.29265 5.41868 5.70207 5.74452 5.83189 5.92044 6.19306 6.29855 6.64370 6.71135 7.15000 7.25540 7.58212 9.09562 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.025345 B = 0.010901 C = 0.009433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.507274 B = 2567.983739 C = 2967.728789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C 0.242 3.758 3 C 0.013 3.987 4 C -0.105 4.105 5 C -0.105 4.105 6 C -0.140 4.140 7 C -0.116 4.116 8 C -0.147 4.147 9 C -0.090 4.090 10 C 0.255 3.745 11 H 0.016 0.984 12 N -0.826 5.826 13 C -0.530 4.530 14 H 0.055 0.945 15 C 0.036 3.964 16 N -0.883 5.883 17 Si 0.944 3.056 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.261 1.261 21 H 0.157 0.843 22 H 0.118 0.882 23 H 0.153 0.847 24 H 0.150 0.850 25 H 0.140 0.860 26 H 0.113 0.887 27 H 0.324 0.676 28 H 0.306 0.694 29 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.254 -12.228 2.458 13.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.177 5.177 2 C -0.074 4.074 3 C -0.027 4.027 4 C -0.107 4.107 5 C -0.122 4.122 6 C -0.158 4.158 7 C -0.134 4.134 8 C -0.165 4.165 9 C -0.092 4.092 10 C 0.145 3.855 11 H 0.034 0.966 12 N -0.353 5.353 13 C -0.569 4.569 14 H 0.074 0.926 15 C -0.168 4.168 16 N -0.519 5.519 17 Si 0.770 3.230 18 H -0.209 1.209 19 H -0.217 1.217 20 H -0.185 1.185 21 H 0.175 0.825 22 H 0.136 0.864 23 H 0.170 0.830 24 H 0.168 0.832 25 H 0.158 0.842 26 H 0.131 0.869 27 H 0.138 0.862 28 H 0.117 0.883 29 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.346 -11.277 2.693 12.067 hybrid contribution 1.047 0.164 -0.323 1.108 sum 4.392 -11.113 2.370 12.182 Atomic orbital electron populations 1.81117 1.14491 1.11304 1.10809 1.29585 0.95538 0.91034 0.91203 1.18463 0.79775 1.04995 0.99442 1.19405 1.02941 0.94772 0.93572 1.21375 0.97990 0.92576 1.00297 1.21375 1.00978 1.01018 0.92452 1.21399 0.99111 0.93836 0.99004 1.21074 1.01575 0.95507 0.98347 1.21402 0.95754 0.98280 0.93766 1.17958 0.94834 0.85360 0.87305 0.96625 1.59016 1.07101 1.64922 1.04275 1.21067 0.98921 0.90834 1.46036 0.92649 1.25678 0.97341 0.99276 0.94473 1.70256 1.26806 1.09338 1.45537 0.85807 0.80338 0.78381 0.78501 1.20905 1.21671 1.18506 0.82548 0.86420 0.82971 0.83210 0.84238 0.86946 0.86248 0.88320 0.93821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -20.27 18.54 20.00 0.37 -19.90 15 2 C 0.24 8.63 14.57 89.44 1.30 9.94 15 3 C 0.01 0.37 5.19 28.04 0.15 0.52 15 4 C -0.10 -3.38 5.09 -19.86 -0.10 -3.48 15 5 C -0.10 -2.63 9.68 22.27 0.22 -2.41 15 6 C -0.14 -3.32 10.05 22.27 0.22 -3.10 15 7 C -0.12 -3.11 10.05 22.27 0.22 -2.89 15 8 C -0.15 -4.99 9.27 22.27 0.21 -4.79 15 9 C -0.09 -3.44 4.98 -19.87 -0.10 -3.54 15 10 C 0.26 12.02 2.18 43.42 0.09 12.11 15 11 H 0.02 0.85 6.40 -2.39 -0.02 0.83 15 12 N -0.83 -38.57 8.13 -174.95 -1.42 -39.99 15 13 C -0.53 -27.03 7.90 25.60 0.20 -26.83 15 14 H 0.06 2.78 7.74 -2.91 -0.02 2.76 15 15 C 0.04 1.91 5.39 84.65 0.46 2.37 15 16 N -0.88 -51.00 12.77 21.45 0.27 -50.73 15 17 Si 0.94 41.99 29.54 68.60 2.03 44.01 15 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 15 19 H -0.29 -12.99 7.11 99.48 0.71 -12.29 15 20 H -0.26 -10.96 7.11 99.48 0.71 -10.25 15 21 H 0.16 3.00 8.05 -2.38 -0.02 2.98 15 22 H 0.12 4.13 6.42 -2.39 -0.02 4.11 15 23 H 0.15 2.70 8.06 -2.91 -0.02 2.68 15 24 H 0.15 2.47 8.06 -2.91 -0.02 2.45 15 25 H 0.14 2.93 8.06 -2.91 -0.02 2.90 15 26 H 0.11 3.81 6.29 -2.91 -0.02 3.79 15 27 H 0.32 14.21 7.20 -89.69 -0.65 13.56 15 28 H 0.31 13.24 9.06 -89.69 -0.81 12.42 15 29 H 0.25 14.12 8.31 -92.70 -0.77 13.35 15 Total: -1.00 -65.12 258.28 3.85 -61.27 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: -0.27 Total: 27.43 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: 2.87 Total: -22.10 kcal Atomic # 7 Polarization: -109.84 SS G_CDS: -0.78 Total: -110.61 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Total: -65.12 3.85 -61.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104502219.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.942 kcal (2) G-P(sol) polarization free energy of solvation -65.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds