Wall clock time and date at job start Mon Mar 30 2020 03:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.50697 * 109.47230 * 347.62290 * 3 2 1 5 5 C 1.38259 * 119.99954 * 265.21084 * 4 3 2 6 6 C 1.38212 * 119.99962 * 180.22980 * 5 4 3 7 7 C 1.38258 * 120.00248 * 359.81192 * 6 5 4 8 8 C 1.38217 * 119.99891 * 359.97438 * 7 6 5 9 9 C 1.38219 * 120.00327 * 84.99562 * 4 3 2 10 10 C 1.50696 * 119.99716 * 0.02562 * 9 4 3 11 11 H 1.09006 * 109.47511 * 39.72282 * 10 9 4 12 12 N 1.46894 * 109.47259 * 159.72624 * 10 9 4 13 13 C 1.50706 * 109.47259 * 279.72277 * 10 9 4 14 14 H 1.08005 * 119.99758 * 0.02562 * 13 10 9 15 15 C 1.37871 * 120.00102 * 180.02562 * 13 10 9 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.47057 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 300.00068 * 17 15 13 20 20 H 1.48504 * 109.47102 * 60.00417 * 17 15 13 21 21 H 1.08990 * 109.47198 * 227.61997 * 3 2 1 22 22 H 1.08998 * 109.46855 * 107.61733 * 3 2 1 23 23 H 1.08000 * 120.00170 * 0.06516 * 5 4 3 24 24 H 1.07999 * 119.99948 * 179.83176 * 6 5 4 25 25 H 1.07996 * 120.00373 * 179.97438 * 7 6 5 26 26 H 1.07999 * 119.99957 * 180.02562 * 8 7 6 27 27 H 1.00907 * 110.99654 * 296.04440 * 12 10 9 28 28 H 1.00901 * 111.00146 * 59.99612 * 12 10 9 29 29 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1110 -1.3869 0.3045 5 6 3.4359 -1.7350 1.6025 6 6 3.9017 -3.0061 1.8811 7 6 4.0391 -3.9307 0.8624 8 6 3.7102 -3.5841 -0.4345 9 6 3.2434 -2.3129 -0.7130 10 6 2.8853 -1.9347 -2.1271 11 1 3.2199 -0.9167 -2.3269 12 7 3.5415 -2.8583 -3.0621 13 6 1.3911 -2.0165 -2.3060 14 1 0.7636 -2.3123 -1.4782 15 6 0.8253 -1.7137 -3.5262 16 7 1.5894 -1.3540 -4.5343 17 14 -1.0267 -1.8158 -3.7480 18 1 -1.3796 -1.4431 -5.1415 19 1 -1.4822 -3.2027 -3.4756 20 1 -1.6906 -0.8821 -2.8032 21 1 2.9711 0.6934 0.7590 22 1 2.9712 0.3119 -0.9795 23 1 3.3282 -1.0129 2.3984 24 1 4.1580 -3.2772 2.8946 25 1 4.4035 -4.9238 1.0800 26 1 3.8172 -4.3065 -1.2302 27 1 4.5457 -2.7755 -3.0072 28 1 3.2475 -3.8093 -2.8972 29 1 2.5512 -1.3014 -4.4192 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104502222.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:56 Heat of formation + Delta-G solvation = 26.196022 kcal Electronic energy + Delta-G solvation = -14072.102640 eV Core-core repulsion = 11765.945433 eV Total energy + Delta-G solvation = -2306.157207 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.64498 -37.36724 -36.65975 -33.79552 -33.52583 -30.71038 -28.66212 -27.55438 -24.62791 -22.62504 -21.66373 -19.05032 -18.33574 -17.48963 -16.78460 -16.06694 -15.93691 -15.65294 -15.00742 -14.67834 -14.52571 -14.00051 -13.85346 -13.71181 -13.15777 -13.03850 -12.78043 -12.63926 -12.35790 -12.04164 -11.73234 -11.53824 -10.84455 -10.48891 -9.66613 -9.42184 -9.22124 -8.33236 -6.18198 0.47008 0.62757 1.44858 1.51583 1.69029 2.01727 2.08873 2.54850 2.90925 3.32389 3.53285 3.97948 4.07343 4.19250 4.27007 4.29545 4.48991 4.62773 4.78911 4.90027 5.12920 5.20601 5.26867 5.64189 5.69404 5.80500 5.98101 6.21442 6.30074 6.74414 6.84409 6.86623 7.11262 7.66817 9.03257 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.028551 B = 0.012105 C = 0.009874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.474343 B = 2312.563290 C = 2834.937270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C 0.244 3.756 3 C 0.023 3.977 4 C -0.105 4.105 5 C -0.104 4.104 6 C -0.140 4.140 7 C -0.116 4.116 8 C -0.148 4.148 9 C -0.085 4.085 10 C 0.240 3.760 11 H 0.028 0.972 12 N -0.840 5.840 13 C -0.586 4.586 14 H 0.022 0.978 15 C 0.004 3.996 16 N -0.919 5.919 17 Si 1.079 2.921 18 H -0.281 1.281 19 H -0.281 1.281 20 H -0.291 1.291 21 H 0.157 0.843 22 H 0.110 0.890 23 H 0.153 0.847 24 H 0.151 0.849 25 H 0.140 0.860 26 H 0.113 0.887 27 H 0.320 0.680 28 H 0.329 0.671 29 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.672 -1.096 12.322 15.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.178 5.178 2 C -0.072 4.072 3 C -0.016 4.016 4 C -0.107 4.107 5 C -0.122 4.122 6 C -0.157 4.157 7 C -0.134 4.134 8 C -0.166 4.166 9 C -0.088 4.088 10 C 0.130 3.870 11 H 0.045 0.955 12 N -0.369 5.369 13 C -0.625 4.625 14 H 0.041 0.959 15 C -0.201 4.201 16 N -0.556 5.556 17 Si 0.906 3.094 18 H -0.207 1.207 19 H -0.207 1.207 20 H -0.217 1.217 21 H 0.175 0.825 22 H 0.127 0.873 23 H 0.170 0.830 24 H 0.168 0.832 25 H 0.158 0.842 26 H 0.131 0.869 27 H 0.133 0.867 28 H 0.142 0.858 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.386 -0.461 10.611 11.909 hybrid contribution 1.733 -0.872 1.428 2.409 sum 7.120 -1.333 12.040 14.050 Atomic orbital electron populations 1.81066 1.14927 1.10469 1.11349 1.29330 0.95530 0.91320 0.91010 1.18311 0.80203 0.96391 1.06743 1.19439 1.02358 0.94876 0.94051 1.21379 0.97946 0.97725 0.95148 1.21390 1.00887 0.93392 1.00072 1.21403 0.99221 1.00449 0.92279 1.21083 1.01824 0.95866 0.97874 1.21167 0.94953 0.94363 0.98283 1.18116 0.93382 0.92091 0.83376 0.95462 1.59169 1.09422 1.10162 1.58188 1.21666 0.91092 1.51639 0.98076 0.95923 1.26226 1.07805 0.93295 0.92800 1.70648 1.08576 1.43265 1.33092 0.83418 0.73350 0.76890 0.75787 1.20673 1.20658 1.21743 0.82531 0.87258 0.82956 0.83167 0.84193 0.86861 0.86749 0.85771 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.91 18.54 20.01 0.37 -22.54 15 2 C 0.24 9.57 13.55 89.44 1.21 10.78 15 3 C 0.02 0.67 5.33 28.04 0.15 0.82 15 4 C -0.11 -3.35 5.08 -19.86 -0.10 -3.45 15 5 C -0.10 -2.60 9.68 22.27 0.22 -2.38 15 6 C -0.14 -3.28 10.05 22.27 0.22 -3.05 15 7 C -0.12 -3.07 10.05 22.27 0.22 -2.84 15 8 C -0.15 -4.93 9.25 22.27 0.21 -4.73 15 9 C -0.09 -3.21 5.01 -19.87 -0.10 -3.31 15 10 C 0.24 10.88 1.94 43.42 0.08 10.97 15 11 H 0.03 1.33 6.32 -2.38 -0.02 1.32 15 12 N -0.84 -36.20 7.27 -174.95 -1.27 -37.47 15 13 C -0.59 -31.56 7.07 25.60 0.18 -31.38 15 14 H 0.02 1.30 7.46 -2.91 -0.02 1.28 15 15 C 0.00 0.23 5.39 84.65 0.46 0.69 15 16 N -0.92 -55.19 13.51 21.45 0.29 -54.90 15 17 Si 1.08 54.46 29.90 68.60 2.05 56.52 15 18 H -0.28 -13.99 7.11 99.48 0.71 -13.29 15 19 H -0.28 -13.56 7.11 99.48 0.71 -12.85 15 20 H -0.29 -14.89 7.11 99.48 0.71 -14.19 15 21 H 0.16 2.83 8.05 -2.39 -0.02 2.81 15 22 H 0.11 3.45 6.32 -2.39 -0.02 3.43 15 23 H 0.15 2.70 8.06 -2.91 -0.02 2.68 15 24 H 0.15 2.46 8.06 -2.91 -0.02 2.43 15 25 H 0.14 2.89 8.06 -2.91 -0.02 2.87 15 26 H 0.11 3.72 6.25 -2.91 -0.02 3.70 15 27 H 0.32 11.85 9.06 -89.69 -0.81 11.04 15 28 H 0.33 13.89 7.28 -89.69 -0.65 13.24 15 29 H 0.28 16.79 6.39 -92.71 -0.59 16.20 15 Total: -1.00 -69.73 254.22 4.09 -65.63 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -0.10 Total: 20.67 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: 2.75 Total: -27.90 kcal Atomic # 7 Polarization: -114.31 SS G_CDS: -0.61 Total: -114.92 kcal Atomic # 14 Polarization: 54.46 SS G_CDS: 2.05 Total: 56.52 kcal Total: -69.73 4.09 -65.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104502222.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.829 kcal (2) G-P(sol) polarization free energy of solvation -69.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds