Wall clock time and date at job start Mon Mar 30 2020 03:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.50699 * 109.47093 * 201.07763 * 3 2 1 5 5 C 1.38251 * 120.00238 * 269.73099 * 4 3 2 6 6 C 1.38216 * 119.99810 * 179.76742 * 5 4 3 7 7 C 1.38248 * 120.00068 * 0.50328 * 6 5 4 8 8 C 1.38215 * 120.00294 * 359.74695 * 7 6 5 9 9 C 1.50700 * 120.00323 * 179.97438 * 8 7 6 10 10 H 1.09009 * 109.46899 * 160.02277 * 9 8 7 11 11 N 1.46893 * 109.47164 * 40.02690 * 9 8 7 12 12 C 1.50697 * 109.47218 * 280.02084 * 9 8 7 13 13 H 1.07998 * 119.99620 * 34.91041 * 12 9 8 14 14 C 1.37874 * 120.00371 * 214.91440 * 12 9 8 15 15 N 1.31507 * 120.00301 * 184.79308 * 14 12 9 16 16 Si 1.86800 * 119.99882 * 4.79326 * 14 12 9 17 17 H 1.48504 * 109.46921 * 84.87304 * 16 14 12 18 18 H 1.48494 * 109.47363 * 204.87692 * 16 14 12 19 19 H 1.48507 * 109.47267 * 324.87872 * 16 14 12 20 20 C 1.38217 * 119.99400 * 89.99956 * 4 3 2 21 21 H 1.08995 * 109.47014 * 321.08435 * 3 2 1 22 22 H 1.09005 * 109.47010 * 81.07797 * 3 2 1 23 23 H 1.08000 * 120.00159 * 359.97438 * 5 4 3 24 24 H 1.08008 * 120.00030 * 180.23156 * 6 5 4 25 25 H 1.08001 * 120.00170 * 179.72806 * 7 6 5 26 26 H 1.00901 * 111.00224 * 173.83309 * 11 9 8 27 27 H 1.00900 * 110.99737 * 297.78499 * 11 9 8 28 28 H 0.97000 * 120.00542 * 179.97438 * 15 14 12 29 29 H 1.07996 * 120.00528 * 0.02562 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1097 1.3266 0.5110 5 6 3.3450 2.3637 -0.3725 6 6 3.8006 3.5813 0.0968 7 6 4.0309 3.7589 1.4484 8 6 3.8007 2.7205 2.3310 9 6 4.0523 2.9139 3.8042 10 1 3.5030 2.1602 4.3686 11 7 3.6007 4.2525 4.2065 12 6 5.5266 2.7757 4.0844 13 1 6.2486 3.1223 3.3599 14 6 5.9536 2.2068 5.2655 15 7 7.2365 2.1715 5.5523 16 14 4.7097 1.4862 6.4583 17 1 4.3951 0.0900 6.0619 18 1 5.2769 1.4953 7.8306 19 1 3.4679 2.3002 6.4305 20 6 3.3400 1.5041 1.8622 21 1 2.9717 -0.7987 0.6455 22 1 2.9714 -0.1586 -1.0153 23 1 3.1696 2.2235 -1.4289 24 1 3.9808 4.3927 -0.5929 25 1 4.3911 4.7090 1.8146 26 1 3.6653 4.3706 5.2065 27 1 4.1204 4.9698 3.7234 28 1 7.5369 1.7717 6.3834 29 1 3.1607 0.6925 2.5518 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104502227.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:09 Heat of formation + Delta-G solvation = 40.560301 kcal Electronic energy + Delta-G solvation = -13484.868784 eV Core-core repulsion = 11179.334459 eV Total energy + Delta-G solvation = -2305.534325 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.13444 -36.58322 -34.94563 -32.50375 -31.80102 -29.95109 -27.38517 -26.26656 -22.87456 -21.75398 -19.66703 -17.42436 -17.21880 -16.20176 -15.37442 -14.94451 -14.42552 -14.28607 -13.69397 -13.29526 -12.93340 -12.80551 -12.61145 -12.10173 -12.09405 -11.68012 -11.49144 -11.28647 -11.06971 -10.62979 -10.47155 -9.96033 -9.57180 -8.81161 -8.36260 -8.18227 -7.46659 -6.27948 -4.31686 1.76680 1.98366 2.85522 2.87608 3.15718 3.25535 3.27096 4.04395 4.23169 4.48575 4.96852 5.07450 5.08431 5.40875 5.48918 5.57113 5.67542 5.97389 6.03641 6.25510 6.31039 6.55828 6.73179 6.91555 7.03645 7.30858 7.46839 7.53364 7.64762 8.17434 8.28294 8.51546 8.78328 9.33170 10.84378 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.030250 B = 0.008683 C = 0.007731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.394420 B = 3223.858998 C = 3621.117090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.216 3.784 3 C 0.019 3.981 4 C -0.100 4.100 5 C -0.132 4.132 6 C -0.122 4.122 7 C -0.103 4.103 8 C -0.016 4.016 9 C 0.205 3.795 10 H 0.051 0.949 11 N -0.852 5.852 12 C -0.544 4.544 13 H 0.075 0.925 14 C 0.078 3.922 15 N -0.889 5.889 16 Si 0.873 3.127 17 H -0.273 1.273 18 H -0.287 1.287 19 H -0.261 1.261 20 C -0.111 4.111 21 H 0.117 0.883 22 H 0.115 0.885 23 H 0.114 0.886 24 H 0.115 0.885 25 H 0.118 0.882 26 H 0.329 0.671 27 H 0.327 0.673 28 H 0.267 0.733 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.959 -1.568 -8.704 10.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.101 4.101 3 C -0.021 4.021 4 C -0.102 4.102 5 C -0.150 4.150 6 C -0.140 4.140 7 C -0.121 4.121 8 C -0.017 4.017 9 C 0.096 3.904 10 H 0.068 0.932 11 N -0.380 5.380 12 C -0.584 4.584 13 H 0.093 0.907 14 C -0.126 4.126 15 N -0.525 5.525 16 Si 0.699 3.301 17 H -0.198 1.198 18 H -0.213 1.213 19 H -0.185 1.185 20 C -0.129 4.129 21 H 0.135 0.865 22 H 0.133 0.867 23 H 0.132 0.868 24 H 0.133 0.867 25 H 0.136 0.864 26 H 0.141 0.859 27 H 0.138 0.862 28 H 0.077 0.923 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.245 -1.861 -8.868 11.602 hybrid contribution 1.111 -0.331 1.105 1.601 sum -6.134 -2.192 -7.763 10.134 Atomic orbital electron populations 1.81177 1.13082 1.08913 1.09136 1.29188 0.95166 0.92833 0.92919 1.18166 0.81442 0.97741 1.04719 1.19208 1.02955 0.94013 0.93986 1.20755 1.02362 0.93379 0.98541 1.21015 1.00415 0.96954 0.95649 1.20959 0.99432 0.99169 0.92557 1.20152 0.91991 0.92267 0.97252 1.18457 0.94704 0.89260 0.87966 0.93157 1.59614 1.62289 1.05294 1.10823 1.21600 0.90553 1.41775 1.04453 0.90669 1.25089 0.95115 0.94796 0.97634 1.69897 1.14069 1.43789 1.24780 0.86918 0.82088 0.80511 0.80564 1.19837 1.21282 1.18538 1.20863 1.00213 0.97740 0.94106 0.86549 0.86746 0.86781 0.86732 0.86376 0.85936 0.86187 0.92326 0.86429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.16 18.54 42.15 0.78 -6.38 15 2 C 0.22 2.86 15.42 -20.76 -0.32 2.54 15 3 C 0.02 0.20 5.83 -30.67 -0.18 0.02 15 4 C -0.10 -1.43 5.09 -104.63 -0.53 -1.96 15 5 C -0.13 -1.83 9.70 -39.58 -0.38 -2.22 15 6 C -0.12 -1.85 10.05 -39.59 -0.40 -2.25 15 7 C -0.10 -1.84 9.30 -39.59 -0.37 -2.21 15 8 C -0.02 -0.32 4.94 -104.62 -0.52 -0.83 15 9 C 0.21 4.58 2.63 -70.02 -0.18 4.40 15 10 H 0.05 1.16 5.17 -51.92 -0.27 0.89 15 11 N -0.85 -17.43 9.01 -6.65 -0.06 -17.49 15 12 C -0.54 -14.20 9.11 -34.44 -0.31 -14.51 15 13 H 0.08 2.17 8.06 -52.49 -0.42 1.75 15 14 C 0.08 2.11 5.47 -17.82 -0.10 2.01 15 15 N -0.89 -25.69 13.96 55.43 0.77 -24.91 15 16 Si 0.87 20.16 26.99 -169.99 -4.59 15.57 15 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 19 H -0.26 -5.80 6.82 56.52 0.39 -5.42 15 20 C -0.11 -1.95 9.33 -39.58 -0.37 -2.32 15 21 H 0.12 0.98 8.09 -51.93 -0.42 0.56 15 22 H 0.11 0.81 8.08 -51.93 -0.42 0.39 15 23 H 0.11 1.24 8.06 -52.49 -0.42 0.82 15 24 H 0.11 1.43 8.06 -52.48 -0.42 1.01 15 25 H 0.12 2.06 6.71 -52.49 -0.35 1.70 15 26 H 0.33 6.71 9.07 -39.29 -0.36 6.36 15 27 H 0.33 6.29 7.42 -39.29 -0.29 5.99 15 28 H 0.27 7.25 8.31 -40.82 -0.34 6.91 15 29 H 0.12 1.97 8.04 -52.49 -0.42 1.55 15 LS Contribution 261.44 15.07 3.94 3.94 Total: -1.00 -30.40 261.44 -5.76 -36.17 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -2.95 Total: 10.44 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -3.66 Total: -17.34 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 1.49 Total: -48.78 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.59 Total: 15.57 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.40 -5.76 -36.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104502227.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.728 kcal (2) G-P(sol) polarization free energy of solvation -30.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds