Wall clock time and date at job start Mon Mar 30 2020 03:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.50701 * 109.47383 * 358.87289 * 3 2 1 5 5 C 1.38250 * 120.00097 * 90.00178 * 4 3 2 6 6 C 1.38217 * 120.00216 * 180.02562 * 5 4 3 7 7 C 1.38250 * 120.00016 * 359.97438 * 6 5 4 8 8 C 1.38220 * 119.99897 * 359.95889 * 7 6 5 9 9 C 1.50694 * 119.99680 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47239 * 199.99580 * 9 8 7 11 11 N 1.46896 * 109.47596 * 319.99749 * 9 8 7 12 12 C 1.50707 * 109.47137 * 80.00103 * 9 8 7 13 13 H 1.07996 * 119.99873 * 354.48568 * 12 9 8 14 14 C 1.37880 * 120.00020 * 174.49052 * 12 9 8 15 15 N 1.31513 * 119.99928 * 163.25794 * 14 12 9 16 16 Si 1.86802 * 119.99861 * 343.25766 * 14 12 9 17 17 H 1.48492 * 109.47254 * 269.99958 * 16 14 12 18 18 H 1.48501 * 109.46960 * 30.00439 * 16 14 12 19 19 H 1.48500 * 109.47005 * 150.00237 * 16 14 12 20 20 C 1.38213 * 120.00011 * 270.21007 * 4 3 2 21 21 H 1.09008 * 109.46894 * 238.87292 * 3 2 1 22 22 H 1.08992 * 109.47219 * 118.87682 * 3 2 1 23 23 H 1.08000 * 120.00009 * 0.02562 * 5 4 3 24 24 H 1.07999 * 119.99830 * 179.97438 * 6 5 4 25 25 H 1.07995 * 120.00201 * 179.97438 * 7 6 5 26 26 H 1.00894 * 111.00269 * 65.65983 * 11 9 8 27 27 H 1.00899 * 111.00599 * 189.61966 * 11 9 8 28 28 H 0.96996 * 120.00129 * 358.55570 * 15 14 12 29 29 H 1.08001 * 120.00381 * 0.02562 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1110 -1.4196 0.0279 5 6 3.3418 -2.0947 -1.1563 6 6 3.8026 -3.3975 -1.1307 7 6 4.0333 -4.0255 0.0792 8 6 3.8039 -3.3501 1.2632 9 6 4.0559 -4.0345 2.5819 10 1 3.5071 -3.5186 3.3697 11 7 3.6042 -5.4301 2.5036 12 6 5.5304 -4.0003 2.8919 13 1 6.2263 -3.6105 2.1638 14 6 5.9908 -4.4668 4.1049 15 7 7.2662 -4.7477 4.2602 16 14 4.8031 -4.6997 5.5278 17 1 4.7276 -3.4460 6.3199 18 1 3.4561 -5.0329 4.9987 19 1 5.2814 -5.8055 6.3959 20 6 3.3375 -2.0489 1.2375 21 1 2.9710 0.5321 0.8798 22 1 2.9710 0.4971 -0.8998 23 1 3.1620 -1.6040 -2.1014 24 1 3.9825 -3.9249 -2.0558 25 1 4.3930 -5.0436 0.0992 26 1 4.1607 -5.9539 1.8450 27 1 3.6159 -5.8656 3.4137 28 1 7.8792 -4.6468 3.5154 29 1 3.1536 -1.5229 2.1627 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104502231.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:10 Heat of formation + Delta-G solvation = 20.451711 kcal Electronic energy + Delta-G solvation = -13480.000467 eV Core-core repulsion = 11173.594168 eV Total energy + Delta-G solvation = -2306.406299 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.41928 -37.75752 -36.66272 -34.16471 -33.28114 -31.38549 -28.51427 -27.73909 -24.36675 -23.01921 -21.12243 -19.79125 -18.46885 -17.65472 -16.85768 -16.14406 -15.73960 -15.54779 -15.08547 -14.77507 -14.48010 -14.33267 -13.96970 -13.85474 -13.26652 -13.05674 -12.93940 -12.53028 -12.33219 -11.89783 -11.77313 -11.54242 -11.35493 -10.62106 -9.68510 -9.55416 -9.41421 -8.63656 -6.46664 0.50129 0.67402 1.46261 1.48799 1.67478 1.83835 1.86461 2.42147 2.88814 3.00308 3.39716 3.90108 4.01869 4.14292 4.32868 4.47896 4.55670 4.68512 4.78749 4.83959 4.99443 5.25997 5.32837 5.67550 5.69630 5.71866 5.95719 6.00901 6.24525 6.42151 6.56307 6.65032 6.81431 7.33198 8.55895 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.034778 B = 0.008003 C = 0.007337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.908047 B = 3497.656242 C = 3815.233005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C 0.240 3.760 3 C 0.026 3.974 4 C -0.093 4.093 5 C -0.122 4.122 6 C -0.126 4.126 7 C -0.123 4.123 8 C -0.056 4.056 9 C 0.213 3.787 10 H 0.040 0.960 11 N -0.846 5.846 12 C -0.619 4.619 13 H 0.017 0.983 14 C -0.016 4.016 15 N -0.931 5.931 16 Si 1.086 2.914 17 H -0.273 1.273 18 H -0.242 1.242 19 H -0.285 1.285 20 C -0.129 4.129 21 H 0.141 0.859 22 H 0.160 0.840 23 H 0.157 0.843 24 H 0.141 0.859 25 H 0.105 0.895 26 H 0.329 0.671 27 H 0.328 0.672 28 H 0.254 0.746 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.637 6.910 -8.785 12.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.179 5.179 2 C -0.076 4.076 3 C -0.013 4.013 4 C -0.094 4.094 5 C -0.140 4.140 6 C -0.144 4.144 7 C -0.142 4.142 8 C -0.056 4.056 9 C 0.103 3.897 10 H 0.058 0.942 11 N -0.376 5.376 12 C -0.659 4.659 13 H 0.036 0.964 14 C -0.215 4.215 15 N -0.566 5.566 16 Si 0.907 3.093 17 H -0.199 1.199 18 H -0.166 1.166 19 H -0.211 1.211 20 C -0.147 4.147 21 H 0.159 0.841 22 H 0.177 0.823 23 H 0.174 0.826 24 H 0.159 0.841 25 H 0.124 0.876 26 H 0.141 0.859 27 H 0.141 0.859 28 H 0.063 0.937 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.136 6.769 -7.467 13.603 hybrid contribution 2.243 -0.143 -1.024 2.470 sum -6.893 6.626 -8.491 12.787 Atomic orbital electron populations 1.81221 1.14926 1.10470 1.11292 1.29626 0.95511 0.91252 0.91198 1.18438 0.79248 0.93997 1.09603 1.19554 1.01311 0.95781 0.92794 1.21306 0.99822 0.94474 0.98425 1.21368 0.99639 0.95931 0.97447 1.21033 1.00473 0.99891 0.92766 1.20068 0.95372 0.94739 0.95447 1.18207 0.92230 0.87524 0.91719 0.94226 1.59691 1.60102 1.04316 1.13442 1.22715 0.93619 1.46254 1.03288 0.96439 1.27208 0.99399 0.92224 1.02698 1.70946 1.05157 1.45051 1.35433 0.83496 0.74767 0.77872 0.73148 1.19854 1.16634 1.21142 1.21102 1.00608 0.94434 0.98571 0.84086 0.82279 0.82565 0.84118 0.87643 0.85890 0.85877 0.93696 0.85904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -14.90 18.54 20.00 0.37 -14.53 15 2 C 0.24 5.45 15.41 89.44 1.38 6.83 15 3 C 0.03 0.40 5.83 28.04 0.16 0.56 15 4 C -0.09 -2.30 5.09 -19.87 -0.10 -2.40 15 5 C -0.12 -2.89 9.70 22.27 0.22 -2.68 15 6 C -0.13 -3.57 10.05 22.27 0.22 -3.35 15 7 C -0.12 -4.50 9.31 22.27 0.21 -4.29 15 8 C -0.06 -2.23 4.90 -19.87 -0.10 -2.33 15 9 C 0.21 9.72 2.41 43.42 0.10 9.83 15 10 H 0.04 1.81 6.58 -2.39 -0.02 1.80 15 11 N -0.85 -35.83 8.93 -174.96 -1.56 -37.39 15 12 C -0.62 -33.52 8.94 25.60 0.23 -33.29 15 13 H 0.02 1.05 7.99 -2.91 -0.02 1.03 15 14 C -0.02 -0.86 5.43 84.66 0.46 -0.40 15 15 N -0.93 -56.19 13.70 21.45 0.29 -55.90 15 16 Si 1.09 47.47 26.56 68.60 1.82 49.29 15 17 H -0.27 -11.46 7.11 99.48 0.71 -10.75 15 18 H -0.24 -9.42 5.50 99.48 0.55 -8.87 15 19 H -0.29 -12.53 7.11 99.48 0.71 -11.83 15 20 C -0.13 -4.29 9.33 22.27 0.21 -4.08 15 21 H 0.14 1.58 8.09 -2.38 -0.02 1.56 15 22 H 0.16 1.11 8.08 -2.39 -0.02 1.09 15 23 H 0.16 2.42 8.06 -2.91 -0.02 2.39 15 24 H 0.14 3.16 8.06 -2.91 -0.02 3.14 15 25 H 0.11 3.96 6.79 -2.91 -0.02 3.94 15 26 H 0.33 13.73 7.54 -89.70 -0.68 13.06 15 27 H 0.33 13.60 5.83 -89.69 -0.52 13.08 15 28 H 0.25 15.65 8.72 -92.71 -0.81 14.84 15 29 H 0.12 3.86 8.03 -2.91 -0.02 3.83 15 Total: -1.00 -69.53 257.61 3.70 -65.83 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: -0.21 Total: 28.30 kcal Atomic # 6 Polarization: -38.60 SS G_CDS: 2.99 Total: -35.61 kcal Atomic # 7 Polarization: -106.92 SS G_CDS: -0.90 Total: -107.82 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.82 Total: 49.29 kcal Total: -69.53 3.70 -65.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104502231.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.280 kcal (2) G-P(sol) polarization free energy of solvation -69.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds