Wall clock time and date at job start Mon Mar 30 2020 02:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 H 1.09001 * 109.56712 * 300.25318 * 9 7 2 11 11 C 1.53098 * 109.57788 * 179.97438 * 9 7 2 12 12 C 1.52578 * 109.95419 * 177.16401 * 11 9 7 13 13 H 1.08997 * 109.22903 * 310.34922 * 12 11 9 14 14 C 1.53002 * 109.22569 * 190.99389 * 12 11 9 15 15 C 1.52999 * 109.47458 * 174.99942 * 14 12 11 16 16 O 1.42895 * 109.47146 * 179.97438 * 15 14 12 17 17 C 1.52582 * 110.72762 * 70.67398 * 12 11 9 18 18 C 1.53092 * 109.95572 * 289.32536 * 17 12 11 19 19 S 1.81744 * 109.57782 * 60.63705 * 9 7 2 20 20 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.38718 * 297.31257 * 11 9 7 22 22 H 1.09003 * 109.38683 * 57.11173 * 11 9 7 23 23 H 1.09006 * 109.47169 * 295.00536 * 14 12 11 24 24 H 1.09004 * 109.47226 * 54.99784 * 14 12 11 25 25 H 1.09004 * 109.46908 * 300.00392 * 15 14 12 26 26 H 1.08999 * 109.46562 * 59.99702 * 15 14 12 27 27 H 0.96698 * 113.99619 * 179.97438 * 16 15 14 28 28 H 1.09003 * 109.38727 * 49.47473 * 17 12 11 29 29 H 1.09000 * 109.39002 * 169.26985 * 17 12 11 30 30 H 1.08999 * 109.57352 * 182.83141 * 18 17 12 31 31 H 1.08998 * 109.57577 * 303.08383 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 1 0.6240 -2.5588 0.8838 11 6 2.2438 -3.6647 -0.0134 12 6 1.4913 -4.9901 0.0574 13 1 0.7684 -4.9494 0.8720 14 6 2.4867 -6.1209 0.3245 15 6 1.7264 -7.4341 0.5205 16 8 2.6561 -8.4902 0.7694 17 6 0.7579 -5.2653 -1.2520 18 6 -0.4233 -4.3029 -1.4015 19 16 0.2133 -2.6032 -1.4943 20 1 -0.4850 -0.8400 0.0004 21 1 2.8334 -3.6317 -0.9295 22 1 2.9073 -3.5804 0.8473 23 1 3.1644 -6.2165 -0.5239 24 1 3.0601 -5.8954 1.2237 25 1 1.0488 -7.3384 1.3690 26 1 1.1531 -7.6595 -0.3787 27 1 2.2431 -9.3542 0.9039 28 1 1.4447 -5.1279 -2.0872 29 1 0.3893 -6.2911 -1.2516 30 1 -0.9723 -4.5375 -2.3135 31 1 -1.0854 -4.4009 -0.5413 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107929869.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:09 Heat of formation + Delta-G solvation = -86.818442 kcal Electronic energy + Delta-G solvation = -12907.621551 eV Core-core repulsion = 10699.714869 eV Total energy + Delta-G solvation = -2207.906682 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.99183 -36.20820 -33.67496 -30.69793 -30.25532 -26.10264 -23.78333 -22.55645 -21.10234 -19.72732 -17.49203 -16.94936 -15.71225 -15.25272 -14.27264 -13.80816 -13.76999 -13.36182 -13.25132 -13.07834 -12.58511 -11.90029 -11.55861 -11.43830 -10.93498 -10.90519 -10.63906 -10.29953 -10.17619 -10.09900 -9.98541 -9.76478 -8.84543 -8.50396 -8.36739 -6.80509 -6.10020 -4.23931 3.01967 3.38899 3.45202 3.58378 4.05443 4.18261 4.43279 4.97094 5.09591 5.24024 5.30210 5.38530 5.50371 5.64626 5.80393 5.84350 5.98363 6.14973 6.17465 6.30115 6.35752 6.43152 6.58761 6.69252 6.85115 7.19197 7.54297 7.89234 8.22992 8.69578 9.42879 10.87070 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.047328 B = 0.007984 C = 0.007108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.478699 B = 3505.986387 C = 3938.209568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.025 3.975 3 Si 1.073 2.927 4 H -0.285 1.285 5 H -0.286 1.286 6 H -0.281 1.281 7 C -0.563 4.563 8 H 0.063 0.937 9 C 0.098 3.902 10 H 0.032 0.968 11 C -0.095 4.095 12 C -0.091 4.091 13 H 0.064 0.936 14 C -0.111 4.111 15 C 0.073 3.927 16 O -0.577 6.577 17 C -0.109 4.109 18 C -0.096 4.096 19 S -0.346 6.346 20 H 0.291 0.709 21 H 0.063 0.937 22 H 0.060 0.940 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.043 0.957 26 H 0.048 0.952 27 H 0.375 0.625 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.607 -11.719 0.686 11.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.187 4.187 3 Si 0.900 3.100 4 H -0.212 1.212 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.608 4.608 8 H 0.082 0.918 9 C -0.026 4.026 10 H 0.050 0.950 11 C -0.134 4.134 12 C -0.110 4.110 13 H 0.082 0.918 14 C -0.149 4.149 15 C -0.005 4.005 16 O -0.382 6.382 17 C -0.148 4.148 18 C -0.245 4.245 19 S -0.115 6.115 20 H 0.105 0.895 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.221 0.779 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.533 -8.886 -0.200 9.019 hybrid contribution -0.192 -3.064 0.864 3.190 sum 1.341 -11.950 0.665 12.043 Atomic orbital electron populations 1.70627 1.06968 1.33130 1.39539 1.26028 0.96553 1.03024 0.93114 0.83486 0.74851 0.74753 0.76929 1.21170 1.21137 1.20687 1.21893 0.94522 0.90161 1.54202 0.91840 1.20982 0.94248 0.96617 0.90733 0.95031 1.21683 0.98034 0.91947 1.01737 1.21127 0.97085 0.95257 0.97540 0.91755 1.21560 0.98507 0.92185 1.02651 1.22365 0.91402 0.87729 0.98981 1.86488 1.37172 1.19751 1.94827 1.21774 0.97128 0.97806 0.98121 1.23231 0.99295 0.98579 1.03348 1.87853 1.65099 1.13263 1.45331 0.89457 0.91853 0.92145 0.91344 0.91313 0.93877 0.93406 0.77911 0.91281 0.92573 0.90178 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.82 13.29 55.43 0.74 -25.08 16 2 C 0.03 0.71 5.29 -17.82 -0.09 0.62 16 3 Si 1.07 24.57 29.90 -169.99 -5.08 19.49 16 4 H -0.29 -6.23 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.56 -15.45 8.56 -34.44 -0.29 -15.74 16 8 H 0.06 1.71 7.75 -52.49 -0.41 1.31 16 9 C 0.10 2.43 2.11 -27.83 -0.06 2.37 16 10 H 0.03 0.84 8.01 -51.93 -0.42 0.43 16 11 C -0.09 -1.95 4.28 -26.90 -0.12 -2.06 16 12 C -0.09 -1.55 1.94 -91.05 -0.18 -1.72 16 13 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 14 C -0.11 -1.64 5.02 -26.73 -0.13 -1.77 16 15 C 0.07 0.90 6.79 37.16 0.25 1.15 16 16 O -0.58 -7.05 13.66 -35.23 -0.48 -7.53 16 17 C -0.11 -1.79 4.98 -26.90 -0.13 -1.93 16 18 C -0.10 -1.81 6.46 37.21 0.24 -1.57 16 19 S -0.35 -8.47 19.45 -107.50 -2.09 -10.56 16 20 H 0.29 8.69 5.83 -40.82 -0.24 8.45 16 21 H 0.06 1.34 8.06 -51.93 -0.42 0.92 16 22 H 0.06 1.21 8.05 -51.93 -0.42 0.79 16 23 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 25 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.55 6.29 -51.93 -0.33 0.22 16 27 H 0.37 2.67 9.12 45.56 0.42 3.09 16 28 H 0.07 1.18 8.06 -51.93 -0.42 0.76 16 29 H 0.06 0.77 6.03 -51.93 -0.31 0.46 16 30 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 258.96 15.07 3.90 3.90 Total: -1.00 -30.69 258.96 -7.40 -38.08 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -3.86 Total: 2.34 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: -0.51 Total: -20.65 kcal Atomic # 7 Polarization: -25.82 SS G_CDS: 0.74 Total: -25.08 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.48 Total: -7.53 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -5.08 Total: 19.49 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -2.09 Total: -10.56 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.69 -7.40 -38.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107929869.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.734 kcal (2) G-P(sol) polarization free energy of solvation -30.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds