Wall clock time and date at job start Mon Mar 30 2020 02:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 H 1.09001 * 109.56712 * 300.25318 * 9 7 2 11 11 C 1.53098 * 109.57788 * 179.97438 * 9 7 2 12 12 C 1.52578 * 109.95419 * 177.16401 * 11 9 7 13 13 H 1.08997 * 109.22903 * 310.34922 * 12 11 9 14 14 C 1.53002 * 109.22569 * 190.99389 * 12 11 9 15 15 C 1.52999 * 109.47458 * 174.99942 * 14 12 11 16 16 O 1.42895 * 109.47146 * 179.97438 * 15 14 12 17 17 C 1.52582 * 110.72762 * 70.67398 * 12 11 9 18 18 C 1.53092 * 109.95572 * 289.32536 * 17 12 11 19 19 S 1.81744 * 109.57782 * 60.63705 * 9 7 2 20 20 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.38718 * 297.31257 * 11 9 7 22 22 H 1.09003 * 109.38683 * 57.11173 * 11 9 7 23 23 H 1.09006 * 109.47169 * 295.00536 * 14 12 11 24 24 H 1.09004 * 109.47226 * 54.99784 * 14 12 11 25 25 H 1.09004 * 109.46908 * 300.00392 * 15 14 12 26 26 H 1.08999 * 109.46562 * 59.99702 * 15 14 12 27 27 H 0.96698 * 113.99619 * 179.97438 * 16 15 14 28 28 H 1.09003 * 109.38727 * 49.47473 * 17 12 11 29 29 H 1.09000 * 109.39002 * 169.26985 * 17 12 11 30 30 H 1.08999 * 109.57352 * 182.83141 * 18 17 12 31 31 H 1.08998 * 109.57577 * 303.08383 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 1 0.6240 -2.5588 0.8838 11 6 2.2438 -3.6647 -0.0134 12 6 1.4913 -4.9901 0.0574 13 1 0.7684 -4.9494 0.8720 14 6 2.4867 -6.1209 0.3245 15 6 1.7264 -7.4341 0.5205 16 8 2.6561 -8.4902 0.7694 17 6 0.7579 -5.2653 -1.2520 18 6 -0.4233 -4.3029 -1.4015 19 16 0.2133 -2.6032 -1.4943 20 1 -0.4850 -0.8400 0.0004 21 1 2.8334 -3.6317 -0.9295 22 1 2.9073 -3.5804 0.8473 23 1 3.1644 -6.2165 -0.5239 24 1 3.0601 -5.8954 1.2237 25 1 1.0488 -7.3384 1.3690 26 1 1.1531 -7.6595 -0.3787 27 1 2.2431 -9.3542 0.9039 28 1 1.4447 -5.1279 -2.0872 29 1 0.3893 -6.2911 -1.2516 30 1 -0.9723 -4.5375 -2.3135 31 1 -1.0854 -4.4009 -0.5413 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107929869.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:09 Heat of formation + Delta-G solvation = -107.542960 kcal Electronic energy + Delta-G solvation = -12908.520234 eV Core-core repulsion = 10699.714869 eV Total energy + Delta-G solvation = -2208.805364 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.26718 -37.34082 -35.63593 -32.06497 -31.95907 -27.71310 -25.54317 -23.94599 -22.72073 -21.12863 -19.14916 -18.24376 -17.42529 -16.32295 -15.81702 -15.65310 -15.25968 -14.95016 -14.85813 -14.51652 -14.20543 -13.60052 -12.96685 -12.73931 -12.59214 -12.46383 -12.11853 -11.99339 -11.78193 -11.61649 -11.52380 -10.86246 -10.79855 -10.47389 -10.24094 -8.91999 -8.12207 -6.43278 1.23167 1.52737 1.66056 1.79153 2.20013 2.53280 3.22699 3.26718 3.69972 3.85190 4.00217 4.15216 4.29340 4.39305 4.44465 4.51064 4.61200 4.66325 4.73084 4.91263 4.99124 5.04158 5.09145 5.19798 5.27051 5.44585 5.84114 6.05965 6.51087 6.90502 7.32794 8.69079 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.047328 B = 0.007984 C = 0.007108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.478699 B = 3505.986387 C = 3938.209568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.021 4.021 3 Si 1.118 2.882 4 H -0.267 1.267 5 H -0.271 1.271 6 H -0.284 1.284 7 C -0.589 4.589 8 H 0.060 0.940 9 C 0.102 3.898 10 H 0.005 0.995 11 C -0.088 4.088 12 C -0.083 4.083 13 H 0.062 0.938 14 C -0.106 4.106 15 C 0.077 3.923 16 O -0.595 6.595 17 C -0.104 4.104 18 C -0.078 4.078 19 S -0.405 6.405 20 H 0.278 0.722 21 H 0.054 0.946 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.398 0.602 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.873 -13.649 0.523 13.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.226 4.226 3 Si 0.939 3.061 4 H -0.192 1.192 5 H -0.196 1.196 6 H -0.210 1.210 7 C -0.632 4.632 8 H 0.078 0.922 9 C -0.022 4.022 10 H 0.023 0.977 11 C -0.127 4.127 12 C -0.102 4.102 13 H 0.080 0.920 14 C -0.144 4.144 15 C 0.000 4.000 16 O -0.404 6.404 17 C -0.142 4.142 18 C -0.226 4.226 19 S -0.176 6.176 20 H 0.091 0.909 21 H 0.073 0.927 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.247 0.753 28 H 0.082 0.918 29 H 0.117 0.883 30 H 0.121 0.879 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.817 -10.841 -0.343 10.998 hybrid contribution -0.317 -2.621 0.897 2.788 sum 1.500 -13.462 0.554 13.557 Atomic orbital electron populations 1.70733 1.07931 1.32395 1.42619 1.27396 0.96607 1.06582 0.92054 0.82929 0.74175 0.71055 0.77988 1.19239 1.19591 1.21005 1.22207 0.94634 0.91665 1.54666 0.92172 1.20829 0.94399 0.97675 0.89306 0.97694 1.21582 0.97254 0.92660 1.01224 1.20992 0.97214 0.93967 0.98010 0.91979 1.21435 0.97931 0.92805 1.02233 1.22244 0.90973 0.86596 1.00169 1.86423 1.37942 1.21093 1.94899 1.21749 0.95891 0.99231 0.97340 1.23334 1.00328 0.94088 1.04831 1.87801 1.65922 1.19416 1.44427 0.90864 0.92728 0.92149 0.91585 0.92003 0.92934 0.91806 0.75255 0.91775 0.88331 0.87908 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.16 13.29 21.45 0.29 -54.87 16 2 C -0.02 -1.17 5.29 84.65 0.45 -0.72 16 3 Si 1.12 50.00 29.90 68.60 2.05 52.05 16 4 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 5 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.59 -33.12 8.56 25.60 0.22 -32.90 16 8 H 0.06 3.32 7.75 -2.91 -0.02 3.29 16 9 C 0.10 5.20 2.11 29.88 0.06 5.26 16 10 H 0.01 0.28 8.01 -2.39 -0.02 0.26 16 11 C -0.09 -3.60 4.28 30.49 0.13 -3.47 16 12 C -0.08 -2.65 1.94 -11.07 -0.02 -2.67 16 13 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 14 C -0.11 -2.85 5.02 30.59 0.15 -2.70 16 15 C 0.08 1.62 6.79 71.98 0.49 2.11 16 16 O -0.59 -12.46 13.66 -148.98 -2.03 -14.49 16 17 C -0.10 -3.06 4.98 30.49 0.15 -2.91 16 18 C -0.08 -2.74 6.46 72.01 0.46 -2.27 16 19 S -0.40 -19.96 19.45 -56.49 -1.10 -21.06 16 20 H 0.28 17.26 5.83 -92.71 -0.54 16.72 16 21 H 0.05 2.31 8.06 -2.39 -0.02 2.29 16 22 H 0.06 2.43 8.05 -2.39 -0.02 2.41 16 23 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 24 H 0.06 1.74 8.09 -2.39 -0.02 1.72 16 25 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.06 1.14 6.29 -2.39 -0.02 1.12 16 27 H 0.40 4.18 9.12 -74.06 -0.68 3.51 16 28 H 0.06 2.01 8.06 -2.39 -0.02 1.99 16 29 H 0.10 2.18 6.03 -2.39 -0.01 2.17 16 30 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 31 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -67.80 258.96 1.96 -65.84 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.66 Total: 12.80 kcal Atomic # 6 Polarization: -42.37 SS G_CDS: 2.10 Total: -40.27 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.29 Total: -54.87 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: -2.03 Total: -14.49 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 2.05 Total: 52.05 kcal Atomic # 16 Polarization: -19.96 SS G_CDS: -1.10 Total: -21.06 kcal Total: -67.80 1.96 -65.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107929869.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.702 kcal (2) G-P(sol) polarization free energy of solvation -67.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds