Wall clock time and date at job start Mon Mar 30 2020 02:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00250 * 2 1 4 4 H 1.48505 * 109.47067 * 270.00475 * 3 2 1 5 5 H 1.48502 * 109.47187 * 30.00216 * 3 2 1 6 6 H 1.48499 * 109.47360 * 150.00607 * 3 2 1 7 7 C 1.37881 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00010 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99571 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.57238 * 59.75305 * 9 7 2 11 11 C 1.53102 * 109.57432 * 180.02562 * 9 7 2 12 12 C 1.52581 * 109.95878 * 182.83826 * 11 9 7 13 13 H 1.08999 * 109.22374 * 49.64044 * 12 11 9 14 14 C 1.52994 * 109.22930 * 169.00284 * 12 11 9 15 15 C 1.53003 * 109.47336 * 186.23534 * 14 12 11 16 16 O 1.42894 * 109.47102 * 180.02562 * 15 14 12 17 17 C 1.52580 * 110.72272 * 289.32467 * 12 11 9 18 18 C 1.53096 * 109.95688 * 70.67615 * 17 12 11 19 19 S 1.81744 * 109.58190 * 299.36107 * 9 7 2 20 20 H 0.96996 * 119.99742 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.39045 * 62.68583 * 11 9 7 22 22 H 1.09001 * 109.39046 * 302.98326 * 11 9 7 23 23 H 1.08999 * 109.46999 * 306.23809 * 14 12 11 24 24 H 1.09005 * 109.47132 * 66.23384 * 14 12 11 25 25 H 1.09002 * 109.46640 * 299.99772 * 15 14 12 26 26 H 1.08994 * 109.46745 * 59.99666 * 15 14 12 27 27 H 0.96696 * 113.99957 * 180.02562 * 16 15 14 28 28 H 1.08999 * 109.39287 * 310.52895 * 17 12 11 29 29 H 1.08999 * 109.39185 * 190.82341 * 17 12 11 30 30 H 1.08998 * 109.57729 * 56.78187 * 18 17 12 31 31 H 1.09010 * 109.57773 * 177.16828 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6200 -2.5565 -0.8875 11 6 2.2437 -3.6647 -0.0005 12 6 1.4909 -4.9900 -0.0715 13 1 0.7642 -4.9469 -0.8828 14 6 2.4850 -6.1200 -0.3463 15 6 1.7220 -7.4267 -0.5728 16 8 2.6506 -8.4823 -0.8288 17 6 0.7634 -5.2686 1.2404 18 6 -0.4171 -4.3066 1.3978 19 16 0.2199 -2.6071 1.4922 20 1 -0.4849 0.8400 0.0004 21 1 2.8375 -3.6343 0.9130 22 1 2.9045 -3.5772 -0.8630 23 1 3.0695 -5.8817 -1.2349 24 1 3.1525 -6.2325 0.5082 25 1 1.1377 -7.6649 0.3159 26 1 1.0546 -7.3142 -1.4272 27 1 2.2359 -9.3422 -0.9825 28 1 1.4538 -5.1334 2.0729 29 1 0.3963 -6.2949 1.2397 30 1 -1.0819 -4.4007 0.5391 31 1 -0.9621 -4.5436 2.3116 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107929878.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:14 Heat of formation + Delta-G solvation = -81.118664 kcal Electronic energy + Delta-G solvation = -12863.093489 eV Core-core repulsion = 10655.433968 eV Total energy + Delta-G solvation = -2207.659521 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.89084 -36.11517 -33.33875 -30.59857 -30.38933 -26.35118 -23.93852 -22.42763 -20.74750 -19.63949 -17.39867 -16.56779 -15.47505 -15.16127 -14.70363 -14.02027 -13.63749 -13.29794 -12.94702 -12.60539 -12.17056 -12.15359 -11.41967 -11.18034 -11.09066 -11.00416 -10.56487 -10.54536 -10.15763 -10.00806 -9.79427 -9.64705 -9.13511 -8.54873 -8.20356 -6.28836 -5.85350 -4.20244 3.14877 3.32296 3.35399 3.38243 4.23116 4.28437 4.37388 5.05843 5.17825 5.31978 5.34531 5.43001 5.58986 5.74261 5.93688 5.96754 6.09369 6.25284 6.29941 6.40589 6.47176 6.57922 6.72553 6.83810 6.98361 7.42851 7.59516 7.73594 8.08375 8.74714 9.37241 10.88016 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.047163 B = 0.007948 C = 0.007079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.543992 B = 3522.225764 C = 3954.389883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.069 3.931 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.498 4.498 8 H 0.068 0.932 9 C 0.114 3.886 10 H 0.039 0.961 11 C -0.102 4.102 12 C -0.091 4.091 13 H 0.065 0.935 14 C -0.112 4.112 15 C 0.072 3.928 16 O -0.578 6.578 17 C -0.109 4.109 18 C -0.105 4.105 19 S -0.303 6.303 20 H 0.265 0.735 21 H 0.061 0.939 22 H 0.059 0.941 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.048 0.952 26 H 0.043 0.957 27 H 0.374 0.626 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.107 -11.236 -0.602 11.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.542 4.542 8 H 0.087 0.913 9 C -0.011 4.011 10 H 0.057 0.943 11 C -0.141 4.141 12 C -0.109 4.109 13 H 0.083 0.917 14 C -0.149 4.149 15 C -0.005 4.005 16 O -0.383 6.383 17 C -0.148 4.148 18 C -0.253 4.253 19 S -0.072 6.072 20 H 0.075 0.925 21 H 0.080 0.920 22 H 0.077 0.923 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.220 0.780 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.092 -9.898 0.298 9.963 hybrid contribution 0.013 -0.441 -0.933 1.032 sum 1.105 -10.339 -0.635 10.418 Atomic orbital electron populations 1.70067 1.05930 1.26994 1.44330 1.25163 0.94994 0.99747 0.94200 0.86487 0.80035 0.82764 0.78263 1.20378 1.20911 1.19529 1.20897 0.93130 0.89110 1.51024 0.91336 1.20722 0.93655 0.95035 0.91703 0.94282 1.21821 0.98314 0.92443 1.01564 1.21115 0.97062 0.95175 0.97585 0.91693 1.21572 0.98541 0.92296 1.02506 1.22373 0.91430 0.87762 0.98929 1.86486 1.37164 1.20221 1.94418 1.21789 0.97281 0.97778 0.97992 1.23298 0.99285 0.99556 1.03158 1.87609 1.66086 1.11166 1.42374 0.92483 0.92009 0.92266 0.91364 0.91421 0.93435 0.93870 0.77975 0.91421 0.92889 0.91927 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.96 12.23 55.43 0.68 -23.28 16 2 C 0.07 1.88 5.28 -17.82 -0.09 1.79 16 3 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.50 -13.50 8.56 -34.44 -0.29 -13.79 16 8 H 0.07 1.81 7.75 -52.49 -0.41 1.40 16 9 C 0.11 2.84 2.44 -27.83 -0.07 2.77 16 10 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 11 C -0.10 -2.08 4.28 -26.89 -0.12 -2.20 16 12 C -0.09 -1.55 1.92 -91.05 -0.18 -1.72 16 13 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 14 C -0.11 -1.65 5.02 -26.73 -0.13 -1.78 16 15 C 0.07 0.91 6.82 37.16 0.25 1.16 16 16 O -0.58 -7.14 13.66 -35.23 -0.48 -7.63 16 17 C -0.11 -1.82 4.99 -26.90 -0.13 -1.95 16 18 C -0.10 -2.01 6.46 37.21 0.24 -1.76 16 19 S -0.30 -7.49 20.37 -107.50 -2.19 -9.68 16 20 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 21 H 0.06 1.29 8.06 -51.93 -0.42 0.87 16 22 H 0.06 1.17 8.03 -51.93 -0.42 0.75 16 23 H 0.07 1.03 8.06 -51.93 -0.42 0.61 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.05 0.55 6.33 -51.93 -0.33 0.23 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.37 2.73 9.12 45.56 0.42 3.14 16 28 H 0.07 1.16 8.06 -51.93 -0.42 0.75 16 29 H 0.05 0.74 6.08 -51.93 -0.32 0.43 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.08 1.37 8.14 -51.92 -0.42 0.94 16 LS Contribution 261.47 15.07 3.94 3.94 Total: -1.00 -29.88 261.47 -7.57 -37.45 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -3.98 Total: 0.81 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -0.52 Total: -17.49 kcal Atomic # 7 Polarization: -23.96 SS G_CDS: 0.68 Total: -23.28 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.48 Total: -7.63 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: -7.49 SS G_CDS: -2.19 Total: -9.68 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.88 -7.57 -37.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107929878.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.667 kcal (2) G-P(sol) polarization free energy of solvation -29.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds