Wall clock time and date at job start Mon Mar 30 2020 02:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86793 * 120.00345 * 2 1 4 4 H 1.48497 * 109.47444 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47131 * 300.00250 * 3 2 1 6 6 H 1.48507 * 109.47275 * 59.99784 * 3 2 1 7 7 C 1.39959 * 119.99336 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99528 * 198.05314 * 7 2 1 9 9 C 1.41157 * 120.00389 * 18.06267 * 7 2 1 10 10 C 1.41532 * 119.87734 * 204.97050 * 9 7 2 11 11 C 1.35310 * 120.73500 * 179.97438 * 10 9 7 12 12 C 1.41049 * 120.22792 * 0.02562 * 11 10 9 13 13 C 1.40416 * 120.87863 * 180.02562 * 12 11 10 14 14 F 1.35099 * 120.18287 * 359.97438 * 13 12 11 15 15 C 1.37637 * 119.62719 * 179.72381 * 13 12 11 16 16 C 1.39250 * 120.84953 * 0.50959 * 15 13 12 17 17 C 1.36136 * 120.95294 * 359.48290 * 16 15 13 18 18 C 1.40844 * 119.83901 * 0.25012 * 17 16 15 19 19 C 1.39968 * 120.95579 * 180.02562 * 18 17 16 20 20 H 0.96999 * 119.99344 * 0.02562 * 1 2 3 21 21 H 1.07994 * 119.62877 * 359.97438 * 10 9 7 22 22 H 1.07997 * 119.88217 * 180.02562 * 11 10 9 23 23 H 1.08004 * 119.57232 * 180.26590 * 15 13 12 24 24 H 1.08006 * 119.52036 * 179.75929 * 16 15 13 25 25 H 1.07997 * 120.08163 * 180.23485 * 17 16 15 26 26 H 1.08006 * 120.32743 * 359.96319 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0079 -1.2122 0.0005 8 1 3.0480 -1.2351 0.2904 9 6 1.3542 -2.4046 -0.3779 10 6 1.8283 -3.6502 0.0983 11 6 1.2147 -4.8039 -0.2530 12 6 0.0895 -4.7793 -1.1032 13 6 -0.5581 -5.9681 -1.4761 14 9 -0.1076 -7.1582 -1.0222 15 6 -1.6575 -5.9138 -2.3024 16 6 -2.1303 -4.6952 -2.7825 17 6 -1.5249 -3.5250 -2.4395 18 6 -0.4005 -3.5400 -1.5915 19 6 0.2396 -2.3509 -1.2235 20 1 -0.4849 0.8401 -0.0004 21 1 2.6894 -3.6802 0.7494 22 1 1.5878 -5.7467 0.1188 23 1 -2.1575 -6.8284 -2.5851 24 1 -2.9925 -4.6778 -3.4328 25 1 -1.9058 -2.5876 -2.8170 26 1 -0.1228 -1.4010 -1.5882 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108370341.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:57 Heat of formation + Delta-G solvation = -23.304511 kcal Electronic energy + Delta-G solvation = -13410.132021 eV Core-core repulsion = 10946.075253 eV Total energy + Delta-G solvation = -2464.056768 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.065 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.17797 -38.74370 -35.68073 -33.53839 -30.85195 -29.72431 -27.98878 -25.53378 -22.27650 -21.57882 -20.61746 -17.82989 -16.60346 -16.45438 -15.26017 -15.21040 -14.85662 -14.44299 -13.58374 -13.03229 -12.74669 -12.38867 -12.15069 -12.05958 -11.51298 -11.23989 -11.14342 -10.86590 -10.52918 -10.16151 -9.83224 -9.62022 -9.30380 -8.57979 -7.62676 -6.98807 -6.79741 -4.51755 1.57455 2.13901 2.87549 2.97582 3.02491 3.24607 3.77169 3.89747 4.64045 5.08535 5.51903 5.62101 5.68193 5.93311 6.15928 6.23824 6.41066 6.64828 6.83016 6.88482 6.93378 7.10706 7.21215 7.39858 7.46524 7.52049 7.82546 7.96758 8.04200 8.41633 8.63267 8.70158 9.95030 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.049381 B = 0.008519 C = 0.007418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.881936 B = 3286.172822 C = 3773.907212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.072 3.928 3 Si 0.912 3.088 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.443 4.443 8 H 0.083 0.917 9 C 0.105 3.895 10 C -0.154 4.154 11 C -0.100 4.100 12 C -0.166 4.166 13 C 0.127 3.873 14 F -0.153 7.153 15 C -0.228 4.228 16 C -0.099 4.099 17 C -0.143 4.143 18 C 0.014 3.986 19 C -0.206 4.206 20 H 0.285 0.715 21 H 0.103 0.897 22 H 0.103 0.897 23 H 0.112 0.888 24 H 0.110 0.890 25 H 0.114 0.886 26 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.673 -2.077 -2.192 3.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.148 4.148 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.471 4.471 8 H 0.101 0.899 9 C 0.103 3.897 10 C -0.173 4.173 11 C -0.118 4.118 12 C -0.168 4.168 13 C 0.108 3.892 14 F -0.131 7.131 15 C -0.248 4.248 16 C -0.118 4.118 17 C -0.162 4.162 18 C 0.013 3.987 19 C -0.226 4.226 20 H 0.096 0.904 21 H 0.121 0.879 22 H 0.121 0.879 23 H 0.130 0.870 24 H 0.128 0.872 25 H 0.132 0.868 26 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.850 -1.952 -2.140 3.018 hybrid contribution 0.305 0.496 0.169 0.607 sum -0.545 -1.455 -1.971 2.510 Atomic orbital electron populations 1.69840 1.07753 1.29722 1.32319 1.26006 0.94814 1.01706 0.92264 0.86197 0.81007 0.80451 0.78817 1.18176 1.19422 1.19766 1.19744 0.98305 0.91257 1.37753 0.89856 1.17648 0.91644 0.91726 0.88726 1.21015 1.01342 0.92888 1.02068 1.20463 0.95596 0.97606 0.98167 1.17653 1.00705 0.91473 1.06959 1.17754 0.94980 0.79585 0.96855 1.91369 1.88933 1.45044 1.87791 1.20461 0.99954 0.98559 1.05788 1.20255 0.99502 0.91905 1.00090 1.20934 0.97090 0.97416 1.00722 1.17805 0.93858 0.92438 0.94583 1.21243 1.01585 0.95514 1.04259 0.90414 0.87931 0.87903 0.86992 0.87174 0.86822 0.85638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.96 10.98 55.55 0.61 -18.35 15 2 C 0.07 1.71 5.11 -17.34 -0.09 1.62 15 3 Si 0.91 17.48 29.60 -169.99 -5.03 12.45 15 4 H -0.26 -4.90 7.11 56.52 0.40 -4.50 15 5 H -0.27 -5.10 7.11 56.52 0.40 -4.70 15 6 H -0.27 -5.15 7.11 56.52 0.40 -4.75 15 7 C -0.44 -11.02 9.02 -37.83 -0.34 -11.36 15 8 H 0.08 1.96 7.91 -52.49 -0.42 1.55 15 9 C 0.11 2.69 5.57 -106.87 -0.60 2.10 15 10 C -0.15 -3.61 9.66 -39.37 -0.38 -3.99 15 11 C -0.10 -2.26 9.55 -39.56 -0.38 -2.64 15 12 C -0.17 -3.89 5.76 -106.60 -0.61 -4.51 15 13 C 0.13 2.73 7.28 -38.98 -0.28 2.44 15 14 F -0.15 -3.11 16.61 2.25 0.04 -3.07 15 15 C -0.23 -4.40 9.99 -39.42 -0.39 -4.79 15 16 C -0.10 -1.86 9.95 -39.96 -0.40 -2.25 15 17 C -0.14 -2.99 9.76 -39.35 -0.38 -3.38 15 18 C 0.01 0.33 5.74 -106.85 -0.61 -0.29 15 19 C -0.21 -5.24 8.43 -38.27 -0.32 -5.57 15 20 H 0.28 6.28 8.30 -40.82 -0.34 5.94 15 21 H 0.10 2.16 8.06 -52.49 -0.42 1.74 15 22 H 0.10 2.08 7.68 -52.49 -0.40 1.68 15 23 H 0.11 1.86 8.06 -52.48 -0.42 1.43 15 24 H 0.11 1.68 8.06 -52.48 -0.42 1.25 15 25 H 0.11 2.18 8.06 -52.49 -0.42 1.75 15 26 H 0.13 3.26 6.17 -52.48 -0.32 2.94 15 LS Contribution 236.61 15.07 3.57 3.57 Total: -1.00 -26.11 236.61 -7.58 -33.68 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -1.97 Total: 4.34 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: -4.79 Total: -32.62 kcal Atomic # 7 Polarization: -18.96 SS G_CDS: 0.61 Total: -18.35 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.04 Total: -3.07 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -5.03 Total: 12.45 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -26.11 -7.58 -33.68 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108370341.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.379 kcal (2) G-P(sol) polarization free energy of solvation -26.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds