Wall clock time and date at job start Mon Mar 30 2020 02:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86793 * 120.00345 * 2 1 4 4 H 1.48497 * 109.47444 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47131 * 300.00250 * 3 2 1 6 6 H 1.48507 * 109.47275 * 59.99784 * 3 2 1 7 7 C 1.39959 * 119.99336 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99528 * 198.05314 * 7 2 1 9 9 C 1.41157 * 120.00389 * 18.06267 * 7 2 1 10 10 C 1.41532 * 119.87734 * 204.97050 * 9 7 2 11 11 C 1.35310 * 120.73500 * 179.97438 * 10 9 7 12 12 C 1.41049 * 120.22792 * 0.02562 * 11 10 9 13 13 C 1.40416 * 120.87863 * 180.02562 * 12 11 10 14 14 F 1.35099 * 120.18287 * 359.97438 * 13 12 11 15 15 C 1.37637 * 119.62719 * 179.72381 * 13 12 11 16 16 C 1.39250 * 120.84953 * 0.50959 * 15 13 12 17 17 C 1.36136 * 120.95294 * 359.48290 * 16 15 13 18 18 C 1.40844 * 119.83901 * 0.25012 * 17 16 15 19 19 C 1.39968 * 120.95579 * 180.02562 * 18 17 16 20 20 H 0.96999 * 119.99344 * 0.02562 * 1 2 3 21 21 H 1.07994 * 119.62877 * 359.97438 * 10 9 7 22 22 H 1.07997 * 119.88217 * 180.02562 * 11 10 9 23 23 H 1.08004 * 119.57232 * 180.26590 * 15 13 12 24 24 H 1.08006 * 119.52036 * 179.75929 * 16 15 13 25 25 H 1.07997 * 120.08163 * 180.23485 * 17 16 15 26 26 H 1.08006 * 120.32743 * 359.96319 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0079 -1.2122 0.0005 8 1 3.0480 -1.2351 0.2904 9 6 1.3542 -2.4046 -0.3779 10 6 1.8283 -3.6502 0.0983 11 6 1.2147 -4.8039 -0.2530 12 6 0.0895 -4.7793 -1.1032 13 6 -0.5581 -5.9681 -1.4761 14 9 -0.1076 -7.1582 -1.0222 15 6 -1.6575 -5.9138 -2.3024 16 6 -2.1303 -4.6952 -2.7825 17 6 -1.5249 -3.5250 -2.4395 18 6 -0.4005 -3.5400 -1.5915 19 6 0.2396 -2.3509 -1.2235 20 1 -0.4849 0.8401 -0.0004 21 1 2.6894 -3.6802 0.7494 22 1 1.5878 -5.7467 0.1188 23 1 -2.1575 -6.8284 -2.5851 24 1 -2.9925 -4.6778 -3.4328 25 1 -1.9058 -2.5876 -2.8170 26 1 -0.1228 -1.4010 -1.5882 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108370341.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:57 Heat of formation + Delta-G solvation = -35.180458 kcal Electronic energy + Delta-G solvation = -13410.647001 eV Core-core repulsion = 10946.075253 eV Total energy + Delta-G solvation = -2464.571747 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.065 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.79364 -40.46632 -37.39320 -35.29121 -32.58637 -31.46653 -29.69925 -27.31146 -23.98684 -23.30453 -22.36042 -19.58369 -18.30361 -18.15300 -16.94754 -16.86368 -16.48628 -16.09071 -15.22864 -14.74791 -14.45430 -14.07952 -13.84651 -13.73177 -13.16417 -12.86839 -12.74257 -12.56491 -12.09520 -11.84877 -11.58342 -11.34172 -11.04361 -10.32346 -9.38877 -8.74051 -8.53332 -6.38347 -0.12231 0.43579 1.30775 1.39778 1.50300 1.54984 2.16042 2.22330 2.89692 3.45244 3.68810 4.02914 4.12375 4.28553 4.50251 4.63340 4.73349 4.89866 5.11742 5.18568 5.21717 5.42608 5.51602 5.66955 5.71422 5.76415 6.02152 6.17257 6.30899 6.58647 6.80138 6.87390 8.23123 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.049381 B = 0.008519 C = 0.007418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.881936 B = 3286.172822 C = 3773.907212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.034 3.966 3 Si 0.986 3.014 4 H -0.255 1.255 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.477 4.477 8 H 0.086 0.914 9 C 0.077 3.923 10 C -0.170 4.170 11 C -0.102 4.102 12 C -0.188 4.188 13 C 0.110 3.890 14 F -0.148 7.148 15 C -0.210 4.210 16 C -0.083 4.083 17 C -0.160 4.160 18 C -0.006 4.006 19 C -0.232 4.232 20 H 0.292 0.708 21 H 0.117 0.883 22 H 0.124 0.876 23 H 0.150 0.850 24 H 0.157 0.843 25 H 0.125 0.875 26 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.529 -2.765 -3.034 4.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.183 4.183 3 Si 0.806 3.194 4 H -0.178 1.178 5 H -0.188 1.188 6 H -0.189 1.189 7 C -0.505 4.505 8 H 0.104 0.896 9 C 0.074 3.926 10 C -0.189 4.189 11 C -0.120 4.120 12 C -0.189 4.189 13 C 0.090 3.910 14 F -0.127 7.127 15 C -0.229 4.229 16 C -0.101 4.101 17 C -0.178 4.178 18 C -0.006 4.006 19 C -0.252 4.252 20 H 0.103 0.897 21 H 0.135 0.865 22 H 0.142 0.858 23 H 0.167 0.833 24 H 0.174 0.826 25 H 0.143 0.857 26 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.710 -2.662 -2.981 4.347 hybrid contribution 0.428 0.513 0.354 0.756 sum -1.282 -2.149 -2.627 3.628 Atomic orbital electron populations 1.69890 1.09244 1.31033 1.33087 1.26863 0.95499 1.04809 0.91172 0.85090 0.79505 0.75733 0.79036 1.17835 1.18847 1.18939 1.20004 0.98703 0.92251 1.39558 0.89599 1.18016 0.92298 0.92934 0.89331 1.21195 1.02216 0.92675 1.02799 1.20737 0.95354 0.98184 0.97737 1.17960 1.01294 0.92307 1.07372 1.17874 0.95939 0.79188 0.97953 1.91378 1.89020 1.44402 1.87855 1.20986 0.98315 1.00332 1.03246 1.20752 0.99776 0.90539 0.98986 1.21161 0.96668 0.99234 1.00759 1.18102 0.94933 0.92203 0.95369 1.21195 1.02721 0.95636 1.05627 0.89672 0.86463 0.85784 0.83274 0.82567 0.85750 0.87234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.90 10.98 21.83 0.24 -40.66 15 2 C 0.03 1.63 5.11 85.26 0.44 2.06 15 3 Si 0.99 36.23 29.60 68.60 2.03 38.26 15 4 H -0.26 -9.12 7.11 99.48 0.71 -8.41 15 5 H -0.26 -9.37 7.11 99.48 0.71 -8.66 15 6 H -0.26 -9.31 7.11 99.48 0.71 -8.60 15 7 C -0.48 -24.66 9.02 23.40 0.21 -24.45 15 8 H 0.09 4.19 7.91 -2.91 -0.02 4.17 15 9 C 0.08 4.09 5.57 -21.32 -0.12 3.97 15 10 C -0.17 -8.18 9.66 22.41 0.22 -7.97 15 11 C -0.10 -4.64 9.55 22.28 0.21 -4.43 15 12 C -0.19 -8.73 5.76 -21.14 -0.12 -8.85 15 13 C 0.11 4.45 7.28 22.66 0.17 4.61 15 14 F -0.15 -5.68 16.61 44.97 0.75 -4.93 15 15 C -0.21 -7.22 9.99 22.37 0.22 -7.00 15 16 C -0.08 -2.76 9.95 22.02 0.22 -2.55 15 17 C -0.16 -6.46 9.76 22.42 0.22 -6.25 15 18 C -0.01 -0.27 5.74 -21.31 -0.12 -0.39 15 19 C -0.23 -12.26 8.43 23.12 0.19 -12.07 15 20 H 0.29 13.22 8.30 -92.71 -0.77 12.45 15 21 H 0.12 5.07 8.06 -2.91 -0.02 5.05 15 22 H 0.12 4.95 7.68 -2.91 -0.02 4.92 15 23 H 0.15 4.07 8.06 -2.91 -0.02 4.04 15 24 H 0.16 3.83 8.06 -2.91 -0.02 3.80 15 25 H 0.12 4.66 8.06 -2.91 -0.02 4.63 15 26 H 0.11 6.00 6.17 -2.91 -0.02 5.98 15 Total: -1.00 -57.20 236.61 5.95 -51.26 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 1.19 Total: 19.38 kcal Atomic # 6 Polarization: -65.04 SS G_CDS: 1.74 Total: -63.30 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.24 Total: -40.66 kcal Atomic # 9 Polarization: -5.68 SS G_CDS: 0.75 Total: -4.93 kcal Atomic # 14 Polarization: 36.23 SS G_CDS: 2.03 Total: 38.26 kcal Total: -57.20 5.95 -51.26 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108370341.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.078 kcal (2) G-P(sol) polarization free energy of solvation -57.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds