Wall clock time and date at job start Mon Mar 30 2020 02:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86798 * 120.00233 * 2 1 4 4 H 1.48502 * 109.46854 * 275.40961 * 3 2 1 5 5 H 1.48501 * 109.47074 * 35.41262 * 3 2 1 6 6 H 1.48502 * 109.47294 * 155.41457 * 3 2 1 7 7 C 1.39949 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99592 * 341.69175 * 7 2 1 9 9 C 1.41129 * 119.99839 * 161.69131 * 7 2 1 10 10 C 1.41536 * 119.87354 * 149.98867 * 9 7 2 11 11 C 1.35290 * 120.74222 * 180.02562 * 10 9 7 12 12 C 1.41125 * 120.21285 * 0.02562 * 11 10 9 13 13 C 1.40156 * 120.89465 * 180.02562 * 12 11 10 14 14 C 1.36453 * 119.85121 * 179.97438 * 13 12 11 15 15 C 1.39173 * 121.06857 * 0.02562 * 14 13 12 16 16 C 1.36455 * 120.88623 * 359.97438 * 15 14 13 17 17 F 1.35094 * 120.21330 * 179.97438 * 16 15 14 18 18 C 1.41085 * 119.57302 * 0.02562 * 16 15 14 19 19 C 1.39853 * 121.03647 * 180.02562 * 18 16 15 20 20 H 0.97005 * 119.99753 * 359.97438 * 1 2 3 21 21 H 1.07999 * 119.63114 * 359.97438 * 10 9 7 22 22 H 1.08003 * 119.89376 * 180.02562 * 11 10 9 23 23 H 1.07995 * 120.07301 * 359.70394 * 13 12 11 24 24 H 1.07994 * 119.46679 * 179.97438 * 14 13 12 25 25 H 1.08005 * 119.55591 * 180.02562 * 15 14 13 26 26 H 1.08001 * 120.32205 * 359.95544 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3755 2.1123 -1.3939 5 1 1.5017 2.6169 0.8113 6 1 3.5925 1.4098 0.5825 7 6 2.0080 -1.2120 0.0005 8 1 1.5089 -2.1235 0.2948 9 6 3.3657 -1.2431 -0.3834 10 6 4.2342 -2.2112 0.1749 11 6 5.5389 -2.2567 -0.1801 12 6 6.0526 -1.3340 -1.1162 13 6 7.4017 -1.3684 -1.4947 14 6 7.8758 -0.4663 -2.4021 15 6 7.0402 0.4949 -2.9631 16 6 5.7209 0.5618 -2.6211 17 9 4.9221 1.5008 -3.1737 18 6 5.1966 -0.3552 -1.6859 19 6 3.8491 -0.3147 -1.3137 20 1 -0.4850 0.8401 0.0004 21 1 3.8513 -2.9212 0.8931 22 1 6.1893 -3.0015 0.2542 23 1 8.0654 -2.1045 -1.0659 24 1 8.9164 -0.4982 -2.6890 25 1 7.4412 1.1968 -3.6794 26 1 3.1877 0.4251 -1.7401 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108370348.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:59 Heat of formation + Delta-G solvation = -35.932237 kcal Electronic energy + Delta-G solvation = -13633.035672 eV Core-core repulsion = 11168.431325 eV Total energy + Delta-G solvation = -2464.604347 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.065 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.76086 -40.66661 -37.52868 -35.33699 -33.04394 -31.74569 -30.08884 -27.07911 -24.23858 -23.24389 -22.56849 -19.79739 -18.60948 -17.99536 -17.32239 -16.70489 -16.50973 -16.27206 -15.33405 -15.07240 -14.67036 -14.46115 -14.10476 -13.68964 -13.31790 -12.96557 -12.87640 -12.64627 -12.23789 -11.84968 -11.67404 -11.45509 -11.10298 -10.45044 -9.49118 -9.07303 -8.64240 -6.58777 -0.22875 0.28977 1.15966 1.20718 1.25465 1.39427 2.02783 2.03799 2.78463 3.47372 3.49100 3.93693 4.04385 4.33450 4.41568 4.46964 4.67793 4.71119 4.90512 5.03635 5.20395 5.30744 5.41345 5.48743 5.59070 5.79258 5.81439 6.03473 6.19975 6.24649 6.55418 6.70594 7.99193 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.034166 B = 0.012455 C = 0.009731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.321933 B = 2247.634593 C = 2876.797708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.058 3.942 3 Si 0.957 3.043 4 H -0.278 1.278 5 H -0.269 1.269 6 H -0.258 1.258 7 C -0.463 4.463 8 H 0.076 0.924 9 C 0.077 3.923 10 C -0.161 4.161 11 C -0.078 4.078 12 C -0.128 4.128 13 C -0.074 4.074 14 C -0.152 4.152 15 C -0.126 4.126 16 C 0.014 3.986 17 F -0.164 7.164 18 C -0.038 4.038 19 C -0.306 4.306 20 H 0.297 0.703 21 H 0.127 0.873 22 H 0.161 0.839 23 H 0.162 0.838 24 H 0.163 0.837 25 H 0.147 0.853 26 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.291 -0.659 -1.448 13.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.160 4.160 3 Si 0.782 3.218 4 H -0.205 1.205 5 H -0.195 1.195 6 H -0.182 1.182 7 C -0.491 4.491 8 H 0.094 0.906 9 C 0.075 3.925 10 C -0.179 4.179 11 C -0.096 4.096 12 C -0.129 4.129 13 C -0.092 4.092 14 C -0.170 4.170 15 C -0.144 4.144 16 C -0.005 4.005 17 F -0.143 7.143 18 C -0.039 4.039 19 C -0.326 4.326 20 H 0.108 0.892 21 H 0.145 0.855 22 H 0.178 0.822 23 H 0.179 0.821 24 H 0.181 0.819 25 H 0.165 0.835 26 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.940 -0.544 -1.432 13.031 hybrid contribution -0.957 1.082 -0.240 1.464 sum 11.983 0.538 -1.672 12.112 Atomic orbital electron populations 1.69693 1.08759 1.31748 1.35212 1.26672 0.95229 1.03687 0.90368 0.85565 0.79752 0.77773 0.78716 1.20452 1.19527 1.18184 1.19629 0.94373 0.95945 1.39166 0.90596 1.17888 0.93106 0.91867 0.89686 1.21276 0.94135 1.00785 1.01743 1.21146 0.95322 0.97506 0.95606 1.18064 0.94711 0.98165 1.01981 1.21345 0.92944 0.98726 0.96184 1.20792 1.00811 0.95932 0.99423 1.21010 0.90612 1.01227 1.01595 1.17944 0.90359 0.91684 1.00545 1.91354 1.74804 1.63691 1.84430 1.18160 0.94283 0.95497 0.95978 1.20791 0.95303 1.08293 1.08178 0.89185 0.85532 0.82198 0.82061 0.81916 0.83488 0.89694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.41 13.93 21.83 0.30 -45.10 15 2 C 0.06 3.16 5.39 85.26 0.46 3.62 15 3 Si 0.96 46.31 24.51 68.60 1.68 47.99 15 4 H -0.28 -13.88 6.71 99.48 0.67 -13.21 15 5 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 6 H -0.26 -12.88 6.87 99.48 0.68 -12.19 15 7 C -0.46 -25.64 9.54 23.39 0.22 -25.42 15 8 H 0.08 4.34 8.06 -2.91 -0.02 4.31 15 9 C 0.08 3.97 5.11 -21.32 -0.11 3.86 15 10 C -0.16 -6.84 9.66 22.40 0.22 -6.63 15 11 C -0.08 -2.79 9.71 22.30 0.22 -2.57 15 12 C -0.13 -4.91 5.75 -21.18 -0.12 -5.03 15 13 C -0.07 -2.11 9.74 22.32 0.22 -1.89 15 14 C -0.15 -4.00 9.95 22.08 0.22 -3.78 15 15 C -0.13 -4.04 9.93 22.08 0.22 -3.82 15 16 C 0.01 0.58 7.26 22.55 0.16 0.75 15 17 F -0.16 -7.45 16.64 44.97 0.75 -6.70 15 18 C -0.04 -1.78 5.74 -21.27 -0.12 -1.90 15 19 C -0.31 -15.93 6.75 23.10 0.16 -15.77 15 20 H 0.30 14.69 8.30 -92.70 -0.77 13.92 15 21 H 0.13 4.82 8.06 -2.91 -0.02 4.80 15 22 H 0.16 4.08 8.06 -2.91 -0.02 4.05 15 23 H 0.16 3.15 8.06 -2.91 -0.02 3.12 15 24 H 0.16 2.83 8.06 -2.91 -0.02 2.81 15 25 H 0.15 3.80 8.06 -2.91 -0.02 3.77 15 26 H 0.09 4.72 4.37 -2.91 -0.01 4.71 15 Total: -1.00 -63.06 231.32 5.61 -57.45 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: 1.14 Total: 4.94 kcal Atomic # 6 Polarization: -60.32 SS G_CDS: 1.74 Total: -58.58 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.30 Total: -45.10 kcal Atomic # 9 Polarization: -7.45 SS G_CDS: 0.75 Total: -6.70 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.68 Total: 47.99 kcal Total: -63.06 5.61 -57.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108370348.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.518 kcal (2) G-P(sol) polarization free energy of solvation -63.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds