Wall clock time and date at job start Mon Mar 30 2020 03:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48505 * 109.47183 * 239.99617 * 3 2 1 5 5 H 1.48496 * 109.47425 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47216 * 119.99610 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46866 * 179.97438 * 10 9 7 12 12 N 1.30250 * 126.10930 * 269.68899 * 11 10 9 13 13 N 1.39865 * 110.08627 * 179.90243 * 12 11 10 14 14 H 0.96999 * 125.46342 * 180.14108 * 13 12 11 15 15 C 1.37041 * 109.07939 * 0.36873 * 13 12 11 16 16 C 1.39283 * 133.84979 * 179.78280 * 15 13 12 17 17 C 1.36597 * 119.84711 * 180.02562 * 16 15 13 18 18 C 1.38966 * 120.81886 * 0.02562 * 17 16 15 19 19 C 1.36466 * 120.62424 * 359.97438 * 18 17 16 20 20 C 1.39938 * 119.63599 * 359.97438 * 19 18 17 21 21 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 23 23 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 24 24 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 25 25 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 26 26 H 1.07993 * 120.07970 * 0.03316 * 16 15 13 27 27 H 1.08004 * 119.58848 * 179.97438 * 17 16 15 28 28 H 1.07997 * 119.68668 * 179.97438 * 18 17 16 29 29 H 1.07995 * 120.17842 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4920 -4.9672 0.0012 12 7 1.1135 -5.6345 1.0538 13 7 0.4375 -6.7966 0.6683 14 1 0.0590 -7.4542 1.2726 15 6 0.4000 -6.8601 -0.7001 16 6 -0.1273 -7.7737 -1.6097 17 6 0.0017 -7.5493 -2.9509 18 6 0.6550 -6.4177 -3.4238 19 6 1.1815 -5.5054 -2.5562 20 6 1.0614 -5.7122 -1.1774 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6241 -2.5568 0.8903 24 1 2.8721 -3.6042 -0.8894 25 1 2.8721 -3.6043 0.8905 26 1 -0.6371 -8.6573 -1.2554 27 1 -0.4084 -8.2607 -3.6525 28 1 0.7469 -6.2587 -4.4881 29 1 1.6881 -4.6286 -2.9317 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117472358.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:37 Heat of formation + Delta-G solvation = 66.011960 kcal Electronic energy + Delta-G solvation = -13428.373308 eV Core-core repulsion = 11123.942649 eV Total energy + Delta-G solvation = -2304.430659 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.91215 -36.92693 -34.23895 -32.42814 -30.54047 -29.51134 -28.77719 -25.32838 -22.77661 -21.93197 -21.57932 -19.06961 -17.55466 -16.54271 -16.26940 -15.03303 -14.61369 -14.33724 -14.11684 -13.71287 -12.96199 -12.71391 -12.21635 -11.77721 -11.69513 -11.20719 -10.93491 -10.85199 -10.67724 -10.43082 -10.01066 -9.78705 -9.31725 -9.12172 -8.40988 -8.32687 -7.66616 -5.98204 -4.01687 1.21183 1.73923 2.89558 3.04142 3.35469 3.39858 3.42237 4.03282 4.47251 4.82548 4.94629 5.09022 5.15398 5.37555 5.44292 5.60332 5.89881 6.07731 6.10072 6.41840 6.51467 6.59271 6.71739 6.76448 6.98832 7.13566 7.59069 7.68178 7.78165 8.00728 8.06801 8.39231 9.04673 9.62173 11.13012 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.044730 B = 0.006592 C = 0.006143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.828518 B = 4246.534697 C = 4556.637180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.032 3.968 10 C -0.041 4.041 11 C 0.132 3.868 12 N -0.263 5.263 13 N -0.521 5.521 14 H 0.434 0.566 15 C 0.126 3.874 16 C -0.153 4.153 17 C -0.073 4.073 18 C -0.172 4.172 19 C -0.027 4.027 20 C -0.173 4.173 21 H 0.261 0.739 22 H 0.020 0.980 23 H 0.020 0.980 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.120 0.880 27 H 0.124 0.876 28 H 0.123 0.877 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.708 -14.138 -4.859 14.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.006 4.006 10 C -0.081 4.081 11 C -0.046 4.046 12 N -0.076 5.076 13 N -0.234 5.234 14 H 0.277 0.723 15 C 0.010 3.990 16 C -0.175 4.175 17 C -0.094 4.094 18 C -0.192 4.192 19 C -0.047 4.047 20 C -0.181 4.181 21 H 0.071 0.929 22 H 0.038 0.962 23 H 0.038 0.962 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.138 0.862 27 H 0.142 0.858 28 H 0.141 0.859 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.535 -14.069 -3.535 14.517 hybrid contribution 0.011 0.483 -0.460 0.667 sum 0.547 -13.587 -3.995 14.172 Atomic orbital electron populations 1.69969 1.06098 1.26766 1.50443 1.25013 0.94827 0.99254 0.95231 0.86631 0.79539 0.83022 0.78646 1.20172 1.21343 1.20202 1.21156 0.93064 0.90701 1.51142 0.92396 1.19054 0.93631 0.90090 0.97867 1.20437 0.97961 0.87314 1.02355 1.24239 0.96147 0.96377 0.87839 1.76644 1.12388 0.95324 1.23293 1.45935 1.52647 1.21686 1.03143 0.72267 1.18901 0.98233 0.96593 0.85293 1.19726 1.05911 0.99677 0.92170 1.20642 0.97248 0.97122 0.94338 1.20610 1.03093 0.95895 0.99614 1.20494 0.95613 0.98068 0.90517 1.19948 1.06956 0.96526 0.94637 0.92905 0.96188 0.96186 0.90659 0.90933 0.86231 0.85845 0.85875 0.85101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.05 13.29 55.43 0.74 -26.31 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 3 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 15 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 7 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 15 8 H 0.06 1.54 7.74 -52.48 -0.41 1.14 15 9 C 0.03 0.84 4.96 -27.88 -0.14 0.70 15 10 C -0.04 -0.88 5.75 -27.88 -0.16 -1.04 15 11 C 0.13 2.67 6.69 -80.19 -0.54 2.14 15 12 N -0.26 -5.22 12.55 34.84 0.44 -4.79 15 13 N -0.52 -8.44 7.37 32.36 0.24 -8.20 15 14 H 0.43 5.33 8.96 -182.78 -1.64 3.69 15 15 C 0.13 2.05 7.34 -84.18 -0.62 1.44 15 16 C -0.15 -1.98 10.03 -39.79 -0.40 -2.38 15 17 C -0.07 -0.87 9.96 -39.90 -0.40 -1.27 15 18 C -0.17 -2.25 9.97 -39.95 -0.40 -2.65 15 19 C -0.03 -0.42 10.07 -39.58 -0.40 -0.82 15 20 C -0.17 -3.15 6.33 -105.21 -0.67 -3.81 15 21 H 0.26 7.47 8.31 -40.82 -0.34 7.13 15 22 H 0.02 0.55 8.14 -51.93 -0.42 0.13 15 23 H 0.02 0.57 8.14 -51.93 -0.42 0.15 15 24 H 0.07 1.46 8.14 -51.93 -0.42 1.04 15 25 H 0.07 1.51 8.14 -51.93 -0.42 1.08 15 26 H 0.12 1.20 8.06 -52.49 -0.42 0.78 15 27 H 0.12 1.07 8.06 -52.48 -0.42 0.65 15 28 H 0.12 1.28 8.06 -52.49 -0.42 0.85 15 29 H 0.13 1.95 8.06 -52.49 -0.42 1.52 15 LS Contribution 259.52 15.07 3.91 3.91 Total: -1.00 -32.14 259.52 -8.38 -40.52 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -4.56 Total: -0.57 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -4.12 Total: -21.09 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 1.41 Total: -39.30 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.14 -8.38 -40.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117472358.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.531 kcal (2) G-P(sol) polarization free energy of solvation -32.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds