Wall clock time and date at job start Mon Mar 30 2020 03:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48505 * 109.47183 * 239.99617 * 3 2 1 5 5 H 1.48496 * 109.47425 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47216 * 119.99610 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46866 * 179.97438 * 10 9 7 12 12 N 1.30250 * 126.10930 * 269.68899 * 11 10 9 13 13 N 1.39865 * 110.08627 * 179.90243 * 12 11 10 14 14 H 0.96999 * 125.46342 * 180.14108 * 13 12 11 15 15 C 1.37041 * 109.07939 * 0.36873 * 13 12 11 16 16 C 1.39283 * 133.84979 * 179.78280 * 15 13 12 17 17 C 1.36597 * 119.84711 * 180.02562 * 16 15 13 18 18 C 1.38966 * 120.81886 * 0.02562 * 17 16 15 19 19 C 1.36466 * 120.62424 * 359.97438 * 18 17 16 20 20 C 1.39938 * 119.63599 * 359.97438 * 19 18 17 21 21 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 23 23 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 24 24 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 25 25 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 26 26 H 1.07993 * 120.07970 * 0.03316 * 16 15 13 27 27 H 1.08004 * 119.58848 * 179.97438 * 17 16 15 28 28 H 1.07997 * 119.68668 * 179.97438 * 18 17 16 29 29 H 1.07995 * 120.17842 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4920 -4.9672 0.0012 12 7 1.1135 -5.6345 1.0538 13 7 0.4375 -6.7966 0.6683 14 1 0.0590 -7.4542 1.2726 15 6 0.4000 -6.8601 -0.7001 16 6 -0.1273 -7.7737 -1.6097 17 6 0.0017 -7.5493 -2.9509 18 6 0.6550 -6.4177 -3.4238 19 6 1.1815 -5.5054 -2.5562 20 6 1.0614 -5.7122 -1.1774 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6241 -2.5568 0.8903 24 1 2.8721 -3.6042 -0.8894 25 1 2.8721 -3.6043 0.8905 26 1 -0.6371 -8.6573 -1.2554 27 1 -0.4084 -8.2607 -3.6525 28 1 0.7469 -6.2587 -4.4881 29 1 1.6881 -4.6286 -2.9317 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117472358.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:37 Heat of formation + Delta-G solvation = 45.737903 kcal Electronic energy + Delta-G solvation = -13429.252457 eV Core-core repulsion = 11123.942649 eV Total energy + Delta-G solvation = -2305.309808 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.18116 -38.08257 -36.10917 -34.23360 -32.07817 -30.76049 -30.15272 -27.30495 -23.97434 -23.56438 -23.03206 -20.58169 -18.81925 -18.42135 -17.72688 -16.53650 -16.09125 -15.79471 -15.44213 -14.88291 -14.73508 -14.39645 -14.04563 -13.25368 -12.84061 -12.80214 -12.75508 -12.53236 -12.11072 -11.94366 -11.81149 -11.51134 -11.25958 -10.84900 -10.54235 -9.61458 -8.87408 -8.17972 -6.30608 0.03739 0.61233 1.42961 1.47206 1.49603 1.55379 1.82753 2.43902 2.90454 3.15378 3.60036 3.66838 3.83637 4.19963 4.42476 4.54197 4.62091 4.67133 4.76585 4.92177 5.07497 5.13216 5.43405 5.48739 5.58260 5.63248 5.65905 5.81925 6.01773 6.20509 6.47124 6.68767 6.85265 7.38945 8.94082 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.044730 B = 0.006592 C = 0.006143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.828518 B = 4246.534697 C = 4556.637180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.542 4.542 8 H 0.070 0.930 9 C 0.043 3.957 10 C -0.027 4.027 11 C 0.104 3.896 12 N -0.290 5.290 13 N -0.511 5.511 14 H 0.449 0.551 15 C 0.113 3.887 16 C -0.149 4.149 17 C -0.063 4.063 18 C -0.161 4.161 19 C -0.056 4.056 20 C -0.206 4.206 21 H 0.263 0.737 22 H -0.006 1.006 23 H -0.018 1.018 24 H 0.090 0.910 25 H 0.072 0.928 26 H 0.155 0.845 27 H 0.169 0.831 28 H 0.154 0.846 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.990 -15.432 -6.396 16.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.580 4.580 8 H 0.088 0.912 9 C 0.005 3.995 10 C -0.066 4.066 11 C -0.073 4.073 12 N -0.105 5.105 13 N -0.227 5.227 14 H 0.296 0.704 15 C -0.004 4.004 16 C -0.170 4.170 17 C -0.084 4.084 18 C -0.180 4.180 19 C -0.076 4.076 20 C -0.214 4.214 21 H 0.072 0.928 22 H 0.012 0.988 23 H 0.000 1.000 24 H 0.109 0.891 25 H 0.090 0.910 26 H 0.173 0.827 27 H 0.186 0.814 28 H 0.172 0.828 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.828 -15.387 -5.072 16.223 hybrid contribution -0.160 0.748 -0.048 0.766 sum 0.668 -14.639 -5.121 15.523 Atomic orbital electron populations 1.70126 1.08061 1.27897 1.51501 1.26027 0.95717 1.03556 0.94531 0.85430 0.78163 0.77636 0.79388 1.18624 1.21091 1.19175 1.21618 0.93873 0.91608 1.50860 0.91169 1.18820 0.93829 0.92177 0.94669 1.20108 0.96885 0.86579 1.03023 1.24029 0.97428 0.96480 0.89390 1.76471 1.13152 0.96818 1.24054 1.45844 1.52057 1.20924 1.03880 0.70449 1.19309 0.98761 0.96996 0.85298 1.20229 1.04882 0.99832 0.92096 1.21206 0.95479 0.97023 0.94664 1.21057 1.01075 0.95126 1.00763 1.20672 0.97430 0.99356 0.90141 1.20175 1.08583 0.97447 0.95196 0.92785 0.98802 1.00007 0.89138 0.90972 0.82691 0.81353 0.82828 0.85518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.28 13.29 21.45 0.28 -57.99 15 2 C 0.00 -0.04 5.46 84.65 0.46 0.43 15 3 Si 0.97 44.42 29.54 68.60 2.03 46.44 15 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 15 5 H -0.29 -12.86 7.11 99.48 0.71 -12.15 15 6 H -0.27 -11.74 7.11 99.48 0.71 -11.04 15 7 C -0.54 -31.13 9.11 25.60 0.23 -30.89 15 8 H 0.07 3.76 7.74 -2.91 -0.02 3.74 15 9 C 0.04 2.40 4.96 29.85 0.15 2.55 15 10 C -0.03 -1.19 5.75 29.85 0.17 -1.01 15 11 C 0.10 4.39 6.69 44.79 0.30 4.69 15 12 N -0.29 -11.91 12.55 -43.69 -0.55 -12.46 15 13 N -0.51 -16.46 7.37 -51.54 -0.38 -16.84 15 14 H 0.45 10.70 8.96 -213.47 -1.91 8.79 15 15 C 0.11 3.54 7.34 39.21 0.29 3.83 15 16 C -0.15 -3.35 10.03 22.14 0.22 -3.12 15 17 C -0.06 -1.23 9.96 22.06 0.22 -1.01 15 18 C -0.16 -3.73 9.97 22.03 0.22 -3.51 15 19 C -0.06 -1.74 10.07 22.27 0.22 -1.51 15 20 C -0.21 -7.61 6.33 -20.24 -0.13 -7.74 15 21 H 0.26 15.40 8.31 -92.71 -0.77 14.63 15 22 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 15 23 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 15 24 H 0.09 3.65 8.14 -2.39 -0.02 3.63 15 25 H 0.07 3.13 8.14 -2.39 -0.02 3.11 15 26 H 0.16 2.36 8.06 -2.91 -0.02 2.34 15 27 H 0.17 1.83 8.06 -2.91 -0.02 1.80 15 28 H 0.15 2.57 8.06 -2.91 -0.02 2.55 15 29 H 0.13 3.88 8.06 -2.91 -0.02 3.85 15 Total: -1.00 -72.07 259.52 2.99 -69.08 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -0.76 Total: 9.09 kcal Atomic # 6 Polarization: -39.67 SS G_CDS: 2.36 Total: -37.31 kcal Atomic # 7 Polarization: -86.65 SS G_CDS: -0.64 Total: -87.30 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -72.07 2.99 -69.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117472358.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.819 kcal (2) G-P(sol) polarization free energy of solvation -72.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds