Wall clock time and date at job start Mon Mar 30 2020 02:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30448 * 1 3 3 Si 1.86799 * 119.99809 * 2 1 4 4 H 1.48496 * 109.47098 * 274.98403 * 3 2 1 5 5 H 1.48498 * 109.47387 * 34.98794 * 3 2 1 6 6 H 1.48504 * 109.47084 * 154.98587 * 3 2 1 7 7 C 1.40530 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00092 * 186.23743 * 7 2 1 9 9 C 1.41456 * 120.00140 * 6.23449 * 7 2 1 10 10 O 1.21854 * 120.00143 * 353.72470 * 9 7 2 11 11 C 1.47615 * 120.00174 * 173.72453 * 9 7 2 12 12 N 1.31286 * 125.14836 * 0.02562 * 11 9 7 13 13 C 1.34277 * 109.79293 * 179.97438 * 12 11 9 14 14 C 1.40352 * 133.39321 * 179.97438 * 13 12 11 15 15 C 1.36363 * 119.85455 * 180.02562 * 14 13 12 16 16 C 1.39027 * 120.75124 * 0.02562 * 15 14 13 17 17 C 1.37851 * 120.55176 * 359.97438 * 16 15 14 18 18 C 1.38847 * 119.72912 * 0.03889 * 17 16 15 19 19 N 1.37054 * 125.15027 * 180.02562 * 11 9 7 20 20 H 0.97002 * 126.48411 * 359.97438 * 19 11 9 21 21 H 0.96998 * 119.99841 * 0.02562 * 1 2 3 22 22 H 1.07997 * 120.07374 * 0.03135 * 14 13 12 23 23 H 1.08002 * 119.62500 * 179.97438 * 15 14 13 24 24 H 1.08003 * 119.72316 * 179.97438 * 16 15 14 25 25 H 1.08000 * 120.13685 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3045 0.0000 0.0000 3 14 2.2384 1.6178 0.0000 4 1 2.3806 2.1072 -1.3947 5 1 1.4926 2.6200 0.8028 6 1 3.5847 1.4121 0.5920 7 6 2.0071 -1.2170 0.0005 8 1 3.0823 -1.2198 0.1022 9 6 1.3061 -2.4385 -0.1319 10 8 0.0876 -2.4449 -0.1315 11 6 2.0507 -3.7056 -0.2707 12 7 3.3589 -3.8160 -0.2834 13 6 3.7050 -5.1057 -0.4239 14 6 4.9389 -5.7705 -0.4973 15 6 4.9722 -7.1256 -0.6451 16 6 3.7951 -7.8611 -0.7250 17 6 2.5701 -7.2327 -0.6555 18 6 2.5112 -5.8537 -0.5054 19 7 1.4811 -4.9448 -0.4058 20 1 0.5320 -5.1442 -0.4267 21 1 -0.4850 0.8400 -0.0004 22 1 5.8600 -5.2099 -0.4368 23 1 5.9238 -7.6333 -0.7017 24 1 3.8408 -8.9338 -0.8424 25 1 1.6599 -7.8106 -0.7187 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118626577.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:53 Heat of formation + Delta-G solvation = 21.607479 kcal Electronic energy + Delta-G solvation = -13301.756421 eV Core-core repulsion = 10859.567145 eV Total energy + Delta-G solvation = -2442.189276 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.39522 -37.20904 -36.10629 -32.97317 -32.54463 -29.51889 -29.10527 -27.02110 -23.54761 -21.88597 -21.12553 -19.70953 -17.53542 -16.63075 -16.27708 -15.57968 -14.66292 -14.54735 -13.86459 -13.59042 -13.48420 -12.88228 -12.21517 -11.75679 -11.51457 -11.31117 -11.14926 -10.95741 -10.54014 -10.43362 -10.17388 -9.27222 -9.12677 -7.93563 -7.91386 -7.57986 -6.58711 -5.10297 1.29044 1.93489 2.90870 3.08445 3.14542 3.18564 3.54857 3.94423 4.17344 4.43454 4.83349 5.13600 5.30928 5.51531 5.55732 5.77934 5.84516 6.08427 6.12917 6.43583 6.80104 6.83016 6.99198 7.09162 7.29718 7.96836 8.04324 8.41473 8.59464 8.69651 10.01713 10.24505 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.057054 B = 0.007472 C = 0.006627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.648921 B = 3746.187100 C = 4224.331555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.073 3.927 3 Si 0.920 3.080 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.256 1.256 7 C -0.468 4.468 8 H 0.092 0.908 9 C 0.404 3.596 10 O -0.545 6.545 11 C 0.281 3.719 12 N -0.480 5.480 13 C 0.053 3.947 14 C -0.070 4.070 15 C -0.137 4.137 16 C -0.122 4.122 17 C -0.108 4.108 18 C 0.027 3.973 19 N -0.585 5.585 20 H 0.425 0.575 21 H 0.279 0.721 22 H 0.125 0.875 23 H 0.121 0.879 24 H 0.122 0.878 25 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.613 -8.363 -1.047 10.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.353 5.353 2 C -0.152 4.152 3 Si 0.743 3.257 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.179 1.179 7 C -0.500 4.500 8 H 0.110 0.890 9 C 0.300 3.700 10 O -0.434 6.434 11 C 0.017 3.983 12 N -0.202 5.202 13 C -0.070 4.070 14 C -0.090 4.090 15 C -0.157 4.157 16 C -0.142 4.142 17 C -0.129 4.129 18 C -0.086 4.086 19 N -0.194 5.194 20 H 0.264 0.736 21 H 0.090 0.910 22 H 0.143 0.857 23 H 0.139 0.861 24 H 0.140 0.860 25 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.432 -7.646 -0.970 9.429 hybrid contribution -0.567 -0.210 -0.133 0.619 sum 4.865 -7.856 -1.102 9.306 Atomic orbital electron populations 1.69925 1.07849 1.28910 1.28574 1.26167 0.94769 1.01593 0.92690 0.86119 0.80655 0.79664 0.79274 1.19194 1.20003 1.17939 1.20877 0.96516 0.90044 1.42559 0.89005 1.17440 0.87728 0.82870 0.81925 1.90587 1.14131 1.86353 1.52303 1.26434 0.88975 0.88531 0.94385 1.70400 1.10985 1.16906 1.21886 1.19335 0.93053 0.90231 1.04404 1.20058 0.95101 0.93689 1.00132 1.20497 0.98000 0.93493 1.03738 1.20750 0.91567 0.99173 1.02661 1.19897 0.98367 0.90064 1.04612 1.19177 0.89580 0.92441 1.07356 1.43368 1.09023 1.06752 1.60235 0.73649 0.90989 0.85745 0.86058 0.86036 0.86605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.92 11.75 55.58 0.65 -19.26 15 2 C 0.07 1.90 5.50 -17.28 -0.09 1.80 15 3 Si 0.92 18.91 29.57 -169.99 -5.03 13.88 15 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 15 5 H -0.27 -5.44 7.11 56.52 0.40 -5.04 15 6 H -0.26 -5.17 7.11 56.52 0.40 -4.77 15 7 C -0.47 -12.91 9.10 -37.49 -0.34 -13.25 15 8 H 0.09 2.44 7.64 -52.49 -0.40 2.04 15 9 C 0.40 11.41 6.92 -34.53 -0.24 11.17 15 10 O -0.55 -16.59 15.65 5.05 0.08 -16.51 15 11 C 0.28 7.03 7.83 -154.34 -1.21 5.82 15 12 N -0.48 -11.67 10.81 -8.74 -0.09 -11.76 15 13 C 0.05 1.11 7.21 -84.92 -0.61 0.49 15 14 C -0.07 -1.19 10.07 -39.46 -0.40 -1.59 15 15 C -0.14 -1.90 9.96 -39.96 -0.40 -2.29 15 16 C -0.12 -1.64 10.03 -39.43 -0.40 -2.04 15 17 C -0.11 -1.69 10.07 -39.50 -0.40 -2.08 15 18 C 0.03 0.53 7.30 -83.90 -0.61 -0.09 15 19 N -0.59 -12.41 6.24 -8.39 -0.05 -12.46 15 20 H 0.42 8.02 8.96 -40.82 -0.37 7.66 15 21 H 0.28 6.80 8.29 -40.82 -0.34 6.46 15 22 H 0.12 1.89 8.06 -52.49 -0.42 1.46 15 23 H 0.12 1.28 8.06 -52.49 -0.42 0.85 15 24 H 0.12 1.23 8.06 -52.48 -0.42 0.81 15 25 H 0.12 1.49 8.06 -52.49 -0.42 1.07 15 LS Contribution 236.45 15.07 3.56 3.56 Total: -1.00 -31.85 236.45 -7.17 -39.02 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -1.59 Total: 5.58 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -4.70 Total: -2.05 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 0.51 Total: -43.49 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.08 Total: -16.51 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -31.85 -7.17 -39.02 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118626577.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.623 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds