Wall clock time and date at job start Mon Mar 30 2020 02:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00147 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00098 * 3 2 1 6 6 H 1.48504 * 109.46913 * 329.99897 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99776 * 0.02562 * 7 2 1 9 9 N 1.37090 * 119.99992 * 179.97438 * 7 2 1 10 10 C 1.34784 * 119.99714 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00111 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99627 * 180.02562 * 10 9 7 13 13 H 1.09008 * 109.40903 * 319.99050 * 12 10 9 14 14 C 1.53245 * 109.41320 * 79.83431 * 12 10 9 15 15 S 1.81902 * 108.50744 * 182.18219 * 14 12 10 16 16 C 1.81905 * 101.86673 * 308.59146 * 15 14 12 17 17 C 1.53251 * 108.50454 * 51.34220 * 16 15 14 18 18 N 1.46467 * 109.86050 * 297.99602 * 17 16 15 19 19 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 20 20 H 0.96999 * 120.00238 * 359.97438 * 9 7 2 21 21 H 1.08994 * 109.63030 * 301.83138 * 14 12 10 22 22 H 1.09003 * 109.62982 * 62.41479 * 14 12 10 23 23 H 1.08997 * 109.62903 * 291.63868 * 16 15 14 24 24 H 1.08996 * 109.62744 * 171.04766 * 16 15 14 25 25 H 1.08997 * 109.40375 * 177.87710 * 17 16 15 26 26 H 1.08994 * 109.33923 * 58.07806 * 17 16 15 27 27 H 1.00902 * 111.00078 * 307.55342 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 1.4001 5 1 3.5457 1.4402 -0.7001 6 1 1.4455 2.6527 -0.7001 7 6 2.0090 -1.2034 0.0005 8 1 1.4690 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3706 0.0000 11 8 3.4473 -3.4210 0.0009 12 6 5.5607 -2.3705 0.0000 13 1 5.9229 -1.5830 -0.6610 14 6 6.0701 -2.1154 1.4226 15 16 7.8877 -2.0556 1.3832 16 6 8.2937 -3.5977 0.5080 17 6 7.4783 -3.6504 -0.7885 18 7 6.0474 -3.6674 -0.4760 19 1 -0.4850 0.8401 0.0004 20 1 3.8649 -0.3633 -0.0011 21 1 5.6811 -1.1642 1.7858 22 1 5.7434 -2.9222 2.0787 23 1 8.0400 -4.4523 1.1351 24 1 9.3577 -3.6157 0.2724 25 1 7.7385 -4.5516 -1.3436 26 1 7.7063 -2.7734 -1.3942 27 1 5.8300 -4.3994 0.1835 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126850321.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:47 Heat of formation + Delta-G solvation = -55.739806 kcal Electronic energy + Delta-G solvation = -12697.645603 eV Core-core repulsion = 10387.546248 eV Total energy + Delta-G solvation = -2310.099355 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 216.067 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.69621 -37.98818 -36.01024 -33.87631 -32.72339 -29.41580 -27.40886 -24.79368 -23.20461 -21.31412 -20.39920 -18.53662 -17.42351 -16.72973 -16.23034 -16.01047 -15.55908 -15.37237 -15.15294 -14.76137 -14.47701 -14.17715 -13.95098 -13.04451 -12.79349 -12.67297 -12.44050 -12.34111 -11.97458 -11.54898 -11.17610 -10.49892 -10.28345 -9.65823 -8.69567 -8.43704 -6.04902 0.60357 1.29096 1.30738 1.37197 1.43004 1.88908 2.20817 2.63639 3.09692 3.28205 3.63277 3.79658 3.92766 4.10224 4.13496 4.36645 4.43577 4.60723 4.74967 4.93954 5.48666 5.83362 5.95398 6.23844 6.54803 6.83526 7.34129 7.88641 8.73573 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.045934 B = 0.008545 C = 0.007642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.418244 B = 3275.871668 C = 3663.296099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.009 4.009 3 Si 0.958 3.042 4 H -0.255 1.255 5 H -0.234 1.234 6 H -0.273 1.273 7 C -0.330 4.330 8 H 0.058 0.942 9 N -0.584 5.584 10 C 0.461 3.539 11 O -0.611 6.611 12 C 0.098 3.902 13 H 0.118 0.882 14 C -0.105 4.105 15 S -0.270 6.270 16 C -0.114 4.114 17 C 0.063 3.937 18 N -0.687 5.687 19 H 0.280 0.720 20 H 0.388 0.612 21 H 0.115 0.885 22 H 0.084 0.916 23 H 0.091 0.909 24 H 0.136 0.864 25 H 0.112 0.888 26 H 0.089 0.911 27 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.268 -0.438 0.812 19.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.209 4.209 3 Si 0.778 3.222 4 H -0.179 1.179 5 H -0.157 1.157 6 H -0.198 1.198 7 C -0.459 4.459 8 H 0.076 0.924 9 N -0.225 5.225 10 C 0.247 3.753 11 O -0.495 6.495 12 C -0.018 4.018 13 H 0.136 0.864 14 C -0.256 4.256 15 S -0.043 6.043 16 C -0.264 4.264 17 C -0.067 4.067 18 N -0.318 5.318 19 H 0.090 0.910 20 H 0.224 0.776 21 H 0.133 0.867 22 H 0.102 0.898 23 H 0.109 0.891 24 H 0.154 0.846 25 H 0.130 0.870 26 H 0.108 0.892 27 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 19.201 -0.137 0.588 19.211 hybrid contribution -0.851 -0.040 0.557 1.018 sum 18.350 -0.177 1.145 18.387 Atomic orbital electron populations 1.69792 1.08062 1.29335 1.49843 1.26058 0.96410 1.02515 0.95897 0.85458 0.79548 0.77073 0.80117 1.17926 1.15713 1.19758 1.19012 0.81238 0.95064 1.50554 0.92370 1.42021 1.05934 1.07390 1.67144 1.20560 0.89868 0.83458 0.81449 1.90532 1.71037 1.32729 1.55188 1.21392 0.90580 0.94777 0.95081 0.86410 1.24081 0.94676 1.07324 0.99543 1.86960 1.05670 1.33882 1.77806 1.24412 1.06376 0.95802 0.99810 1.22390 0.83657 1.05417 0.95281 1.59523 1.16790 1.04192 1.51267 0.91015 0.77600 0.86665 0.89770 0.89070 0.84572 0.86971 0.89223 0.82961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.73 13.96 21.66 0.30 -55.43 15 2 C -0.01 -0.52 5.50 84.93 0.47 -0.06 15 3 Si 0.96 38.68 27.74 68.60 1.90 40.58 15 4 H -0.25 -9.72 7.11 99.48 0.71 -9.01 15 5 H -0.23 -8.07 6.52 99.48 0.65 -7.42 15 6 H -0.27 -10.90 7.11 99.48 0.71 -10.20 15 7 C -0.33 -19.23 10.16 84.04 0.85 -18.38 15 8 H 0.06 4.03 7.39 -2.91 -0.02 4.01 15 9 N -0.58 -27.61 5.09 -306.98 -1.56 -29.17 15 10 C 0.46 20.88 7.03 87.65 0.62 21.50 15 11 O -0.61 -33.72 16.00 -3.07 -0.05 -33.77 15 12 C 0.10 3.09 2.68 44.33 0.12 3.21 15 13 H 0.12 3.37 7.91 -2.38 -0.02 3.35 15 14 C -0.11 -2.90 5.85 72.06 0.42 -2.48 15 15 S -0.27 -6.13 22.40 -56.49 -1.27 -7.40 15 16 C -0.11 -1.89 6.59 72.07 0.47 -1.42 15 17 C 0.06 1.19 6.42 86.47 0.56 1.74 15 18 N -0.69 -19.74 5.95 -496.55 -2.96 -22.69 15 19 H 0.28 15.32 8.31 -92.71 -0.77 14.55 15 20 H 0.39 15.42 5.76 -92.71 -0.53 14.88 15 21 H 0.12 3.11 8.14 -2.39 -0.02 3.09 15 22 H 0.08 2.43 8.14 -2.39 -0.02 2.41 15 23 H 0.09 1.46 8.14 -2.39 -0.02 1.44 15 24 H 0.14 1.59 8.14 -2.39 -0.02 1.57 15 25 H 0.11 1.68 8.14 -2.39 -0.02 1.66 15 26 H 0.09 1.66 7.91 -2.39 -0.02 1.64 15 27 H 0.35 10.38 8.45 -89.69 -0.76 9.62 15 Total: -1.00 -71.88 242.53 -0.28 -72.15 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: -0.16 Total: 31.61 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 3.51 Total: 4.12 kcal Atomic # 7 Polarization: -103.08 SS G_CDS: -4.22 Total: -107.30 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -0.05 Total: -33.77 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 1.90 Total: 40.58 kcal Atomic # 16 Polarization: -6.13 SS G_CDS: -1.27 Total: -7.40 kcal Total: -71.88 -0.28 -72.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126850321.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.414 kcal (2) G-P(sol) polarization free energy of solvation -71.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds