Wall clock time and date at job start Mon Mar 30 2020 03:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00424 * 2 1 4 4 H 1.48497 * 109.47064 * 270.00191 * 3 2 1 5 5 H 1.48504 * 109.46852 * 30.00372 * 3 2 1 6 6 H 1.48495 * 109.47146 * 149.99883 * 3 2 1 7 7 C 1.37884 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00104 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99879 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46955 * 180.02562 * 9 7 2 11 11 C 1.47209 * 109.46797 * 180.02562 * 10 9 7 12 12 C 5.96655 * 86.22278 * 180.02562 * 2 1 3 13 13 C 7.27869 * 81.23545 * 180.02562 * 2 1 3 14 14 N 1.32795 * 119.80708 * 332.21876 * 13 12 11 15 15 C 1.31685 * 121.67659 * 180.02562 * 14 13 12 16 16 C 1.38390 * 121.08728 * 359.74167 * 15 14 13 17 17 C 1.38592 * 119.48151 * 0.49009 * 16 15 14 18 18 C 1.39138 * 118.45891 * 359.51800 * 17 16 15 19 19 N 1.39424 * 120.55085 * 180.23018 * 18 17 16 20 20 H 0.97003 * 120.00180 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.46884 * 59.99806 * 9 7 2 22 22 H 1.09001 * 109.47302 * 300.00249 * 9 7 2 23 23 H 1.08997 * 109.47146 * 60.00519 * 10 9 7 24 24 H 1.08996 * 109.47655 * 299.99991 * 10 9 7 25 25 H 1.07997 * 119.46272 * 179.97438 * 15 14 13 26 26 H 1.07995 * 120.26220 * 180.28312 * 16 15 14 27 27 H 1.08002 * 120.77415 * 179.80242 * 17 16 15 28 28 H 0.96996 * 120.00008 * 0.02562 * 19 18 17 29 29 H 0.96998 * 120.00261 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.5090 -4.9370 -0.0012 12 6 0.9220 -5.9536 -0.0027 13 6 0.2060 -7.1937 -0.0032 14 7 -1.0070 -7.2558 0.5336 15 6 -1.6978 -8.3767 0.5536 16 6 -1.1864 -9.5411 0.0078 17 6 0.0777 -9.5303 -0.5603 18 6 0.7898 -8.3350 -0.5705 19 7 2.0631 -8.2734 -1.1350 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8897 23 1 2.8717 -3.6045 0.8895 24 1 2.8718 -3.6045 -0.8905 25 1 -2.6812 -8.3867 0.9998 26 1 -1.7664 -10.4519 0.0274 27 1 0.4984 -10.4277 -0.9893 28 1 2.4595 -9.0680 -1.5253 29 1 2.5527 -7.4361 -1.1374 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000138613471.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:33 Heat of formation + Delta-G solvation = 66.695225 kcal Electronic energy + Delta-G solvation = -12698.620515 eV Core-core repulsion = 10394.219485 eV Total energy + Delta-G solvation = -2304.401030 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.09058 -35.29439 -34.70695 -33.07559 -31.86745 -30.10393 -28.65635 -25.53378 -23.64677 -22.77150 -21.22458 -18.12655 -17.45821 -16.92423 -16.37571 -15.09537 -14.67610 -14.46784 -14.30178 -13.62403 -13.59924 -13.10509 -12.39305 -12.22939 -11.45964 -11.38184 -11.09869 -10.80688 -10.65040 -10.24039 -9.89556 -9.47209 -9.17712 -9.09168 -8.98852 -8.35851 -7.51870 -6.00088 -4.04331 0.98492 1.47653 3.06127 3.25288 3.32622 3.38834 3.41930 3.69615 4.28114 4.33235 4.46601 4.79952 4.98578 5.05414 5.35470 5.36255 5.47971 5.81910 6.13340 6.31366 6.35116 6.48678 6.61533 6.84100 7.25708 7.56676 7.66398 7.76345 7.98434 8.06258 8.20318 8.36237 9.02522 9.59705 11.11109 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.059343 B = 0.004688 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.721993 B = 5970.766990 C = 6372.970720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.016 4.016 11 C -0.080 4.080 12 C -0.203 4.203 13 C 0.183 3.817 14 N -0.433 5.433 15 C 0.042 3.958 16 C -0.127 4.127 17 C -0.161 4.161 18 C 0.185 3.815 19 N -0.862 5.862 20 H 0.262 0.738 21 H 0.021 0.979 22 H 0.023 0.977 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.155 0.845 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.398 0.602 29 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.825 -18.879 -1.761 19.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.052 4.052 11 C -0.083 4.083 12 C -0.204 4.204 13 C 0.042 3.958 14 N -0.140 5.140 15 C -0.119 4.119 16 C -0.148 4.148 17 C -0.192 4.192 18 C 0.076 3.924 19 N -0.401 5.401 20 H 0.071 0.929 21 H 0.040 0.960 22 H 0.041 0.959 23 H 0.099 0.901 24 H 0.098 0.902 25 H 0.172 0.828 26 H 0.151 0.849 27 H 0.151 0.849 28 H 0.227 0.773 29 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 1.263 -18.030 -1.381 18.127 hybrid contribution 0.979 0.107 -0.534 1.120 sum 2.242 -17.924 -1.915 18.164 Atomic orbital electron populations 1.69981 1.06106 1.26750 1.50177 1.25037 0.94858 0.99350 0.95184 0.86550 0.79785 0.83307 0.78088 1.20643 1.21194 1.19814 1.21190 0.93075 0.90710 1.51425 0.92315 1.19090 0.93721 0.89965 0.98233 1.19224 0.97800 0.86227 1.01953 1.23294 0.96339 0.92851 0.95786 1.18155 1.01552 0.94770 1.05917 1.15972 0.90824 0.88009 1.00989 1.67646 1.05023 1.28397 1.12954 1.22464 1.00251 0.87852 1.01303 1.21941 0.95369 0.99722 0.97740 1.20923 0.96046 0.96414 1.05797 1.18661 0.86891 0.93816 0.92994 1.42369 1.15995 1.15353 1.66353 0.92863 0.96041 0.95898 0.90101 0.90238 0.82788 0.84862 0.84948 0.77320 0.76460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.24 13.29 55.43 0.74 -26.50 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 3 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 15 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 15 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 7 C -0.53 -14.82 9.11 -34.44 -0.31 -15.13 15 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 15 9 C 0.03 0.72 4.93 -27.88 -0.14 0.58 15 10 C -0.02 -0.33 5.64 -29.51 -0.17 -0.49 15 11 C -0.08 -1.63 13.34 -37.12 -0.50 -2.12 15 12 C -0.20 -4.02 12.22 -38.84 -0.47 -4.49 15 13 C 0.18 3.23 6.61 -84.80 -0.56 2.67 15 14 N -0.43 -7.70 10.28 -10.98 -0.11 -7.81 15 15 C 0.04 0.55 11.17 -17.56 -0.20 0.36 15 16 C -0.13 -1.33 10.10 -39.39 -0.40 -1.73 15 17 C -0.16 -1.74 10.04 -39.12 -0.39 -2.14 15 18 C 0.19 2.51 6.78 -83.34 -0.57 1.94 15 19 N -0.86 -9.22 9.01 32.65 0.29 -8.92 15 20 H 0.26 7.51 8.31 -40.82 -0.34 7.17 15 21 H 0.02 0.61 8.14 -51.92 -0.42 0.18 15 22 H 0.02 0.65 8.14 -51.93 -0.42 0.23 15 23 H 0.08 1.58 8.14 -51.93 -0.42 1.16 15 24 H 0.08 1.51 8.14 -51.93 -0.42 1.09 15 25 H 0.15 1.59 8.06 -52.49 -0.42 1.17 15 26 H 0.13 0.92 8.06 -52.49 -0.42 0.50 15 27 H 0.13 1.00 8.06 -52.49 -0.42 0.58 15 28 H 0.40 2.89 8.85 -40.82 -0.36 2.53 15 29 H 0.41 4.60 7.70 -40.82 -0.31 4.28 15 LS Contribution 268.17 15.07 4.04 4.04 Total: -1.00 -33.25 268.17 -7.04 -40.28 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -3.18 Total: 1.33 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -3.80 Total: -19.00 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.92 Total: -43.23 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.25 -7.04 -40.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000138613471.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.980 kcal (2) G-P(sol) polarization free energy of solvation -33.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds