Wall clock time and date at job start Mon Mar 30 2020 03:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00424 * 2 1 4 4 H 1.48497 * 109.47064 * 270.00191 * 3 2 1 5 5 H 1.48504 * 109.46852 * 30.00372 * 3 2 1 6 6 H 1.48495 * 109.47146 * 149.99883 * 3 2 1 7 7 C 1.37884 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00104 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99879 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46955 * 180.02562 * 9 7 2 11 11 C 1.47209 * 109.46797 * 180.02562 * 10 9 7 12 12 C 5.96655 * 86.22278 * 180.02562 * 2 1 3 13 13 C 7.27869 * 81.23545 * 180.02562 * 2 1 3 14 14 N 1.32795 * 119.80708 * 332.21876 * 13 12 11 15 15 C 1.31685 * 121.67659 * 180.02562 * 14 13 12 16 16 C 1.38390 * 121.08728 * 359.74167 * 15 14 13 17 17 C 1.38592 * 119.48151 * 0.49009 * 16 15 14 18 18 C 1.39138 * 118.45891 * 359.51800 * 17 16 15 19 19 N 1.39424 * 120.55085 * 180.23018 * 18 17 16 20 20 H 0.97003 * 120.00180 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.46884 * 59.99806 * 9 7 2 22 22 H 1.09001 * 109.47302 * 300.00249 * 9 7 2 23 23 H 1.08997 * 109.47146 * 60.00519 * 10 9 7 24 24 H 1.08996 * 109.47655 * 299.99991 * 10 9 7 25 25 H 1.07997 * 119.46272 * 179.97438 * 15 14 13 26 26 H 1.07995 * 120.26220 * 180.28312 * 16 15 14 27 27 H 1.08002 * 120.77415 * 179.80242 * 17 16 15 28 28 H 0.96996 * 120.00008 * 0.02562 * 19 18 17 29 29 H 0.96998 * 120.00261 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.5090 -4.9370 -0.0012 12 6 0.9220 -5.9536 -0.0027 13 6 0.2060 -7.1937 -0.0032 14 7 -1.0070 -7.2558 0.5336 15 6 -1.6978 -8.3767 0.5536 16 6 -1.1864 -9.5411 0.0078 17 6 0.0777 -9.5303 -0.5603 18 6 0.7898 -8.3350 -0.5705 19 7 2.0631 -8.2734 -1.1350 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8897 23 1 2.8717 -3.6045 0.8895 24 1 2.8718 -3.6045 -0.8905 25 1 -2.6812 -8.3867 0.9998 26 1 -1.7664 -10.4519 0.0274 27 1 0.4984 -10.4277 -0.9893 28 1 2.4595 -9.0680 -1.5253 29 1 2.5527 -7.4361 -1.1374 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000138613471.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:33 Heat of formation + Delta-G solvation = 43.783325 kcal Electronic energy + Delta-G solvation = -12699.614050 eV Core-core repulsion = 10394.219485 eV Total energy + Delta-G solvation = -2305.394565 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.11920 -36.65515 -36.12869 -34.78777 -33.34550 -31.59006 -29.86891 -27.42076 -24.91052 -23.80829 -23.14244 -19.36128 -18.57918 -18.39125 -17.81333 -16.53469 -16.16122 -15.75961 -15.65653 -15.19772 -15.00106 -14.34477 -14.01050 -13.51279 -13.11371 -13.00461 -12.66960 -12.45168 -12.37450 -12.08536 -11.47813 -11.33822 -10.95489 -10.58529 -10.39446 -10.18168 -8.55872 -8.20696 -6.34228 -0.09435 0.51738 1.41820 1.44744 1.53867 1.57524 1.93683 2.42052 2.79855 3.06228 3.11780 3.12753 3.92145 4.00736 4.19853 4.22365 4.61462 4.62235 4.73691 4.85521 4.94500 5.12904 5.23962 5.45216 5.59187 5.67869 5.78875 6.14977 6.29523 6.52705 6.81993 6.84906 7.14370 7.35862 8.92043 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.059343 B = 0.004688 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.721993 B = 5970.766990 C = 6372.970720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.975 3.025 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.257 1.257 7 C -0.542 4.542 8 H 0.076 0.924 9 C 0.032 3.968 10 C 0.004 3.996 11 C -0.132 4.132 12 C -0.183 4.183 13 C 0.114 3.886 14 N -0.480 5.480 15 C 0.025 3.975 16 C -0.101 4.101 17 C -0.153 4.153 18 C 0.191 3.809 19 N -0.851 5.851 20 H 0.264 0.736 21 H -0.012 1.012 22 H -0.015 1.015 23 H 0.094 0.906 24 H 0.099 0.901 25 H 0.177 0.823 26 H 0.182 0.818 27 H 0.176 0.824 28 H 0.417 0.583 29 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.822 -21.117 -2.282 21.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.799 3.201 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.181 1.181 7 C -0.580 4.580 8 H 0.094 0.906 9 C -0.006 4.006 10 C -0.033 4.033 11 C -0.135 4.135 12 C -0.184 4.184 13 C -0.025 4.025 14 N -0.189 5.189 15 C -0.136 4.136 16 C -0.121 4.121 17 C -0.183 4.183 18 C 0.080 3.920 19 N -0.390 5.390 20 H 0.073 0.927 21 H 0.006 0.994 22 H 0.004 0.996 23 H 0.112 0.888 24 H 0.117 0.883 25 H 0.194 0.806 26 H 0.199 0.801 27 H 0.194 0.806 28 H 0.249 0.751 29 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 2.320 -20.291 -1.924 20.513 hybrid contribution 0.529 0.540 -0.380 0.847 sum 2.850 -19.750 -2.304 20.087 Atomic orbital electron populations 1.70149 1.08240 1.27955 1.51413 1.26129 0.95772 1.03927 0.94519 0.85298 0.78626 0.77626 0.78572 1.19595 1.21064 1.18073 1.21670 0.94069 0.91376 1.50904 0.90583 1.18926 0.94194 0.92618 0.94816 1.18891 0.96491 0.84351 1.03526 1.23203 0.98180 0.93521 0.98636 1.18965 1.00110 0.95228 1.04085 1.16103 0.92094 0.88507 1.05756 1.67472 1.05825 1.31240 1.14327 1.23021 1.00977 0.87857 1.01792 1.22469 0.95161 1.00171 0.94339 1.21488 0.95781 0.96524 1.04549 1.18782 0.87654 0.93557 0.91980 1.42385 1.15086 1.16089 1.65458 0.92733 0.99381 0.99616 0.88832 0.88307 0.80632 0.80077 0.80617 0.75132 0.76928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.35 13.29 21.45 0.28 -59.07 15 2 C -0.01 -0.35 5.46 84.66 0.46 0.11 15 3 Si 0.98 44.61 29.54 68.60 2.03 46.63 15 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 15 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 15 6 H -0.26 -10.99 7.11 99.48 0.71 -10.28 15 7 C -0.54 -31.22 9.11 25.60 0.23 -30.99 15 8 H 0.08 4.01 7.74 -2.91 -0.02 3.99 15 9 C 0.03 1.78 4.93 29.85 0.15 1.93 15 10 C 0.00 0.16 5.64 28.79 0.16 0.32 15 11 C -0.13 -5.72 13.34 31.13 0.42 -5.31 15 12 C -0.18 -7.61 12.22 30.02 0.37 -7.24 15 13 C 0.11 4.10 6.61 40.72 0.27 4.36 15 14 N -0.48 -17.38 10.28 -188.64 -1.94 -19.32 15 15 C 0.03 0.63 11.17 84.75 0.95 1.58 15 16 C -0.10 -1.70 10.10 22.39 0.23 -1.47 15 17 C -0.15 -2.68 10.04 22.57 0.23 -2.46 15 18 C 0.19 4.86 6.78 38.62 0.26 5.12 15 19 N -0.85 -16.71 9.01 -50.60 -0.46 -17.17 15 20 H 0.26 15.62 8.31 -92.71 -0.77 14.85 15 21 H -0.01 -0.76 8.14 -2.38 -0.02 -0.77 15 22 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 15 23 H 0.09 3.74 8.14 -2.39 -0.02 3.72 15 24 H 0.10 3.82 8.14 -2.39 -0.02 3.80 15 25 H 0.18 3.31 8.06 -2.91 -0.02 3.29 15 26 H 0.18 1.33 8.06 -2.91 -0.02 1.31 15 27 H 0.18 1.56 8.06 -2.91 -0.02 1.54 15 28 H 0.42 4.82 8.85 -92.71 -0.82 4.00 15 29 H 0.40 8.86 7.70 -92.71 -0.71 8.15 15 Total: -1.00 -76.94 268.17 3.28 -73.66 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -0.36 Total: 9.30 kcal Atomic # 6 Polarization: -37.76 SS G_CDS: 3.72 Total: -34.04 kcal Atomic # 7 Polarization: -93.45 SS G_CDS: -2.11 Total: -95.56 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -76.94 3.28 -73.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000138613471.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.446 kcal (2) G-P(sol) polarization free energy of solvation -76.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds