Wall clock time and date at job start Mon Mar 30 2020 02:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.53002 * 109.47153 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.62288 * 304.61462 * 10 9 7 12 12 C 1.53228 * 109.62176 * 184.04245 * 10 9 7 13 13 C 1.52965 * 109.40313 * 185.65357 * 12 10 9 14 14 C 1.52963 * 109.81227 * 63.60018 * 13 12 10 15 15 C 1.53234 * 109.40334 * 296.39711 * 14 13 12 16 16 H 1.09000 * 109.62563 * 174.34522 * 15 14 13 17 17 Cl 1.80300 * 109.78745 * 294.82584 * 15 14 13 18 18 C 1.51262 * 109.62770 * 64.99413 * 10 9 7 19 19 O 1.20763 * 120.85465 * 351.04085 * 18 10 9 20 20 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 22 22 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 23 23 H 1.08998 * 109.48710 * 305.63276 * 12 10 9 24 24 H 1.08997 * 109.48316 * 65.67579 * 12 10 9 25 25 H 1.08995 * 109.41473 * 303.49424 * 13 12 10 26 26 H 1.08998 * 109.35705 * 183.66353 * 13 12 10 27 27 H 1.09005 * 109.48088 * 176.42524 * 14 13 12 28 28 H 1.09002 * 109.49768 * 56.38721 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2453 -3.6621 -0.0121 11 1 2.9233 -3.5594 -0.8594 12 6 1.4851 -4.9886 -0.1140 13 6 2.4704 -6.1507 0.0218 14 6 3.1121 -6.1269 1.4101 15 6 3.9335 -4.8432 1.5693 16 1 4.3099 -4.7736 2.5899 17 17 5.3171 -4.8566 0.4132 18 6 3.0380 -3.6597 1.2761 19 8 2.9584 -2.7366 2.0507 20 1 -0.4850 -0.8400 0.0004 21 1 0.6281 -2.5591 0.8866 22 1 0.6207 -2.5548 -0.8933 23 1 0.7441 -5.0452 0.6834 24 1 0.9845 -5.0474 -1.0805 25 1 3.2466 -6.0582 -0.7378 26 1 1.9393 -7.0926 -0.1157 27 1 3.7647 -6.9925 1.5238 28 1 2.3327 -6.1566 2.1716 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000142230269.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:56 Heat of formation + Delta-G solvation = -75.171211 kcal Electronic energy + Delta-G solvation = -12923.942917 eV Core-core repulsion = 10578.664496 eV Total energy + Delta-G solvation = -2345.278421 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 216.066 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.60088 -36.41449 -35.49074 -33.63530 -31.31420 -28.82654 -26.19387 -23.10065 -21.97262 -20.88133 -18.57767 -16.66287 -15.78403 -15.51546 -14.66148 -14.56363 -13.64799 -13.50853 -13.02706 -12.78342 -12.16914 -11.94346 -11.70322 -11.18358 -11.03090 -10.93778 -10.77208 -10.50033 -10.34452 -10.28124 -10.04596 -9.73665 -8.72129 -8.45320 -8.20298 -6.24949 -3.90598 1.80297 2.95493 3.51566 3.55433 3.70524 4.24203 4.63490 4.64494 4.73307 5.00815 5.30240 5.38014 5.52037 5.63942 5.68170 5.75839 5.94592 6.07242 6.15675 6.39401 6.54630 6.71769 7.30843 7.47258 8.05824 8.26955 8.56590 8.98869 9.77472 11.16222 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.039955 B = 0.009650 C = 0.008534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.615224 B = 2900.742753 C = 3280.308595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.014 3.986 3 Si 1.069 2.931 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.579 4.579 8 H 0.046 0.954 9 C 0.021 3.979 10 C -0.118 4.118 11 H 0.097 0.903 12 C -0.113 4.113 13 C -0.127 4.127 14 C -0.117 4.117 15 C -0.054 4.054 16 H 0.112 0.888 17 Cl -0.157 7.157 18 C 0.358 3.642 19 O -0.399 6.399 20 H 0.266 0.734 21 H 0.011 0.989 22 H 0.015 0.985 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.380 -13.568 1.011 15.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.189 4.189 3 Si 0.898 3.102 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.618 4.618 8 H 0.064 0.936 9 C -0.016 4.016 10 C -0.137 4.137 11 H 0.115 0.885 12 C -0.150 4.150 13 C -0.165 4.165 14 C -0.155 4.155 15 C -0.098 4.098 16 H 0.130 0.870 17 Cl -0.131 7.131 18 C 0.228 3.772 19 O -0.267 6.267 20 H 0.077 0.923 21 H 0.029 0.971 22 H 0.033 0.967 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.251 -11.404 1.356 13.075 hybrid contribution 0.427 -1.786 0.013 1.836 sum 6.678 -13.190 1.370 14.847 Atomic orbital electron populations 1.70762 1.06830 1.30322 1.47716 1.25730 0.96528 1.02560 0.94051 0.83542 0.74637 0.75289 0.76715 1.21545 1.21592 1.21133 1.21901 0.93993 0.91649 1.54236 0.93599 1.19172 0.93764 0.92230 0.96419 1.21838 0.99018 0.96922 0.95909 0.88489 1.21664 0.97678 0.93015 1.02670 1.21644 0.99429 0.98987 0.96403 1.21858 0.99166 0.95008 0.99434 1.25198 0.89274 0.99574 0.95780 0.86960 1.98714 1.49390 1.99002 1.66006 1.24713 0.80006 0.84145 0.88333 1.90468 1.57069 1.32682 1.46480 0.92344 0.97112 0.96666 0.91923 0.90927 0.90762 0.91305 0.90181 0.89937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.97 13.65 55.43 0.76 -28.21 15 2 C 0.01 0.42 5.46 -17.82 -0.10 0.32 15 3 Si 1.07 26.83 29.90 -169.99 -5.08 21.74 15 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 15 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 15 7 C -0.58 -16.97 7.64 -34.44 -0.26 -17.23 15 8 H 0.05 1.36 7.50 -52.49 -0.39 0.97 15 9 C 0.02 0.54 3.47 -27.88 -0.10 0.44 15 10 C -0.12 -2.36 2.35 -91.38 -0.21 -2.57 15 11 H 0.10 1.95 8.14 -51.93 -0.42 1.53 15 12 C -0.11 -1.72 5.23 -26.63 -0.14 -1.86 15 13 C -0.13 -1.52 5.72 -26.77 -0.15 -1.67 15 14 C -0.12 -1.34 5.49 -26.63 -0.15 -1.49 15 15 C -0.05 -0.78 3.59 -27.48 -0.10 -0.88 15 16 H 0.11 1.50 8.14 -51.93 -0.42 1.08 15 17 Cl -0.16 -2.30 27.50 -51.86 -1.43 -3.73 15 18 C 0.36 7.06 5.74 -28.48 -0.16 6.90 15 19 O -0.40 -9.67 15.69 6.00 0.09 -9.57 15 20 H 0.27 8.30 7.22 -40.82 -0.29 8.01 15 21 H 0.01 0.29 7.98 -51.93 -0.41 -0.12 15 22 H 0.02 0.40 8.00 -51.93 -0.42 -0.02 15 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 24 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 25 H 0.07 0.91 7.19 -51.93 -0.37 0.53 15 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 15 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 15 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 15 LS Contribution 247.64 15.07 3.73 3.73 Total: -1.00 -32.77 247.64 -6.95 -39.72 By element: Atomic # 1 Polarization: -2.00 SS G_CDS: -3.65 Total: -5.65 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: -1.37 Total: -18.04 kcal Atomic # 7 Polarization: -28.97 SS G_CDS: 0.76 Total: -28.21 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 26.83 SS G_CDS: -5.08 Total: 21.74 kcal Atomic # 17 Polarization: -2.30 SS G_CDS: -1.43 Total: -3.73 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -32.77 -6.95 -39.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142230269.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.453 kcal (2) G-P(sol) polarization free energy of solvation -32.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds