Wall clock time and date at job start Mon Mar 30 2020 02:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.53002 * 109.47153 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.62288 * 304.61462 * 10 9 7 12 12 C 1.53228 * 109.62176 * 184.04245 * 10 9 7 13 13 C 1.52965 * 109.40313 * 185.65357 * 12 10 9 14 14 C 1.52963 * 109.81227 * 63.60018 * 13 12 10 15 15 C 1.53234 * 109.40334 * 296.39711 * 14 13 12 16 16 H 1.09000 * 109.62563 * 174.34522 * 15 14 13 17 17 Cl 1.80300 * 109.78745 * 294.82584 * 15 14 13 18 18 C 1.51262 * 109.62770 * 64.99413 * 10 9 7 19 19 O 1.20763 * 120.85465 * 351.04085 * 18 10 9 20 20 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 22 22 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 23 23 H 1.08998 * 109.48710 * 305.63276 * 12 10 9 24 24 H 1.08997 * 109.48316 * 65.67579 * 12 10 9 25 25 H 1.08995 * 109.41473 * 303.49424 * 13 12 10 26 26 H 1.08998 * 109.35705 * 183.66353 * 13 12 10 27 27 H 1.09005 * 109.48088 * 176.42524 * 14 13 12 28 28 H 1.09002 * 109.49768 * 56.38721 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2453 -3.6621 -0.0121 11 1 2.9233 -3.5594 -0.8594 12 6 1.4851 -4.9886 -0.1140 13 6 2.4704 -6.1507 0.0218 14 6 3.1121 -6.1269 1.4101 15 6 3.9335 -4.8432 1.5693 16 1 4.3099 -4.7736 2.5899 17 17 5.3171 -4.8566 0.4132 18 6 3.0380 -3.6597 1.2761 19 8 2.9584 -2.7366 2.0507 20 1 -0.4850 -0.8400 0.0004 21 1 0.6281 -2.5591 0.8866 22 1 0.6207 -2.5548 -0.8933 23 1 0.7441 -5.0452 0.6834 24 1 0.9845 -5.0474 -1.0805 25 1 3.2466 -6.0582 -0.7378 26 1 1.9393 -7.0926 -0.1157 27 1 3.7647 -6.9925 1.5238 28 1 2.3327 -6.1566 2.1716 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000142230269.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:56 Heat of formation + Delta-G solvation = -95.581781 kcal Electronic energy + Delta-G solvation = -12924.827986 eV Core-core repulsion = 10578.664496 eV Total energy + Delta-G solvation = -2346.163490 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 216.066 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.14025 -37.75448 -36.81678 -35.61071 -33.01280 -30.19255 -28.00497 -25.04631 -23.40329 -22.25712 -20.01440 -18.89497 -17.18315 -17.04532 -15.94080 -15.88078 -15.68435 -15.07061 -14.61186 -14.21642 -13.81002 -13.61058 -13.16942 -12.95478 -12.50525 -12.42882 -12.15531 -12.06544 -11.98557 -11.68364 -11.56388 -11.28405 -10.61191 -10.57488 -10.18713 -8.65825 -6.31305 0.44870 1.46556 1.56329 1.56892 1.73829 2.54611 2.82245 3.18570 3.54878 3.64267 3.90624 4.05073 4.25531 4.34343 4.40132 4.71958 4.78773 4.87852 5.02750 5.08695 5.17424 5.25723 5.34015 5.45987 5.98569 6.20041 6.48769 6.63188 7.44478 8.75867 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.039955 B = 0.009650 C = 0.008534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.615224 B = 2900.742753 C = 3280.308595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.043 4.043 3 Si 1.112 2.888 4 H -0.281 1.281 5 H -0.271 1.271 6 H -0.276 1.276 7 C -0.587 4.587 8 H 0.036 0.964 9 C 0.023 3.977 10 C -0.121 4.121 11 H 0.096 0.904 12 C -0.107 4.107 13 C -0.121 4.121 14 C -0.113 4.113 15 C -0.044 4.044 16 H 0.128 0.872 17 Cl -0.154 7.154 18 C 0.357 3.643 19 O -0.457 6.457 20 H 0.254 0.746 21 H -0.017 1.017 22 H 0.002 0.998 23 H 0.060 0.940 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.104 0.896 27 H 0.115 0.885 28 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.683 -15.392 0.952 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.239 4.239 3 Si 0.934 3.066 4 H -0.207 1.207 5 H -0.196 1.196 6 H -0.202 1.202 7 C -0.625 4.625 8 H 0.055 0.945 9 C -0.014 4.014 10 C -0.140 4.140 11 H 0.114 0.886 12 C -0.145 4.145 13 C -0.158 4.158 14 C -0.150 4.150 15 C -0.088 4.088 16 H 0.146 0.854 17 Cl -0.127 7.127 18 C 0.231 3.769 19 O -0.329 6.329 20 H 0.064 0.936 21 H 0.001 0.999 22 H 0.021 0.979 23 H 0.079 0.921 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.122 0.878 27 H 0.133 0.867 28 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.563 -13.273 1.279 15.330 hybrid contribution 0.009 -1.249 0.003 1.250 sum 7.571 -14.522 1.282 16.428 Atomic orbital electron populations 1.70889 1.07691 1.29634 1.49907 1.27221 0.96722 1.06538 0.93401 0.82998 0.74357 0.71773 0.77424 1.20671 1.19590 1.20165 1.22252 0.93750 0.93404 1.53118 0.94542 1.19050 0.94399 0.93675 0.94286 1.21789 0.98259 0.97325 0.96583 0.88635 1.21652 0.98108 0.91674 1.03069 1.21636 0.98747 0.98616 0.96766 1.21979 0.99553 0.94085 0.99428 1.25089 0.88868 0.98398 0.96493 0.85413 1.98722 1.49033 1.98952 1.66029 1.25248 0.79763 0.84806 0.87104 1.90448 1.59003 1.35328 1.48128 0.93638 0.99854 0.97946 0.92104 0.90294 0.90689 0.87802 0.86670 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.03 13.65 21.45 0.29 -60.73 15 2 C -0.04 -2.61 5.46 84.65 0.46 -2.15 15 3 Si 1.11 54.33 29.90 68.60 2.05 56.38 15 4 H -0.28 -13.27 7.11 99.48 0.71 -12.56 15 5 H -0.27 -12.28 7.11 99.48 0.71 -11.57 15 6 H -0.28 -13.02 7.11 99.48 0.71 -12.31 15 7 C -0.59 -35.32 7.64 25.60 0.20 -35.13 15 8 H 0.04 2.21 7.50 -2.91 -0.02 2.19 15 9 C 0.02 1.21 3.47 29.85 0.10 1.32 15 10 C -0.12 -4.82 2.35 -11.28 -0.03 -4.85 15 11 H 0.10 3.83 8.14 -2.39 -0.02 3.81 15 12 C -0.11 -3.10 5.23 30.66 0.16 -2.94 15 13 C -0.12 -2.40 5.72 30.57 0.17 -2.23 15 14 C -0.11 -2.12 5.49 30.66 0.17 -1.96 15 15 C -0.04 -1.18 3.59 30.11 0.11 -1.07 15 16 H 0.13 3.08 8.14 -2.39 -0.02 3.07 15 17 Cl -0.15 -4.11 27.50 -2.72 -0.07 -4.19 15 18 C 0.36 13.96 5.74 29.46 0.17 14.13 15 19 O -0.46 -22.64 15.69 -1.46 -0.02 -22.66 15 20 H 0.25 16.54 7.22 -92.71 -0.67 15.87 15 21 H -0.02 -0.98 7.98 -2.39 -0.02 -1.00 15 22 H 0.00 0.13 8.00 -2.39 -0.02 0.11 15 23 H 0.06 1.77 8.14 -2.39 -0.02 1.75 15 24 H 0.08 2.16 8.14 -2.39 -0.02 2.14 15 25 H 0.07 1.54 7.19 -2.39 -0.02 1.52 15 26 H 0.10 1.47 8.14 -2.39 -0.02 1.45 15 27 H 0.11 1.49 8.14 -2.38 -0.02 1.47 15 28 H 0.09 1.63 8.14 -2.39 -0.02 1.61 15 Total: -1.00 -73.51 247.64 5.00 -68.51 By element: Atomic # 1 Polarization: -3.69 SS G_CDS: 1.24 Total: -2.45 kcal Atomic # 6 Polarization: -36.37 SS G_CDS: 1.52 Total: -34.86 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: 0.29 Total: -60.73 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.02 Total: -22.66 kcal Atomic # 14 Polarization: 54.33 SS G_CDS: 2.05 Total: 56.38 kcal Atomic # 17 Polarization: -4.11 SS G_CDS: -0.07 Total: -4.19 kcal Total: -73.51 5.00 -68.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142230269.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.070 kcal (2) G-P(sol) polarization free energy of solvation -73.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds