Wall clock time and date at job start Mon Mar 30 2020 02:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 120.00140 * 2 1 4 4 H 1.48496 * 109.47059 * 239.99910 * 3 2 1 5 5 H 1.48496 * 109.47012 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47269 * 119.99596 * 3 2 1 7 7 C 1.37875 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00291 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00103 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47214 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.77805 * 305.47645 * 10 9 7 12 12 C 1.53236 * 109.62292 * 184.99868 * 10 9 7 13 13 C 1.52963 * 109.40035 * 185.65928 * 12 10 9 14 14 C 1.52953 * 109.81780 * 63.60102 * 13 12 10 15 15 C 1.53236 * 109.41342 * 296.39048 * 14 13 12 16 16 H 1.08992 * 109.62559 * 294.92227 * 15 14 13 17 17 Cl 1.80300 * 109.62296 * 174.35007 * 15 14 13 18 18 C 1.51268 * 109.62563 * 65.95453 * 10 9 7 19 19 O 1.20762 * 120.84817 * 351.06488 * 18 10 9 20 20 H 0.97003 * 120.00147 * 0.02562 * 1 2 3 21 21 H 1.09006 * 109.46957 * 59.99502 * 9 7 2 22 22 H 1.09004 * 109.46971 * 299.99861 * 9 7 2 23 23 H 1.08994 * 109.48064 * 65.67846 * 12 10 9 24 24 H 1.08994 * 109.49461 * 305.64553 * 12 10 9 25 25 H 1.08995 * 109.41079 * 303.48687 * 13 12 10 26 26 H 1.09004 * 109.34806 * 183.67192 * 13 12 10 27 27 H 1.09002 * 109.48451 * 56.37994 * 14 13 12 28 28 H 1.08999 * 109.48225 * 176.40883 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9374 -3.5556 -0.8347 12 6 1.4868 -4.9876 -0.1252 13 6 2.4698 -6.1509 0.0168 14 6 3.0885 -6.1392 1.4156 15 6 3.9075 -4.8571 1.5995 16 1 4.7534 -4.8613 0.9123 17 17 4.5021 -4.7570 3.2987 18 6 3.0167 -3.6710 1.3017 19 8 2.9239 -2.7547 2.0829 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 1.0023 -5.0380 -1.1002 24 1 0.7327 -5.0510 0.6592 25 1 3.2584 -6.0520 -0.7291 26 1 1.9410 -7.0915 -0.1376 27 1 2.2966 -6.1752 2.1637 28 1 3.7390 -7.0059 1.5327 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000142230465.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:58 Heat of formation + Delta-G solvation = -70.532069 kcal Electronic energy + Delta-G solvation = -12823.632924 eV Core-core repulsion = 10478.555671 eV Total energy + Delta-G solvation = -2345.077253 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 216.066 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.47226 -36.10263 -35.57474 -33.32390 -31.31133 -28.81479 -26.55117 -23.25908 -21.73718 -20.73823 -18.58236 -16.24899 -15.60600 -15.49094 -14.57070 -14.43378 -14.24820 -13.40976 -12.94516 -12.38080 -12.12757 -11.91946 -11.40572 -11.15718 -11.04385 -10.94431 -10.60300 -10.49974 -10.42901 -10.27324 -10.17713 -9.46171 -9.04220 -8.61626 -8.25124 -5.92478 -3.91668 2.26525 2.67554 3.39665 3.43483 3.48175 4.33357 4.53900 4.72980 4.88797 5.10845 5.21827 5.34903 5.44869 5.71122 5.78975 5.82287 5.95957 6.07630 6.13929 6.41756 6.59159 6.81474 7.59495 7.73632 8.02186 8.22662 8.43515 9.08588 9.70062 11.19443 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.036268 B = 0.009534 C = 0.007995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.852433 B = 2936.235137 C = 3501.566035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.502 4.502 8 H 0.050 0.950 9 C 0.035 3.965 10 C -0.121 4.121 11 H 0.092 0.908 12 C -0.114 4.114 13 C -0.122 4.122 14 C -0.114 4.114 15 C -0.056 4.056 16 H 0.120 0.880 17 Cl -0.168 7.168 18 C 0.348 3.652 19 O -0.391 6.391 20 H 0.260 0.740 21 H 0.025 0.975 22 H 0.022 0.978 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.960 -13.244 -0.017 14.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.540 4.540 8 H 0.069 0.931 9 C -0.002 4.002 10 C -0.141 4.141 11 H 0.110 0.890 12 C -0.152 4.152 13 C -0.160 4.160 14 C -0.152 4.152 15 C -0.101 4.101 16 H 0.138 0.862 17 Cl -0.141 7.141 18 C 0.216 3.784 19 O -0.258 6.258 20 H 0.069 0.931 21 H 0.043 0.957 22 H 0.040 0.960 23 H 0.092 0.908 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.801 -12.596 0.564 13.878 hybrid contribution 0.640 0.873 0.070 1.085 sum 6.440 -11.723 0.634 13.390 Atomic orbital electron populations 1.69933 1.05971 1.26565 1.51459 1.24917 0.94789 0.99067 0.95504 0.86690 0.79640 0.83336 0.78560 1.20398 1.21359 1.20218 1.21007 0.92611 0.90746 1.49672 0.93137 1.19044 0.93068 0.90220 0.97837 1.22023 0.99342 0.97713 0.94975 0.88978 1.21686 0.97844 0.92762 1.02907 1.21616 0.99336 0.99442 0.95594 1.21850 0.99569 0.94748 0.98990 1.25220 1.00339 0.99804 0.84750 0.86181 1.98713 1.89999 1.98864 1.26530 1.24831 0.80069 0.84611 0.88858 1.90484 1.54738 1.33875 1.46663 0.93078 0.95674 0.95957 0.90751 0.91594 0.91366 0.90987 0.90438 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.29 55.43 0.74 -26.77 15 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 3 Si 0.89 22.57 29.54 -169.99 -5.02 17.54 15 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 15 6 H -0.28 -7.08 7.11 56.52 0.40 -6.68 15 7 C -0.50 -14.34 7.68 -34.44 -0.26 -14.61 15 8 H 0.05 1.43 7.56 -52.48 -0.40 1.03 15 9 C 0.04 0.89 4.14 -27.88 -0.12 0.77 15 10 C -0.12 -2.30 2.42 -91.37 -0.22 -2.52 15 11 H 0.09 1.64 8.14 -51.93 -0.42 1.22 15 12 C -0.11 -1.66 5.23 -26.63 -0.14 -1.80 15 13 C -0.12 -1.33 5.81 -26.77 -0.16 -1.48 15 14 C -0.11 -1.31 5.35 -26.63 -0.14 -1.45 15 15 C -0.06 -0.82 3.51 -27.47 -0.10 -0.91 15 16 H 0.12 1.46 8.14 -51.93 -0.42 1.04 15 17 Cl -0.17 -2.66 27.95 -51.86 -1.45 -4.11 15 18 C 0.35 6.72 6.24 -28.46 -0.18 6.54 15 19 O -0.39 -9.46 14.79 6.00 0.09 -9.37 15 20 H 0.26 7.55 8.31 -40.82 -0.34 7.21 15 21 H 0.03 0.65 8.14 -51.93 -0.42 0.23 15 22 H 0.02 0.62 8.09 -51.93 -0.42 0.20 15 23 H 0.07 1.01 8.14 -51.93 -0.42 0.59 15 24 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 25 H 0.07 0.67 8.14 -51.93 -0.42 0.24 15 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 15 27 H 0.08 0.95 8.14 -51.93 -0.42 0.52 15 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 15 LS Contribution 249.96 15.07 3.77 3.77 Total: -1.00 -32.26 249.96 -7.04 -39.30 By element: Atomic # 1 Polarization: -2.74 SS G_CDS: -3.76 Total: -6.50 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -1.41 Total: -13.86 kcal Atomic # 7 Polarization: -27.50 SS G_CDS: 0.74 Total: -26.77 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Atomic # 17 Polarization: -2.66 SS G_CDS: -1.45 Total: -4.11 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -32.26 -7.04 -39.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142230465.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.232 kcal (2) G-P(sol) polarization free energy of solvation -32.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds