Wall clock time and date at job start Mon Mar 30 2020 02:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00107 * 2 1 4 4 H 1.48504 * 109.47350 * 269.99820 * 3 2 1 5 5 H 1.48498 * 109.47515 * 30.00090 * 3 2 1 6 6 H 1.48501 * 109.47278 * 150.00152 * 3 2 1 7 7 C 1.37871 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00668 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99857 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46904 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.62419 * 55.38257 * 10 9 7 12 12 C 1.53226 * 109.62154 * 175.95680 * 10 9 7 13 13 C 1.52991 * 109.41203 * 174.34505 * 12 10 9 14 14 C 1.52965 * 109.79829 * 296.40969 * 13 12 10 15 15 C 1.53229 * 109.41314 * 63.59014 * 14 13 12 16 16 H 1.09005 * 109.62497 * 185.64969 * 15 14 13 17 17 Cl 1.80300 * 109.62608 * 65.08223 * 15 14 13 18 18 C 1.51260 * 108.53957 * 305.36317 * 15 14 13 19 19 O 1.20765 * 120.85331 * 231.33096 * 18 15 14 20 20 H 0.97006 * 119.99351 * 359.97438 * 1 2 3 21 21 H 1.08992 * 109.47079 * 60.00152 * 9 7 2 22 22 H 1.08995 * 109.47057 * 299.99715 * 9 7 2 23 23 H 1.09005 * 109.48354 * 294.32096 * 12 10 9 24 24 H 1.08997 * 109.48816 * 54.35159 * 12 10 9 25 25 H 1.08998 * 109.43337 * 176.30507 * 13 12 10 26 26 H 1.09001 * 109.40750 * 56.50243 * 13 12 10 27 27 H 1.09002 * 109.48383 * 303.60234 * 14 13 12 28 28 H 1.08999 * 109.47882 * 183.57597 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0015 11 1 2.9271 -3.5609 0.8458 12 6 1.4854 -4.9887 0.1044 13 6 2.4700 -6.1510 -0.0379 14 6 3.1054 -6.1244 -1.4291 15 6 3.9261 -4.8404 -1.5897 16 1 4.2979 -4.7690 -2.6119 17 17 5.3120 -4.8593 -0.4365 18 6 3.0321 -3.6576 -1.2904 19 8 2.9489 -2.7330 -2.0629 20 1 -0.4849 0.8402 0.0004 21 1 0.6240 -2.5575 -0.8880 22 1 0.6247 -2.5563 0.8920 23 1 0.9892 -5.0493 1.0731 24 1 0.7407 -5.0438 -0.6896 25 1 1.9407 -7.0937 0.1006 26 1 3.2497 -6.0598 0.7183 27 1 2.3225 -6.1526 -2.1870 28 1 3.7574 -6.9898 -1.5475 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000142230937.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:03 Heat of formation + Delta-G solvation = -91.089039 kcal Electronic energy + Delta-G solvation = -12893.496686 eV Core-core repulsion = 10547.528017 eV Total energy + Delta-G solvation = -2345.968670 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 216.066 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.04054 -37.67801 -36.70094 -35.29161 -33.07560 -30.19980 -28.33104 -25.03562 -23.26111 -22.04338 -19.91436 -18.45223 -17.09942 -16.93566 -16.47981 -15.85373 -15.67563 -14.88080 -14.14070 -14.07054 -13.89287 -13.52140 -13.12742 -12.84430 -12.65842 -12.47019 -12.20390 -12.09945 -12.00981 -11.57995 -11.47432 -11.23791 -10.93408 -10.59166 -10.08962 -8.18501 -6.23893 0.52122 1.34214 1.37002 1.46487 1.64214 2.40461 2.91062 3.15905 3.62173 3.71559 4.00931 4.15867 4.34278 4.44417 4.51022 4.79916 4.91053 4.99614 5.11878 5.24388 5.27841 5.41764 5.47945 5.65197 5.81007 6.23268 6.59675 6.85989 7.41249 8.93754 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.040219 B = 0.009582 C = 0.008494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.024321 B = 2921.402499 C = 3295.634707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.953 3.047 4 H -0.281 1.281 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.512 4.512 8 H 0.044 0.956 9 C 0.039 3.961 10 C -0.126 4.126 11 H 0.097 0.903 12 C -0.107 4.107 13 C -0.121 4.121 14 C -0.113 4.113 15 C -0.044 4.044 16 H 0.127 0.873 17 Cl -0.155 7.155 18 C 0.357 3.643 19 O -0.457 6.457 20 H 0.262 0.738 21 H -0.013 1.013 22 H 0.007 0.993 23 H 0.078 0.922 24 H 0.060 0.940 25 H 0.102 0.898 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.109 -14.971 -0.932 16.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.778 3.222 4 H -0.207 1.207 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.550 4.550 8 H 0.063 0.937 9 C 0.002 3.998 10 C -0.145 4.145 11 H 0.115 0.885 12 C -0.144 4.144 13 C -0.158 4.158 14 C -0.151 4.151 15 C -0.089 4.089 16 H 0.145 0.855 17 Cl -0.129 7.129 18 C 0.231 3.769 19 O -0.329 6.329 20 H 0.070 0.930 21 H 0.006 0.994 22 H 0.025 0.975 23 H 0.097 0.903 24 H 0.078 0.922 25 H 0.120 0.880 26 H 0.093 0.907 27 H 0.111 0.889 28 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.028 -14.364 -1.257 16.041 hybrid contribution 0.227 1.395 -0.015 1.414 sum 7.255 -12.969 -1.272 14.915 Atomic orbital electron populations 1.70068 1.07372 1.27383 1.52772 1.25802 0.95751 1.02820 0.95435 0.85631 0.78934 0.79512 0.78115 1.20676 1.20107 1.18984 1.21418 0.92590 0.92405 1.48595 0.93725 1.18881 0.93687 0.92116 0.95106 1.21901 0.98517 0.97753 0.96338 0.88509 1.21634 0.98037 0.91670 1.03085 1.21642 0.98821 0.98661 0.96659 1.21972 0.99553 0.94065 0.99472 1.25098 0.88798 0.98544 0.96442 0.85494 1.98719 1.48991 1.98949 1.66211 1.25263 0.79612 0.84725 0.87281 1.90446 1.58782 1.35278 1.48428 0.92971 0.99428 0.97519 0.90295 0.92162 0.87978 0.90703 0.88859 0.86849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.92 13.29 21.45 0.28 -58.63 15 2 C 0.00 -0.08 5.46 84.65 0.46 0.38 15 3 Si 0.95 47.32 29.54 68.60 2.03 49.35 15 4 H -0.28 -13.85 7.11 99.48 0.71 -13.14 15 5 H -0.28 -13.08 7.11 99.48 0.71 -12.38 15 6 H -0.27 -12.66 7.11 99.48 0.71 -11.95 15 7 C -0.51 -30.51 7.64 25.60 0.20 -30.32 15 8 H 0.04 2.65 7.50 -2.91 -0.02 2.63 15 9 C 0.04 2.09 4.16 29.85 0.12 2.21 15 10 C -0.13 -5.02 2.35 -11.28 -0.03 -5.04 15 11 H 0.10 3.81 8.14 -2.39 -0.02 3.79 15 12 C -0.11 -3.10 5.23 30.67 0.16 -2.94 15 13 C -0.12 -2.43 5.72 30.58 0.17 -2.25 15 14 C -0.11 -2.14 5.48 30.66 0.17 -1.98 15 15 C -0.04 -1.18 3.60 30.10 0.11 -1.07 15 16 H 0.13 3.06 8.14 -2.38 -0.02 3.04 15 17 Cl -0.15 -4.13 27.47 -2.72 -0.07 -4.20 15 18 C 0.36 13.88 5.75 29.46 0.17 14.05 15 19 O -0.46 -22.46 15.69 -1.47 -0.02 -22.48 15 20 H 0.26 15.52 8.31 -92.70 -0.77 14.74 15 21 H -0.01 -0.75 8.11 -2.39 -0.02 -0.77 15 22 H 0.01 0.36 8.14 -2.39 -0.02 0.34 15 23 H 0.08 2.18 8.14 -2.38 -0.02 2.17 15 24 H 0.06 1.78 8.14 -2.39 -0.02 1.76 15 25 H 0.10 1.47 8.14 -2.39 -0.02 1.45 15 26 H 0.07 1.54 7.18 -2.39 -0.02 1.52 15 27 H 0.09 1.64 8.14 -2.39 -0.02 1.62 15 28 H 0.11 1.50 8.14 -2.39 -0.02 1.48 15 Total: -1.00 -71.48 248.91 4.89 -66.60 By element: Atomic # 1 Polarization: -4.81 SS G_CDS: 1.14 Total: -3.68 kcal Atomic # 6 Polarization: -28.49 SS G_CDS: 1.54 Total: -26.95 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: 0.28 Total: -58.63 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.02 Total: -22.48 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Atomic # 17 Polarization: -4.13 SS G_CDS: -0.07 Total: -4.20 kcal Total: -71.48 4.89 -66.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142230937.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.492 kcal (2) G-P(sol) polarization free energy of solvation -71.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds