Wall clock time and date at job start Mon Mar 30 2020 02:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34318 * 124.92076 * 2 1 4 4 C 1.34959 * 110.83133 * 180.02562 * 3 2 1 5 5 C 1.38071 * 133.25055 * 179.97438 * 4 3 2 6 6 C 1.40623 * 119.63943 * 180.02562 * 5 4 3 7 7 C 1.41015 * 119.92840 * 179.97438 * 6 5 4 8 8 H 1.07997 * 119.99991 * 150.01896 * 7 6 5 9 9 C 1.39915 * 120.00075 * 330.01187 * 7 6 5 10 10 N 1.30862 * 120.00040 * 161.70855 * 9 7 6 11 11 Si 1.86800 * 119.99982 * 341.71334 * 9 7 6 12 12 H 1.48494 * 109.47459 * 95.41252 * 11 9 7 13 13 H 1.48501 * 109.47087 * 215.41761 * 11 9 7 14 14 H 1.48507 * 109.46991 * 335.41380 * 11 9 7 15 15 C 1.41215 * 120.14717 * 359.97438 * 6 5 4 16 16 C 1.35878 * 120.17302 * 0.02562 * 15 6 5 17 17 C 1.40157 * 120.04065 * 359.97438 * 16 15 6 18 18 C 1.34568 * 124.91827 * 180.02562 * 2 1 3 19 19 C 1.50704 * 126.86763 * 359.70027 * 18 2 1 20 20 H 1.08996 * 109.47172 * 269.95691 * 1 2 3 21 21 H 1.09000 * 109.46900 * 29.95929 * 1 2 3 22 22 H 1.09001 * 109.47440 * 149.95789 * 1 2 3 23 23 H 1.08005 * 120.18247 * 359.97438 * 5 4 3 24 24 H 0.97000 * 119.99793 * 179.97438 * 10 9 7 25 25 H 1.08002 * 119.91224 * 180.02562 * 15 6 5 26 26 H 1.08006 * 119.97989 * 180.02562 * 16 15 6 27 27 H 1.08998 * 109.47229 * 90.02729 * 19 18 2 28 28 H 1.09001 * 109.47356 * 210.02777 * 19 18 2 29 29 H 1.09003 * 109.47095 * 330.02972 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2758 1.1013 0.0000 4 6 3.5848 0.7728 -0.0006 5 6 4.7472 1.5179 -0.0012 6 6 5.9923 0.8642 -0.0023 7 6 7.1833 1.6192 -0.0035 8 1 8.0736 1.2242 0.4631 9 6 7.2117 2.8800 -0.6094 10 7 8.1669 3.7253 -0.3167 11 14 5.8861 3.3569 -1.8361 12 1 4.8175 4.1173 -1.1396 13 1 6.4799 4.2019 -2.9031 14 1 5.3070 2.1304 -2.4409 15 6 6.0526 -0.5467 -0.0020 16 6 4.9081 -1.2791 -0.0014 17 6 3.6631 -0.6354 -0.0003 18 6 2.2772 -1.1034 -0.0005 19 6 1.8062 -2.5349 0.0052 20 1 -0.3633 -0.0008 1.0276 21 1 -0.3633 0.8904 -0.5132 22 1 -0.3634 -0.8896 -0.5145 23 1 4.7005 2.5969 -0.0018 24 1 8.1868 4.5992 -0.7371 25 1 7.0109 -1.0448 -0.0024 26 1 4.9579 -2.3580 -0.0008 27 1 1.6887 -2.8829 -1.0211 28 1 2.5400 -3.1569 0.5179 29 1 0.8492 -2.6005 0.5228 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000143449130.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:40 Heat of formation + Delta-G solvation = -14.199301 kcal Electronic energy + Delta-G solvation = -13881.723798 eV Core-core repulsion = 11541.522167 eV Total energy + Delta-G solvation = -2340.201631 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.03359 -38.74699 -35.64942 -34.94427 -32.35875 -31.31568 -29.76530 -27.85611 -25.58817 -23.70019 -22.30673 -20.58136 -19.23789 -17.80065 -17.63705 -17.05694 -16.63978 -15.50349 -15.11090 -14.84115 -14.16253 -14.14772 -14.04616 -13.78295 -13.57106 -13.32206 -12.93065 -12.80195 -12.66993 -12.36444 -12.15533 -11.97718 -11.56315 -11.07888 -10.31712 -9.37507 -9.03717 -8.80440 -6.57371 0.30779 0.73839 1.19296 1.28556 1.37439 1.57590 2.05208 2.10382 2.50368 3.35535 3.80548 4.00824 4.18369 4.38309 4.51387 4.55696 4.69060 4.74562 4.82912 4.91538 4.94798 5.06037 5.11380 5.18283 5.24656 5.57528 5.65595 5.74262 5.92614 6.05807 6.12703 6.40856 6.64893 6.71039 8.03158 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.041537 B = 0.009870 C = 0.008397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.932064 B = 2836.339399 C = 3333.667676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.045 4.045 3 O -0.229 6.229 4 C 0.073 3.927 5 C -0.279 4.279 6 C 0.098 3.902 7 C -0.466 4.466 8 H 0.077 0.923 9 C 0.059 3.941 10 N -0.829 5.829 11 Si 0.959 3.041 12 H -0.273 1.273 13 H -0.266 1.266 14 H -0.263 1.263 15 C -0.204 4.204 16 C -0.041 4.041 17 C -0.243 4.243 18 C -0.166 4.166 19 C -0.070 4.070 20 H 0.092 0.908 21 H 0.076 0.924 22 H 0.111 0.889 23 H 0.094 0.906 24 H 0.298 0.702 25 H 0.127 0.873 26 H 0.142 0.858 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.406 -8.081 -1.507 14.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.090 4.090 3 O -0.133 6.133 4 C 0.026 3.974 5 C -0.299 4.299 6 C 0.095 3.905 7 C -0.494 4.494 8 H 0.095 0.905 9 C -0.159 4.159 10 N -0.454 5.454 11 Si 0.784 3.216 12 H -0.199 1.199 13 H -0.192 1.192 14 H -0.188 1.188 15 C -0.223 4.223 16 C -0.059 4.059 17 C -0.245 4.245 18 C -0.167 4.167 19 C -0.127 4.127 20 H 0.110 0.890 21 H 0.094 0.906 22 H 0.129 0.871 23 H 0.112 0.888 24 H 0.109 0.891 25 H 0.145 0.855 26 H 0.159 0.841 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.306 -7.583 -1.510 14.534 hybrid contribution 0.300 0.850 -0.287 0.946 sum -12.006 -6.733 -1.797 13.882 Atomic orbital electron populations 1.20436 0.82025 1.04956 1.04416 1.22905 0.95330 0.83001 1.07806 1.83817 1.15598 1.35873 1.77992 1.19619 0.82306 0.94834 1.00640 1.19698 0.89123 0.97485 1.23624 1.17569 0.90921 0.93146 0.88839 1.19452 0.97200 1.00127 1.32639 0.90472 1.26671 0.97413 0.94612 0.97165 1.69702 1.32254 1.07192 1.36301 0.85554 0.78163 0.79156 0.78703 1.19902 1.19207 1.18757 1.21051 0.98349 0.92945 1.09957 1.20223 0.89656 0.99673 0.96367 1.19885 0.94903 0.92153 1.17529 1.21226 0.89889 0.97632 1.07985 1.20193 1.01738 0.87969 1.02789 0.88965 0.90558 0.87056 0.88783 0.89109 0.85520 0.84072 0.90494 0.91388 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.37 10.00 71.23 0.71 -0.66 15 2 C -0.04 -1.59 7.24 24.84 0.18 -1.41 15 3 O -0.23 -10.47 10.59 -9.18 -0.10 -10.57 15 4 C 0.07 3.65 7.38 22.92 0.17 3.82 15 5 C -0.28 -14.93 7.16 22.81 0.16 -14.77 15 6 C 0.10 5.22 5.10 -21.29 -0.11 5.11 15 7 C -0.47 -26.08 9.53 23.36 0.22 -25.86 15 8 H 0.08 4.47 8.06 -2.91 -0.02 4.45 15 9 C 0.06 3.19 5.39 85.24 0.46 3.65 15 10 N -0.83 -44.99 13.93 21.82 0.30 -44.68 15 11 Si 0.96 45.45 24.51 68.60 1.68 47.13 15 12 H -0.27 -12.92 6.70 99.48 0.67 -12.25 15 13 H -0.27 -11.41 7.11 99.48 0.71 -10.70 15 14 H -0.26 -13.14 6.87 99.48 0.68 -12.46 15 15 C -0.20 -9.47 9.71 22.45 0.22 -9.25 15 16 C -0.04 -1.72 10.03 22.19 0.22 -1.50 15 17 C -0.24 -10.81 6.39 -20.04 -0.13 -10.94 15 18 C -0.17 -5.91 6.35 -18.61 -0.12 -6.03 15 19 C -0.07 -1.67 9.98 71.24 0.71 -0.96 15 20 H 0.09 1.69 8.14 -2.39 -0.02 1.67 15 21 H 0.08 1.59 8.14 -2.39 -0.02 1.57 15 22 H 0.11 1.77 7.70 -2.39 -0.02 1.75 15 23 H 0.09 5.13 4.72 -2.91 -0.01 5.11 15 24 H 0.30 14.49 8.30 -92.71 -0.77 13.72 15 25 H 0.13 5.30 8.06 -2.91 -0.02 5.28 15 26 H 0.14 4.67 8.06 -2.91 -0.02 4.65 15 27 H 0.08 1.60 8.14 -2.39 -0.02 1.58 15 28 H 0.07 1.55 8.14 -2.39 -0.02 1.53 15 29 H 0.09 1.58 7.74 -2.39 -0.02 1.56 15 Total: -1.00 -65.14 249.18 5.68 -59.45 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: 1.09 Total: 7.46 kcal Atomic # 6 Polarization: -61.49 SS G_CDS: 2.70 Total: -58.79 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.30 Total: -44.68 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -0.10 Total: -10.57 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.68 Total: 47.13 kcal Total: -65.14 5.68 -59.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000143449130.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.255 kcal (2) G-P(sol) polarization free energy of solvation -65.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds