Wall clock time and date at job start Mon Mar 30 2020 02:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30524 * 1 3 3 Si 1.86800 * 120.00116 * 2 1 4 4 H 1.48499 * 109.46908 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47003 * 299.99316 * 3 2 1 6 6 H 1.48495 * 109.47386 * 59.99800 * 3 2 1 7 7 C 1.40459 * 119.99737 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00137 * 180.02562 * 7 2 1 9 9 C 1.41028 * 120.00127 * 0.02562 * 7 2 1 10 10 O 1.21434 * 119.99733 * 359.97438 * 9 7 2 11 11 C 1.50702 * 119.99807 * 179.97438 * 9 7 2 12 12 H 1.08999 * 115.55393 * 355.72682 * 11 9 7 13 13 C 1.53006 * 117.49542 * 141.39148 * 11 9 7 14 14 C 1.52997 * 117.49714 * 210.01082 * 11 9 7 15 15 H 1.09002 * 117.49884 * 0.02562 * 14 11 9 16 16 C 1.50702 * 117.49669 * 145.02541 * 14 11 9 17 17 C 1.38232 * 120.00213 * 59.74314 * 16 14 11 18 18 C 1.38237 * 120.00190 * 179.79029 * 17 16 14 19 19 C 1.38234 * 119.99903 * 0.43744 * 18 17 16 20 20 C 1.38238 * 120.00026 * 359.81452 * 19 18 17 21 21 C 1.38238 * 119.99939 * 359.97438 * 20 19 18 22 22 H 0.96998 * 119.99244 * 0.02562 * 1 2 3 23 23 H 1.08990 * 117.50086 * 214.97802 * 13 11 9 24 24 H 1.09004 * 117.49623 * 0.02562 * 13 11 9 25 25 H 1.07999 * 119.99690 * 359.97438 * 17 16 14 26 26 H 1.07996 * 119.99810 * 180.27384 * 18 17 16 27 27 H 1.07999 * 120.00216 * 179.83513 * 19 18 17 28 28 H 1.07996 * 119.99894 * 179.97438 * 20 19 18 29 29 H 1.07997 * 119.99840 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 3.6992 1.3463 0.0006 5 1 1.8807 2.3963 -1.2126 6 1 1.8806 2.3965 1.2124 7 6 2.0075 -1.2164 0.0005 8 1 3.0875 -1.2165 0.0010 9 6 1.3023 -2.4378 0.0005 10 8 0.0880 -2.4377 0.0005 11 6 2.0558 -3.7429 0.0005 12 1 3.1402 -3.6597 -0.0727 13 6 1.4905 -4.8849 0.8475 14 6 1.3913 -4.9422 -0.6782 15 1 0.4093 -4.7872 -1.1252 16 6 2.2861 -5.9185 -1.3975 17 6 3.2793 -6.5853 -0.7050 18 6 4.0973 -7.4841 -1.3639 19 6 3.9278 -7.7093 -2.7172 20 6 2.9379 -7.0386 -3.4108 21 6 2.1171 -6.1430 -2.7510 22 1 -0.4849 0.8401 -0.0004 23 1 2.2029 -5.5533 1.3309 24 1 0.5734 -4.6923 1.4042 25 1 3.4144 -6.4063 0.3515 26 1 4.8704 -8.0083 -0.8218 27 1 4.5686 -8.4095 -3.2325 28 1 2.8058 -7.2142 -4.4682 29 1 1.3441 -5.6188 -3.2931 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000145728051.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:45 Heat of formation + Delta-G solvation = -0.657858 kcal Electronic energy + Delta-G solvation = -13386.717764 eV Core-core repulsion = 11047.103334 eV Total energy + Delta-G solvation = -2339.614430 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.33396 -37.38172 -34.92681 -32.55573 -30.71650 -30.12762 -27.23785 -23.55738 -22.95573 -22.02920 -19.99420 -18.72935 -16.96407 -16.29814 -15.44187 -14.82455 -14.61305 -14.02704 -13.56279 -13.19519 -12.91650 -12.61019 -12.05760 -11.65794 -11.51795 -11.22189 -11.04156 -10.93615 -10.59982 -10.35904 -10.19393 -9.88881 -9.43968 -8.90749 -8.70605 -8.18277 -7.38601 -6.24588 -4.88773 1.58447 1.62138 3.03810 3.14506 3.19641 3.85095 4.03511 4.18025 4.76830 5.03685 5.12110 5.16266 5.33349 5.46965 5.66593 5.77132 5.81619 5.87505 6.13558 6.24278 6.31948 6.35621 6.60389 6.68327 6.72157 6.83802 6.94023 7.08509 7.24431 7.26680 8.11339 8.82960 8.91191 10.35368 10.59147 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.045526 B = 0.006475 C = 0.006265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.891197 B = 4323.383146 C = 4468.557135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.081 3.919 3 Si 0.906 3.094 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.070 0.930 9 C 0.386 3.614 10 O -0.545 6.545 11 C -0.160 4.160 12 H 0.096 0.904 13 C -0.160 4.160 14 C -0.116 4.116 15 H 0.114 0.886 16 C -0.031 4.031 17 C -0.125 4.125 18 C -0.120 4.120 19 C -0.138 4.138 20 C -0.119 4.119 21 C -0.117 4.117 22 H 0.272 0.728 23 H 0.086 0.914 24 H 0.097 0.903 25 H 0.123 0.877 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.761 -9.780 -2.979 12.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.142 4.142 3 Si 0.730 3.270 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.088 0.912 9 C 0.281 3.719 10 O -0.435 6.435 11 C -0.180 4.180 12 H 0.114 0.886 13 C -0.197 4.197 14 C -0.134 4.134 15 H 0.132 0.868 16 C -0.031 4.031 17 C -0.143 4.143 18 C -0.138 4.138 19 C -0.156 4.156 20 C -0.137 4.137 21 C -0.135 4.135 22 H 0.083 0.917 23 H 0.105 0.895 24 H 0.116 0.884 25 H 0.140 0.860 26 H 0.135 0.865 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.006 -9.734 -2.978 11.819 hybrid contribution 0.697 0.767 -0.041 1.037 sum 6.703 -8.967 -3.019 11.595 Atomic orbital electron populations 1.69971 1.07520 1.27830 1.31494 1.26033 0.94605 1.00980 0.92552 0.86337 0.80884 0.81350 0.78465 1.18412 1.19884 1.19886 1.20787 0.94907 0.91688 1.48318 0.91212 1.18827 0.88422 0.86360 0.78279 1.90394 1.15421 1.88383 1.49257 1.23418 0.99877 0.92690 1.01975 0.88556 1.22895 1.03170 1.01501 0.92093 1.21013 0.99789 0.98350 0.94278 0.86778 1.19410 0.95016 0.95137 0.93549 1.21108 0.95821 0.97152 1.00239 1.21066 0.99373 0.98606 0.94730 1.21036 0.99037 1.00891 0.94657 1.21085 0.95992 0.97095 0.99567 1.21039 1.00021 0.98385 0.94036 0.91680 0.89532 0.88429 0.85956 0.86483 0.86636 0.86399 0.85999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.56 11.72 55.57 0.65 -20.91 15 2 C 0.08 2.23 5.50 -17.27 -0.10 2.13 15 3 Si 0.91 19.63 29.56 -169.99 -5.03 14.60 15 4 H -0.26 -5.48 7.11 56.52 0.40 -5.08 15 5 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 15 7 C -0.53 -14.81 9.22 -37.69 -0.35 -15.16 15 8 H 0.07 1.83 7.85 -52.49 -0.41 1.41 15 9 C 0.39 10.95 6.66 -33.25 -0.22 10.73 15 10 O -0.55 -17.29 14.99 5.42 0.08 -17.21 15 11 C -0.16 -3.65 5.69 -91.77 -0.52 -4.17 15 12 H 0.10 2.07 8.14 -51.93 -0.42 1.65 15 13 C -0.16 -3.14 9.42 -26.73 -0.25 -3.39 15 14 C -0.12 -2.35 5.57 -91.77 -0.51 -2.86 15 15 H 0.11 2.49 7.98 -51.93 -0.41 2.08 15 16 C -0.03 -0.54 5.61 -104.62 -0.59 -1.13 15 17 C -0.13 -1.93 9.29 -39.58 -0.37 -2.30 15 18 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 15 19 C -0.14 -1.75 10.05 -39.58 -0.40 -2.15 15 20 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 15 21 C -0.12 -1.86 9.74 -39.58 -0.39 -2.24 15 22 H 0.27 7.09 8.29 -40.82 -0.34 6.76 15 23 H 0.09 1.42 6.18 -51.93 -0.32 1.10 15 24 H 0.10 2.04 8.13 -51.93 -0.42 1.62 15 25 H 0.12 1.76 6.03 -52.49 -0.32 1.44 15 26 H 0.12 1.24 8.06 -52.49 -0.42 0.82 15 27 H 0.12 1.15 8.06 -52.49 -0.42 0.72 15 28 H 0.12 1.29 8.06 -52.49 -0.42 0.86 15 29 H 0.12 1.86 8.06 -52.49 -0.42 1.44 15 LS Contribution 259.28 15.07 3.91 3.91 Total: -1.00 -32.08 259.28 -8.00 -40.08 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -3.13 Total: 4.05 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -4.48 Total: -24.53 kcal Atomic # 7 Polarization: -21.56 SS G_CDS: 0.65 Total: -20.91 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: 0.08 Total: -17.21 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.60 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.08 -8.00 -40.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000145728051.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.423 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds