Wall clock time and date at job start Mon Mar 30 2020 02:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46618 * 2 1 4 4 C 1.50693 * 109.47659 * 120.00286 * 2 1 3 5 5 H 1.08000 * 119.99935 * 119.99429 * 4 2 1 6 6 C 1.37880 * 119.99866 * 300.00534 * 4 2 1 7 7 N 1.31514 * 119.99460 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 120.00216 * 359.97438 * 6 4 2 9 9 H 1.48507 * 109.46897 * 90.00292 * 8 6 4 10 10 H 1.48498 * 109.47185 * 210.00680 * 8 6 4 11 11 H 1.48499 * 109.46966 * 330.00783 * 8 6 4 12 12 N 1.46498 * 109.46811 * 240.00840 * 2 1 3 13 13 C 1.34851 * 126.26896 * 299.96920 * 12 2 1 14 14 N 1.30405 * 109.74094 * 179.77149 * 13 12 2 15 15 C 1.34559 * 109.54837 * 0.41661 * 14 13 12 16 16 C 1.43205 * 126.40451 * 179.85944 * 15 14 13 17 17 N 6.08066 * 118.17502 * 259.25612 * 2 1 3 18 18 C 1.37445 * 126.27449 * 119.99846 * 12 2 1 19 19 C 1.43199 * 126.96736 * 359.97438 * 18 12 2 20 20 N 3.88430 * 124.37759 * 314.52916 * 2 1 3 21 21 H 1.09001 * 109.46901 * 299.99585 * 1 2 3 22 22 H 1.08999 * 109.47616 * 59.99743 * 1 2 3 23 23 H 1.08997 * 109.47072 * 179.97438 * 1 2 3 24 24 H 0.97011 * 119.99594 * 179.97438 * 7 6 4 25 25 H 1.07992 * 125.12738 * 0.02562 * 13 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2303 5 1 2.6533 -1.5885 1.1311 6 6 1.6993 -0.2395 2.4827 7 7 2.1375 -0.8598 3.5563 8 14 0.6258 1.2796 2.6542 9 1 -0.8021 0.8740 2.6995 10 1 0.9772 1.9951 3.9071 11 1 0.8489 2.1771 1.4924 12 7 2.0183 -0.6904 -1.1963 13 6 1.7721 -1.9726 -1.5337 14 7 2.3595 -2.2512 -2.6641 15 6 3.0207 -1.1663 -3.1072 16 6 3.7905 -1.0731 -4.3112 17 7 4.4011 -0.9992 -5.2662 18 6 2.8116 -0.1503 -2.1801 19 6 3.3200 1.1872 -2.2389 20 7 3.7233 2.2482 -2.2854 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 1.9034 -0.5283 4.4375 25 1 1.1749 -2.6633 -0.9569 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164671582.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:05 Heat of formation + Delta-G solvation = 110.006867 kcal Electronic energy + Delta-G solvation = -13367.091577 eV Core-core repulsion = 10961.028338 eV Total energy + Delta-G solvation = -2406.063240 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.071 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.39861 -37.91809 -37.81262 -36.88240 -34.31676 -32.02605 -31.22147 -27.28848 -25.58218 -24.24878 -23.01398 -19.96570 -19.06484 -18.39541 -17.39546 -16.75515 -16.08705 -15.74783 -15.03799 -14.67886 -14.58901 -14.44055 -14.38381 -14.26731 -14.14526 -13.98323 -13.49334 -13.19915 -12.75327 -12.24343 -11.72049 -11.60162 -11.35701 -10.89984 -10.68274 -9.75445 -8.39777 -6.51825 -0.31322 0.98662 1.28827 1.31508 1.35078 1.38668 1.45284 1.70051 1.91241 2.23590 2.52081 2.55230 2.64473 2.94526 3.87627 3.96638 4.13860 4.30094 4.54887 4.74003 4.87480 5.00893 5.28947 5.39506 5.82130 6.07948 6.15378 6.26260 6.57768 6.61931 7.14794 8.74577 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.039555 B = 0.009096 C = 0.008320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.703732 B = 3077.568257 C = 3364.606959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.225 3.775 3 H 0.052 0.948 4 C -0.543 4.543 5 H 0.061 0.939 6 C 0.039 3.961 7 N -0.924 5.924 8 Si 0.930 3.070 9 H -0.247 1.247 10 H -0.302 1.302 11 H -0.252 1.252 12 N -0.392 5.392 13 C 0.264 3.736 14 N -0.472 5.472 15 C 0.126 3.874 16 C 0.316 3.684 17 N -0.424 5.424 18 C 0.077 3.923 19 C 0.297 3.703 20 N -0.412 5.412 21 H 0.056 0.944 22 H 0.072 0.928 23 H 0.090 0.910 24 H 0.273 0.727 25 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.148 0.202 -6.350 8.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.124 3.876 3 H 0.070 0.930 4 C -0.581 4.581 5 H 0.080 0.920 6 C -0.162 4.162 7 N -0.561 5.561 8 Si 0.756 3.244 9 H -0.172 1.172 10 H -0.230 1.230 11 H -0.176 1.176 12 N -0.068 5.068 13 C -0.020 4.020 14 N -0.189 5.189 15 C -0.013 4.013 16 C 0.000 4.000 17 N -0.102 5.102 18 C -0.050 4.050 19 C -0.019 4.019 20 N -0.090 5.090 21 H 0.075 0.925 22 H 0.091 0.909 23 H 0.109 0.891 24 H 0.082 0.918 25 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -4.738 1.225 -7.876 9.272 hybrid contribution -0.452 0.902 1.560 1.858 sum -5.190 2.127 -6.316 8.447 Atomic orbital electron populations 1.22466 0.93380 1.04633 1.01687 1.19830 0.94236 0.93309 0.80254 0.92992 1.21075 1.33696 1.14330 0.88988 0.92048 1.25511 0.96527 0.99102 0.95109 1.69959 1.45629 1.41615 0.98937 0.86162 0.80447 0.80038 0.77745 1.17180 1.22979 1.17600 1.45877 1.32758 1.11686 1.16448 1.25629 0.99701 0.84202 0.92478 1.70413 1.12222 1.24937 1.11331 1.15577 1.03378 0.90800 0.91565 1.23818 0.92107 0.93036 0.91037 1.81239 1.10303 1.07805 1.10871 1.16021 1.05654 0.88301 0.95021 1.23950 0.93272 0.90822 0.93893 1.81257 1.09477 1.10893 1.07385 0.92540 0.90929 0.89110 0.91779 0.73015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.73 8.72 71.98 0.63 -4.10 15 2 C 0.22 7.93 2.52 44.24 0.11 8.04 15 3 H 0.05 1.96 6.48 -2.39 -0.02 1.94 15 4 C -0.54 -24.32 9.09 25.60 0.23 -24.09 15 5 H 0.06 3.08 7.98 -2.91 -0.02 3.06 15 6 C 0.04 1.89 5.45 84.66 0.46 2.35 15 7 N -0.92 -49.43 13.96 21.45 0.30 -49.13 15 8 Si 0.93 36.40 24.37 68.60 1.67 38.07 15 9 H -0.25 -8.75 6.87 99.48 0.68 -8.06 15 10 H -0.30 -12.50 7.11 99.48 0.71 -11.79 15 11 H -0.25 -9.18 6.53 99.48 0.65 -8.53 15 12 N -0.39 -12.16 2.62 -500.19 -1.31 -13.47 15 13 C 0.26 7.03 11.52 180.35 2.08 9.10 15 14 N -0.47 -13.48 11.24 -191.84 -2.16 -15.64 15 15 C 0.13 3.75 6.94 40.19 0.28 4.03 15 16 C 0.32 9.64 15.65 88.33 1.38 11.02 15 17 N -0.42 -13.81 18.54 19.00 0.35 -13.46 15 18 C 0.08 2.37 6.84 39.72 0.27 2.64 15 19 C 0.30 9.76 14.82 88.33 1.31 11.07 15 20 N -0.41 -14.54 18.54 19.00 0.35 -14.19 15 21 H 0.06 1.76 3.27 -2.39 -0.01 1.75 15 22 H 0.07 1.72 8.14 -2.39 -0.02 1.70 15 23 H 0.09 2.27 7.94 -2.39 -0.02 2.25 15 24 H 0.27 13.79 8.31 -92.70 -0.77 13.01 15 25 H 0.25 5.05 8.06 -2.91 -0.02 5.03 15 Total: -1.00 -54.52 241.49 7.12 -47.40 By element: Atomic # 1 Polarization: -0.81 SS G_CDS: 1.16 Total: 0.35 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: 6.75 Total: 20.06 kcal Atomic # 7 Polarization: -103.42 SS G_CDS: -2.46 Total: -105.88 kcal Atomic # 14 Polarization: 36.40 SS G_CDS: 1.67 Total: 38.07 kcal Total: -54.52 7.12 -47.40 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164671582.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.408 kcal (2) G-P(sol) polarization free energy of solvation -54.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds