Wall clock time and date at job start Mon Mar 30 2020 02:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47457 * 2 1 4 4 C 1.52998 * 109.47116 * 120.00345 * 2 1 3 5 5 C 1.53002 * 109.46873 * 59.99701 * 4 2 1 6 6 C 1.53001 * 109.47496 * 60.00330 * 5 4 2 7 7 C 1.53008 * 109.46884 * 299.99790 * 6 5 4 8 8 H 1.08996 * 109.46819 * 300.00152 * 7 6 5 9 9 S 1.81401 * 109.47105 * 179.97438 * 7 6 5 10 10 O 1.42095 * 109.46809 * 305.94120 * 9 7 6 11 11 C 1.76199 * 102.99602 * 55.00000 * 9 7 6 12 12 H 1.07995 * 120.00654 * 359.97438 * 11 9 7 13 13 C 1.37880 * 119.99414 * 179.97438 * 11 9 7 14 14 N 1.31511 * 120.00327 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99951 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.47297 * 59.99744 * 15 13 11 17 17 H 1.48503 * 109.47261 * 299.99924 * 15 13 11 18 18 H 1.48500 * 109.47454 * 179.97438 * 15 13 11 19 19 C 1.53002 * 109.46882 * 59.99834 * 7 6 5 20 20 H 1.09001 * 109.47305 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47024 * 299.99822 * 1 2 3 22 22 H 1.09002 * 109.46809 * 59.99796 * 1 2 3 23 23 H 1.08996 * 109.46922 * 179.97438 * 4 2 1 24 24 H 1.08998 * 109.47037 * 299.99825 * 4 2 1 25 25 H 1.09005 * 109.46673 * 179.97438 * 5 4 2 26 26 H 1.08996 * 109.47620 * 299.99822 * 5 4 2 27 27 H 1.08993 * 109.47167 * 179.97438 * 6 5 4 28 28 H 1.09006 * 109.47127 * 59.99156 * 6 5 4 29 29 H 0.97006 * 119.99995 * 359.97438 * 14 13 11 30 30 H 1.08996 * 109.47620 * 60.00299 * 19 7 6 31 31 H 1.09005 * 109.46673 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5299 -2.1638 1.2491 6 6 2.0399 -2.8851 -0.0002 7 6 1.5299 -2.1637 -1.2494 8 1 0.4400 -2.1637 -1.2494 9 16 2.1351 -3.0184 -2.7306 10 8 3.5493 -3.1393 -2.6630 11 6 1.5836 -4.6739 -2.4860 12 1 1.0271 -4.9320 -1.5972 13 6 1.8625 -5.6399 -3.4295 14 7 2.5397 -5.3256 -4.5121 15 14 1.2785 -7.3951 -3.1699 16 1 -0.2027 -7.4135 -3.0646 17 1 1.8703 -7.9339 -1.9191 18 1 1.7029 -8.2333 -4.3200 19 6 2.0400 -0.7213 -1.2493 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 3.1300 -0.7217 1.2489 24 1 1.6767 -0.2075 2.1392 25 1 1.8937 -2.6778 2.1388 26 1 0.4400 -2.1638 1.2491 27 1 1.6769 -3.9128 0.0000 28 1 3.1300 -2.8851 -0.0002 29 1 2.8427 -4.4140 -4.6471 30 1 3.1300 -0.7212 -1.2494 31 1 1.6763 -0.2073 -2.1391 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000203526615.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:44 Heat of formation + Delta-G solvation = -106.245943 kcal Electronic energy + Delta-G solvation = -13260.728997 eV Core-core repulsion = 11051.979875 eV Total energy + Delta-G solvation = -2208.749122 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.80704 -36.02045 -34.97701 -32.91803 -31.70507 -27.83872 -27.10034 -23.60731 -23.11193 -20.70139 -19.45098 -17.94826 -16.88354 -15.96672 -15.69187 -15.61081 -15.42799 -14.76006 -14.59665 -14.04398 -13.63905 -13.36450 -13.20579 -12.72274 -12.66867 -12.48879 -12.18386 -11.99945 -11.93857 -11.83575 -11.60033 -11.13403 -10.96427 -10.92011 -10.01071 -9.11577 -8.68736 -7.01047 1.40260 1.49896 1.68812 1.75718 2.35697 2.82889 3.12628 3.64399 3.76978 3.88192 4.00599 4.28930 4.33983 4.41944 4.46428 4.59476 4.69614 4.81531 4.91453 5.02414 5.05881 5.08289 5.18720 5.21241 5.32897 5.39506 5.47324 5.65360 5.68913 6.09653 6.87018 8.29826 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.046635 B = 0.009465 C = 0.008748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.258556 B = 2957.467247 C = 3199.860750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 H 0.084 0.916 4 C -0.113 4.113 5 C -0.111 4.111 6 C -0.100 4.100 7 C -0.402 4.402 8 H 0.131 0.869 9 S 1.310 4.690 10 O -0.986 6.986 11 C -0.902 4.902 12 H 0.077 0.923 13 C 0.023 3.977 14 N -0.892 5.892 15 Si 1.110 2.890 16 H -0.243 1.243 17 H -0.283 1.283 18 H -0.273 1.273 19 C -0.090 4.090 20 H 0.054 0.946 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.040 0.960 24 H 0.084 0.916 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.042 0.958 28 H 0.016 0.984 29 H 0.265 0.735 30 H 0.029 0.971 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.863 9.573 7.352 14.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 H 0.102 0.898 4 C -0.150 4.150 5 C -0.149 4.149 6 C -0.138 4.138 7 C -0.519 4.519 8 H 0.149 0.851 9 S 1.517 4.483 10 O -0.981 6.981 11 C -1.043 5.043 12 H 0.096 0.904 13 C -0.185 4.185 14 N -0.526 5.526 15 Si 0.929 3.071 16 H -0.167 1.167 17 H -0.209 1.209 18 H -0.198 1.198 19 C -0.129 4.129 20 H 0.073 0.927 21 H 0.085 0.915 22 H 0.085 0.915 23 H 0.059 0.941 24 H 0.102 0.898 25 H 0.075 0.925 26 H 0.099 0.901 27 H 0.061 0.939 28 H 0.035 0.965 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.302 8.517 5.887 13.271 hybrid contribution 1.382 0.142 2.472 2.836 sum -6.920 8.659 8.359 13.883 Atomic orbital electron populations 1.21911 0.93682 1.02192 1.02596 1.21072 0.97299 0.98687 0.93187 0.89815 1.21565 0.99452 0.95185 0.98793 1.21558 1.01594 0.96062 0.95706 1.21349 0.97925 0.98435 0.96109 1.27454 1.08549 1.03726 1.12217 0.85083 1.67717 0.87916 0.91850 1.00850 1.92758 1.33208 1.88305 1.83825 1.28677 1.46367 1.14155 1.15074 0.90415 1.27294 0.91062 1.09570 0.90580 1.70947 1.31951 1.22409 1.27259 0.83100 0.78272 0.69343 0.76411 1.16668 1.20916 1.19778 1.21272 0.98646 0.92634 1.00329 0.92676 0.91489 0.91455 0.94115 0.89764 0.92504 0.90087 0.93895 0.96491 0.92402 0.95162 0.89202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 8.50 71.98 0.61 -2.38 16 2 C -0.08 -2.06 3.20 -10.79 -0.03 -2.09 16 3 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 4 C -0.11 -2.96 5.45 30.59 0.17 -2.80 16 5 C -0.11 -3.35 5.65 30.60 0.17 -3.18 16 6 C -0.10 -4.09 4.94 30.60 0.15 -3.94 16 7 C -0.40 -15.25 2.42 30.60 0.07 -15.18 16 8 H 0.13 4.26 6.43 -2.39 -0.02 4.25 16 9 S 1.31 64.38 11.78 -56.49 -0.67 63.71 16 10 O -0.99 -62.27 17.24 -148.98 -2.57 -64.84 16 11 C -0.90 -50.03 8.74 67.73 0.59 -49.44 16 12 H 0.08 4.16 6.66 -2.91 -0.02 4.14 16 13 C 0.02 1.30 5.46 84.66 0.46 1.77 16 14 N -0.89 -54.56 13.65 21.45 0.29 -54.26 16 15 Si 1.11 48.94 29.90 68.60 2.05 50.99 16 16 H -0.24 -9.29 7.11 99.48 0.71 -8.58 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 19 C -0.09 -2.90 4.74 30.60 0.14 -2.76 16 20 H 0.05 1.23 4.81 -2.39 -0.01 1.22 16 21 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.08 2.16 6.43 -2.39 -0.02 2.14 16 27 H 0.04 1.91 6.51 -2.39 -0.02 1.90 16 28 H 0.02 0.79 8.10 -2.38 -0.02 0.77 16 29 H 0.26 16.38 6.72 -92.70 -0.62 15.75 16 30 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 Total: -1.00 -76.15 253.77 2.70 -73.45 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 1.25 Total: 10.94 kcal Atomic # 6 Polarization: -82.34 SS G_CDS: 2.34 Total: -79.99 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: 0.29 Total: -54.26 kcal Atomic # 8 Polarization: -62.27 SS G_CDS: -2.57 Total: -64.84 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 2.05 Total: 50.99 kcal Atomic # 16 Polarization: 64.38 SS G_CDS: -0.67 Total: 63.71 kcal Total: -76.15 2.70 -73.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203526615.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.792 kcal (2) G-P(sol) polarization free energy of solvation -76.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds