Wall clock time and date at job start Mon Mar 30 2020 02:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46884 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99248 * 2 1 3 5 5 C 1.53000 * 109.47060 * 300.00449 * 4 2 1 6 6 C 1.53002 * 109.47233 * 299.99657 * 5 4 2 7 7 C 1.52997 * 109.46817 * 60.00194 * 6 5 4 8 8 H 1.09002 * 109.47153 * 60.00231 * 7 6 5 9 9 S 1.81399 * 109.47065 * 180.02562 * 7 6 5 10 10 O 1.42109 * 109.46957 * 195.94529 * 9 7 6 11 11 C 1.76198 * 102.99855 * 304.99941 * 9 7 6 12 12 H 1.07997 * 120.00043 * 0.02562 * 11 9 7 13 13 C 1.37882 * 119.99749 * 180.02562 * 11 9 7 14 14 N 1.31513 * 120.00187 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99812 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46975 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47049 * 119.99851 * 15 13 11 18 18 H 1.48497 * 109.47388 * 239.99763 * 15 13 11 19 19 C 1.52999 * 109.46623 * 119.99312 * 2 1 3 20 20 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47050 * 300.00592 * 1 2 3 22 22 H 1.09001 * 109.47002 * 60.00326 * 1 2 3 23 23 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 24 24 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 25 25 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 26 26 H 1.09004 * 109.46724 * 180.02562 * 5 4 2 27 27 H 1.08993 * 109.47662 * 180.02562 * 6 5 4 28 28 H 1.09002 * 109.47075 * 300.00932 * 6 5 4 29 29 H 0.97004 * 119.99770 * 180.02562 * 14 13 11 30 30 H 1.09000 * 109.47486 * 299.99829 * 19 2 1 31 31 H 1.09002 * 109.46716 * 179.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5300 -2.1639 -1.2490 6 6 2.0399 -2.8851 0.0003 7 6 1.5299 -2.1637 1.2495 8 1 0.4399 -2.1636 1.2494 9 16 2.1351 -3.0182 2.7307 10 8 1.3853 -2.5951 3.8612 11 6 1.5836 -4.6737 2.4862 12 1 1.0272 -4.9318 1.5974 13 6 1.8626 -5.6397 3.4298 14 7 2.5407 -5.3255 4.5120 15 14 1.2785 -7.3950 3.1704 16 1 0.5445 -7.4872 1.8827 17 1 2.4502 -8.3068 3.1381 18 1 0.3772 -7.7864 4.2837 19 6 2.0399 -0.7211 1.2494 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 3.1301 -0.7218 -1.2489 24 1 1.6767 -0.2076 -2.1392 25 1 0.4400 -2.1638 -1.2490 26 1 1.8937 -2.6779 -2.1387 27 1 1.6770 -3.9128 0.0003 28 1 3.1299 -2.8850 0.0004 29 1 2.7372 -6.0051 5.1756 30 1 1.6766 -0.2072 2.1393 31 1 3.1300 -0.7215 1.2491 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000203526617.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:46 Heat of formation + Delta-G solvation = -80.190763 kcal Electronic energy + Delta-G solvation = -13175.854349 eV Core-core repulsion = 10968.235065 eV Total energy + Delta-G solvation = -2207.619284 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.37680 -33.53237 -32.76128 -31.43962 -30.19393 -26.54925 -25.63307 -22.11322 -21.57344 -18.32376 -17.71871 -15.83962 -15.30209 -14.53461 -14.29703 -13.88243 -13.45037 -13.15705 -12.72127 -12.43082 -12.07670 -11.60544 -11.27500 -11.24597 -11.12058 -10.88361 -10.60324 -10.55483 -10.49092 -10.30343 -10.00226 -9.55650 -9.45983 -8.94744 -8.04480 -6.74607 -6.24011 -4.73106 3.12213 3.20672 3.25715 3.69602 4.21401 4.91170 5.09425 5.11609 5.26857 5.37724 5.66409 5.72419 5.74266 5.90328 6.00274 6.04476 6.13790 6.20001 6.24292 6.32114 6.35542 6.43690 6.61219 6.65200 6.68644 6.85296 6.97753 7.10646 7.54106 8.26298 9.14841 10.52959 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.045374 B = 0.009516 C = 0.008544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.949739 B = 2941.777178 C = 3276.534679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 H 0.060 0.940 4 C -0.109 4.109 5 C -0.120 4.120 6 C -0.083 4.083 7 C -0.443 4.443 8 H 0.071 0.929 9 S 1.339 4.661 10 O -0.911 6.911 11 C -0.817 4.817 12 H 0.080 0.920 13 C 0.119 3.881 14 N -0.857 5.857 15 Si 0.903 3.097 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.279 1.279 19 C -0.083 4.083 20 H 0.062 0.938 21 H 0.048 0.952 22 H 0.044 0.956 23 H 0.061 0.939 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.278 0.722 30 H 0.055 0.945 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.011 5.592 -10.230 12.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 H 0.079 0.921 4 C -0.147 4.147 5 C -0.159 4.159 6 C -0.121 4.121 7 C -0.554 4.554 8 H 0.090 0.910 9 S 1.538 4.462 10 O -0.906 6.906 11 C -0.958 4.958 12 H 0.099 0.901 13 C -0.094 4.094 14 N -0.490 5.490 15 Si 0.729 3.271 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.204 1.204 19 C -0.121 4.121 20 H 0.081 0.919 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.575 5.976 -9.296 11.615 hybrid contribution -2.794 -1.323 -0.341 3.111 sum 0.780 4.652 -9.637 10.730 Atomic orbital electron populations 1.21918 0.96064 1.02204 1.00435 1.21067 0.95576 0.98256 0.95800 0.92130 1.21511 1.00320 0.96077 0.96742 1.21612 1.00541 0.95435 0.98262 1.21076 1.00396 0.98761 0.91832 1.27976 1.06400 1.03418 1.17627 0.91002 1.68954 1.14182 0.84225 0.78856 1.92800 1.73791 1.81534 1.42440 1.27514 1.46377 1.10388 1.11527 0.90122 1.24758 0.91781 0.99978 0.92911 1.69916 1.35124 1.35415 1.08551 0.86407 0.79077 0.82786 0.78875 1.19165 1.19908 1.20415 1.21120 1.00123 0.94225 0.96664 0.91885 0.93287 0.93682 0.92061 0.93185 0.92583 0.92913 0.91195 0.91560 0.91170 0.92607 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 8.50 37.16 0.32 -1.89 16 2 C -0.09 -1.26 3.20 -90.62 -0.29 -1.55 16 3 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.11 -1.43 5.45 -26.73 -0.15 -1.58 16 5 C -0.12 -1.75 5.65 -26.73 -0.15 -1.90 16 6 C -0.08 -1.40 5.00 -26.73 -0.13 -1.54 16 7 C -0.44 -8.75 2.42 -26.73 -0.06 -8.82 16 8 H 0.07 1.57 6.43 -51.92 -0.33 1.24 16 9 S 1.34 32.86 12.50 -107.50 -1.34 31.52 16 10 O -0.91 -28.49 17.82 -35.23 -0.63 -29.12 16 11 C -0.82 -22.27 8.74 30.60 0.27 -22.00 16 12 H 0.08 2.13 6.66 -52.49 -0.35 1.78 16 13 C 0.12 3.28 5.46 -17.82 -0.10 3.19 16 14 N -0.86 -24.63 13.15 55.43 0.73 -23.90 16 15 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 C -0.08 -1.40 4.74 -26.73 -0.13 -1.53 16 20 H 0.06 1.03 4.81 -51.93 -0.25 0.78 16 21 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.85 6.43 -51.93 -0.33 0.52 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 1.29 6.51 -51.93 -0.34 0.95 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 255.89 15.07 3.86 3.86 Total: -1.00 -33.83 255.89 -7.38 -41.21 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -4.54 Total: -1.84 kcal Atomic # 6 Polarization: -37.19 SS G_CDS: -0.43 Total: -37.62 kcal Atomic # 7 Polarization: -24.63 SS G_CDS: 0.73 Total: -23.90 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.63 Total: -29.12 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 32.86 SS G_CDS: -1.34 Total: 31.52 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -33.83 -7.38 -41.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203526617.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.982 kcal (2) G-P(sol) polarization free energy of solvation -33.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds