Wall clock time and date at job start Mon Mar 30 2020 02:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46884 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99248 * 2 1 3 5 5 C 1.53000 * 109.47060 * 300.00449 * 4 2 1 6 6 C 1.53002 * 109.47233 * 299.99657 * 5 4 2 7 7 C 1.52997 * 109.46817 * 60.00194 * 6 5 4 8 8 H 1.09002 * 109.47153 * 60.00231 * 7 6 5 9 9 S 1.81399 * 109.47065 * 180.02562 * 7 6 5 10 10 O 1.42109 * 109.46957 * 195.94529 * 9 7 6 11 11 C 1.76198 * 102.99855 * 304.99941 * 9 7 6 12 12 H 1.07997 * 120.00043 * 0.02562 * 11 9 7 13 13 C 1.37882 * 119.99749 * 180.02562 * 11 9 7 14 14 N 1.31513 * 120.00187 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99812 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46975 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47049 * 119.99851 * 15 13 11 18 18 H 1.48497 * 109.47388 * 239.99763 * 15 13 11 19 19 C 1.52999 * 109.46623 * 119.99312 * 2 1 3 20 20 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47050 * 300.00592 * 1 2 3 22 22 H 1.09001 * 109.47002 * 60.00326 * 1 2 3 23 23 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 24 24 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 25 25 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 26 26 H 1.09004 * 109.46724 * 180.02562 * 5 4 2 27 27 H 1.08993 * 109.47662 * 180.02562 * 6 5 4 28 28 H 1.09002 * 109.47075 * 300.00932 * 6 5 4 29 29 H 0.97004 * 119.99770 * 180.02562 * 14 13 11 30 30 H 1.09000 * 109.47486 * 299.99829 * 19 2 1 31 31 H 1.09002 * 109.46716 * 179.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5300 -2.1639 -1.2490 6 6 2.0399 -2.8851 0.0003 7 6 1.5299 -2.1637 1.2495 8 1 0.4399 -2.1636 1.2494 9 16 2.1351 -3.0182 2.7307 10 8 1.3853 -2.5951 3.8612 11 6 1.5836 -4.6737 2.4862 12 1 1.0272 -4.9318 1.5974 13 6 1.8626 -5.6397 3.4298 14 7 2.5407 -5.3255 4.5120 15 14 1.2785 -7.3950 3.1704 16 1 0.5445 -7.4872 1.8827 17 1 2.4502 -8.3068 3.1381 18 1 0.3772 -7.7864 4.2837 19 6 2.0399 -0.7211 1.2494 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 3.1301 -0.7218 -1.2489 24 1 1.6767 -0.2076 -2.1392 25 1 0.4400 -2.1638 -1.2490 26 1 1.8937 -2.6779 -2.1387 27 1 1.6770 -3.9128 0.0003 28 1 3.1299 -2.8850 0.0004 29 1 2.7372 -6.0051 5.1756 30 1 1.6766 -0.2072 2.1393 31 1 3.1300 -0.7215 1.2491 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000203526617.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:45 Heat of formation + Delta-G solvation = -103.705647 kcal Electronic energy + Delta-G solvation = -13176.874031 eV Core-core repulsion = 10968.235065 eV Total energy + Delta-G solvation = -2208.638966 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.64898 -35.75930 -34.87943 -32.75038 -31.51831 -28.11867 -27.40100 -23.47727 -22.90284 -20.06146 -19.27812 -17.52142 -17.31941 -16.23839 -15.68834 -15.29367 -15.11397 -14.57977 -14.40957 -13.84797 -13.63326 -13.28868 -13.06624 -12.91774 -12.65021 -12.54417 -12.22186 -12.13962 -11.86439 -11.80172 -11.42852 -11.05312 -10.92745 -10.75967 -10.04116 -8.79095 -8.32641 -6.89610 1.27934 1.32321 1.45520 1.81727 2.28993 2.81570 3.34347 3.85188 3.92518 4.07998 4.13750 4.45229 4.49908 4.56858 4.58487 4.75645 4.86474 4.90382 5.01934 5.03848 5.13093 5.26169 5.32537 5.37352 5.44006 5.48529 5.55175 5.62575 5.73257 6.12830 7.01627 8.46156 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.045374 B = 0.009516 C = 0.008544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.949739 B = 2941.777178 C = 3276.534679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.085 4.085 3 H 0.086 0.914 4 C -0.105 4.105 5 C -0.117 4.117 6 C -0.085 4.085 7 C -0.419 4.419 8 H 0.043 0.957 9 S 1.349 4.651 10 O -0.988 6.988 11 C -0.840 4.840 12 H 0.080 0.920 13 C 0.063 3.937 14 N -0.892 5.892 15 Si 0.969 3.031 16 H -0.263 1.263 17 H -0.248 1.248 18 H -0.283 1.283 19 C -0.088 4.088 20 H 0.040 0.960 21 H 0.036 0.964 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.044 0.956 26 H 0.077 0.923 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.285 0.715 30 H 0.033 0.967 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.829 5.721 -12.807 14.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.104 4.104 3 H 0.105 0.895 4 C -0.143 4.143 5 C -0.156 4.156 6 C -0.123 4.123 7 C -0.535 4.535 8 H 0.062 0.938 9 S 1.554 4.446 10 O -0.983 6.983 11 C -0.980 4.980 12 H 0.099 0.901 13 C -0.146 4.146 14 N -0.526 5.526 15 Si 0.790 3.210 16 H -0.186 1.186 17 H -0.172 1.172 18 H -0.209 1.209 19 C -0.127 4.127 20 H 0.059 0.941 21 H 0.055 0.945 22 H 0.089 0.911 23 H 0.099 0.901 24 H 0.092 0.908 25 H 0.063 0.937 26 H 0.095 0.905 27 H 0.069 0.931 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.415 6.083 -11.836 14.021 hybrid contribution -3.076 -1.278 0.357 3.350 sum 1.339 4.805 -11.478 12.516 Atomic orbital electron populations 1.21941 0.96824 1.00965 1.01132 1.21100 0.94964 0.99486 0.94892 0.89528 1.21527 1.01495 0.94588 0.96642 1.21592 0.99942 0.96657 0.97391 1.21151 1.01919 0.97643 0.91626 1.27614 1.04701 1.05326 1.15864 0.93772 1.67725 1.14468 0.83303 0.79112 1.92696 1.75947 1.82732 1.46910 1.27799 1.46587 1.11823 1.11802 0.90138 1.25738 0.91745 1.04558 0.92580 1.70004 1.36059 1.37098 1.09419 0.85409 0.79283 0.77730 0.78554 1.18644 1.17195 1.20860 1.21250 1.01887 0.91888 0.97665 0.94098 0.94485 0.91139 0.90141 0.90794 0.93732 0.90469 0.93120 0.89074 0.90549 0.94777 0.88733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.24 8.50 71.98 0.61 -3.63 16 2 C -0.09 -2.19 3.20 -10.79 -0.03 -2.22 16 3 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 4 C -0.11 -2.28 5.45 30.59 0.17 -2.11 16 5 C -0.12 -3.04 5.65 30.60 0.17 -2.87 16 6 C -0.09 -2.75 5.00 30.59 0.15 -2.60 16 7 C -0.42 -16.57 2.42 30.60 0.07 -16.50 16 8 H 0.04 1.99 6.43 -2.39 -0.02 1.97 16 9 S 1.35 68.34 12.50 -56.49 -0.71 67.63 16 10 O -0.99 -64.78 17.82 -148.98 -2.65 -67.43 16 11 C -0.84 -46.73 8.74 67.74 0.59 -46.14 16 12 H 0.08 4.33 6.66 -2.91 -0.02 4.31 16 13 C 0.06 3.54 5.46 84.66 0.46 4.00 16 14 N -0.89 -52.31 13.15 21.45 0.28 -52.03 16 15 Si 0.97 42.85 29.54 68.60 2.03 44.87 16 16 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 17 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 19 C -0.09 -2.87 4.74 30.60 0.14 -2.73 16 20 H 0.04 1.31 4.81 -2.39 -0.01 1.30 16 21 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 22 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 23 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.04 1.26 6.43 -2.39 -0.02 1.24 16 26 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.05 1.83 6.51 -2.39 -0.02 1.81 16 28 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.28 15.27 8.31 -92.70 -0.77 14.50 16 30 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -75.56 255.89 2.39 -73.17 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 1.10 Total: 8.59 kcal Atomic # 6 Polarization: -77.15 SS G_CDS: 2.34 Total: -74.80 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: 0.28 Total: -52.03 kcal Atomic # 8 Polarization: -64.78 SS G_CDS: -2.65 Total: -67.43 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: 68.34 SS G_CDS: -0.71 Total: 67.63 kcal Total: -75.56 2.39 -73.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203526617.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.534 kcal (2) G-P(sol) polarization free energy of solvation -75.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds