Wall clock time and date at job start Mon Mar 30 2020 02:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.52999 * 109.47317 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47159 * 300.00546 * 5 4 2 7 7 C 1.52997 * 109.47452 * 59.99536 * 6 5 4 8 8 H 1.09002 * 109.46695 * 59.99734 * 7 6 5 9 9 S 1.81396 * 109.47360 * 180.02562 * 7 6 5 10 10 O 1.42097 * 109.47109 * 195.94709 * 9 7 6 11 11 C 1.76208 * 102.99695 * 304.99933 * 9 7 6 12 12 H 1.07991 * 120.00371 * 0.02562 * 11 9 7 13 13 C 1.37882 * 119.99572 * 179.97438 * 11 9 7 14 14 N 1.31515 * 119.99544 * 180.02562 * 13 11 9 15 15 Si 1.86793 * 119.99979 * 359.97438 * 13 11 9 16 16 H 1.48506 * 109.47267 * 90.00347 * 15 13 11 17 17 H 1.48504 * 109.47098 * 209.99994 * 15 13 11 18 18 H 1.48497 * 109.47531 * 329.99929 * 15 13 11 19 19 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 20 20 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 21 21 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 22 22 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47853 * 300.00202 * 4 2 1 24 24 H 1.09002 * 109.47153 * 60.00231 * 4 2 1 25 25 H 1.09002 * 109.46716 * 60.00091 * 5 4 2 26 26 H 1.09000 * 109.47486 * 180.02562 * 5 4 2 27 27 H 1.09001 * 109.46812 * 179.97438 * 6 5 4 28 28 H 1.09002 * 109.46935 * 299.99411 * 6 5 4 29 29 H 0.96995 * 119.99606 * 179.97438 * 14 13 11 30 30 H 1.08992 * 109.47399 * 300.00166 * 19 2 1 31 31 H 1.09004 * 109.46724 * 60.00652 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7218 1.2491 6 6 4.0795 -1.4434 -0.0002 7 6 3.5696 -0.7222 -1.2495 8 1 3.9333 0.3053 -1.2496 9 16 4.1731 -1.5782 -2.7306 10 8 4.0244 -0.7304 -3.8612 11 6 5.9178 -1.6106 -2.4862 12 1 6.3469 -1.1721 -1.5975 13 6 6.7351 -2.1970 -3.4292 14 7 8.0373 -2.2217 -3.2466 15 14 5.9928 -2.9575 -4.9653 16 1 5.9113 -1.9316 -6.0359 17 1 6.8466 -4.0833 -5.4226 18 1 4.6303 -3.4625 -4.6589 19 6 2.0401 -0.7213 -1.2492 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6766 -0.2075 2.1393 24 1 1.6766 -1.7489 1.2493 25 1 3.9336 0.3057 1.2488 26 1 3.9332 -1.2360 2.1388 27 1 5.1695 -1.4434 -0.0005 28 1 3.7158 -2.4710 0.0000 29 1 8.6123 -2.6345 -3.9098 30 1 1.6768 -1.7489 -1.2492 31 1 1.6768 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000203526619.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:47 Heat of formation + Delta-G solvation = -77.271485 kcal Electronic energy + Delta-G solvation = -13063.572103 eV Core-core repulsion = 10856.079408 eV Total energy + Delta-G solvation = -2207.492695 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.17844 -33.91125 -32.77244 -32.20534 -30.32364 -26.43927 -25.60729 -22.32542 -20.96949 -19.43145 -17.84903 -15.73632 -15.38618 -14.66440 -14.29993 -14.06754 -13.68814 -13.15981 -12.91504 -12.57327 -12.19259 -12.08713 -11.50136 -11.41795 -11.05549 -10.98080 -10.88656 -10.66367 -10.52471 -10.15197 -9.95255 -9.86725 -9.58872 -8.98429 -8.27842 -6.90590 -6.50952 -4.77395 3.04648 3.15986 3.34922 3.50082 4.11731 4.75780 4.83245 4.97327 5.12930 5.15202 5.45399 5.52215 5.72531 5.77498 5.80415 5.91489 5.93570 6.03588 6.08413 6.17102 6.22408 6.29740 6.50563 6.57144 6.58908 6.70956 6.88561 6.94995 7.73766 8.46006 9.00476 10.58013 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.050224 B = 0.009521 C = 0.008400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.369677 B = 2940.014419 C = 3332.689594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.063 0.937 4 C -0.109 4.109 5 C -0.118 4.118 6 C -0.087 4.087 7 C -0.412 4.412 8 H 0.074 0.926 9 S 1.273 4.727 10 O -0.925 6.925 11 C -0.809 4.809 12 H 0.098 0.902 13 C 0.130 3.870 14 N -0.850 5.850 15 Si 0.854 3.146 16 H -0.261 1.261 17 H -0.271 1.271 18 H -0.246 1.246 19 C -0.085 4.085 20 H 0.049 0.951 21 H 0.051 0.949 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.274 0.726 30 H 0.068 0.932 31 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.641 -2.560 7.665 14.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.081 0.919 4 C -0.147 4.147 5 C -0.157 4.157 6 C -0.125 4.125 7 C -0.526 4.526 8 H 0.093 0.907 9 S 1.476 4.524 10 O -0.919 6.919 11 C -0.951 4.951 12 H 0.116 0.884 13 C -0.084 4.084 14 N -0.483 5.483 15 Si 0.678 3.322 16 H -0.185 1.185 17 H -0.197 1.197 18 H -0.170 1.170 19 C -0.123 4.123 20 H 0.068 0.932 21 H 0.070 0.930 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.025 -2.926 6.823 14.132 hybrid contribution 1.061 1.910 -0.423 2.226 sum -10.964 -1.015 6.399 12.735 Atomic orbital electron populations 1.21845 0.95836 1.01595 1.01112 1.21130 0.94565 0.99640 0.95602 0.91868 1.21554 0.96058 1.00350 0.96730 1.21568 0.95193 1.00626 0.98265 1.21156 1.01399 0.98358 0.91630 1.27519 1.00558 1.08993 1.15564 0.90704 1.69002 0.92349 1.10300 0.80704 1.92827 1.86957 1.69589 1.42550 1.27293 1.08032 1.46510 1.13275 0.88425 1.24638 0.94248 0.92521 0.97015 1.70017 1.03500 1.39406 1.35347 0.87007 0.80429 0.79875 0.84882 1.18547 1.19682 1.17008 1.21185 0.93564 1.00531 0.97033 0.93211 0.92956 0.92658 0.92973 0.91957 0.92780 0.92475 0.90548 0.91392 0.91604 0.91378 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.19 37.16 0.34 -1.32 16 2 C -0.09 -1.24 2.72 -90.62 -0.25 -1.49 16 3 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 4 C -0.11 -1.39 5.20 -26.73 -0.14 -1.53 16 5 C -0.12 -1.70 5.92 -26.73 -0.16 -1.86 16 6 C -0.09 -1.47 5.00 -26.73 -0.13 -1.61 16 7 C -0.41 -7.98 2.69 -26.76 -0.07 -8.05 16 8 H 0.07 1.63 8.14 -51.92 -0.42 1.20 16 9 S 1.27 29.70 11.06 -107.50 -1.19 28.52 16 10 O -0.92 -26.84 16.46 -35.23 -0.58 -27.42 16 11 C -0.81 -22.54 9.30 30.60 0.28 -22.26 16 12 H 0.10 2.87 6.90 -52.49 -0.36 2.50 16 13 C 0.13 3.71 5.47 -17.82 -0.10 3.61 16 14 N -0.85 -25.10 13.96 55.43 0.77 -24.32 16 15 Si 0.85 21.16 26.71 -169.99 -4.54 16.62 16 16 H -0.26 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.25 -5.43 6.73 56.52 0.38 -5.05 16 19 C -0.08 -1.36 4.49 -26.76 -0.12 -1.48 16 20 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 1.45 6.51 -51.93 -0.34 1.11 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 258.53 15.07 3.90 3.90 Total: -1.00 -33.54 258.53 -6.91 -40.45 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -4.93 Total: -1.75 kcal Atomic # 6 Polarization: -35.64 SS G_CDS: -0.34 Total: -35.99 kcal Atomic # 7 Polarization: -25.10 SS G_CDS: 0.77 Total: -24.32 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.58 Total: -27.42 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.54 Total: 16.62 kcal Atomic # 16 Polarization: 29.70 SS G_CDS: -1.19 Total: 28.52 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -33.54 -6.91 -40.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203526619.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.822 kcal (2) G-P(sol) polarization free energy of solvation -33.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds