Wall clock time and date at job start Mon Mar 30 2020 02:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.52999 * 109.47317 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47159 * 300.00546 * 5 4 2 7 7 C 1.52997 * 109.47452 * 59.99536 * 6 5 4 8 8 H 1.09002 * 109.46695 * 59.99734 * 7 6 5 9 9 S 1.81396 * 109.47360 * 180.02562 * 7 6 5 10 10 O 1.42097 * 109.47109 * 195.94709 * 9 7 6 11 11 C 1.76208 * 102.99695 * 304.99933 * 9 7 6 12 12 H 1.07991 * 120.00371 * 0.02562 * 11 9 7 13 13 C 1.37882 * 119.99572 * 179.97438 * 11 9 7 14 14 N 1.31515 * 119.99544 * 180.02562 * 13 11 9 15 15 Si 1.86793 * 119.99979 * 359.97438 * 13 11 9 16 16 H 1.48506 * 109.47267 * 90.00347 * 15 13 11 17 17 H 1.48504 * 109.47098 * 209.99994 * 15 13 11 18 18 H 1.48497 * 109.47531 * 329.99929 * 15 13 11 19 19 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 20 20 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 21 21 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 22 22 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47853 * 300.00202 * 4 2 1 24 24 H 1.09002 * 109.47153 * 60.00231 * 4 2 1 25 25 H 1.09002 * 109.46716 * 60.00091 * 5 4 2 26 26 H 1.09000 * 109.47486 * 180.02562 * 5 4 2 27 27 H 1.09001 * 109.46812 * 179.97438 * 6 5 4 28 28 H 1.09002 * 109.46935 * 299.99411 * 6 5 4 29 29 H 0.96995 * 119.99606 * 179.97438 * 14 13 11 30 30 H 1.08992 * 109.47399 * 300.00166 * 19 2 1 31 31 H 1.09004 * 109.46724 * 60.00652 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7218 1.2491 6 6 4.0795 -1.4434 -0.0002 7 6 3.5696 -0.7222 -1.2495 8 1 3.9333 0.3053 -1.2496 9 16 4.1731 -1.5782 -2.7306 10 8 4.0244 -0.7304 -3.8612 11 6 5.9178 -1.6106 -2.4862 12 1 6.3469 -1.1721 -1.5975 13 6 6.7351 -2.1970 -3.4292 14 7 8.0373 -2.2217 -3.2466 15 14 5.9928 -2.9575 -4.9653 16 1 5.9113 -1.9316 -6.0359 17 1 6.8466 -4.0833 -5.4226 18 1 4.6303 -3.4625 -4.6589 19 6 2.0401 -0.7213 -1.2492 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6766 -0.2075 2.1393 24 1 1.6766 -1.7489 1.2493 25 1 3.9336 0.3057 1.2488 26 1 3.9332 -1.2360 2.1388 27 1 5.1695 -1.4434 -0.0005 28 1 3.7158 -2.4710 0.0000 29 1 8.6123 -2.6345 -3.9098 30 1 1.6768 -1.7489 -1.2492 31 1 1.6768 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000203526619.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:47 Heat of formation + Delta-G solvation = -100.993879 kcal Electronic energy + Delta-G solvation = -13064.600783 eV Core-core repulsion = 10856.079408 eV Total energy + Delta-G solvation = -2208.521375 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.40886 -36.07124 -34.94054 -33.41701 -31.62043 -28.29565 -27.00834 -23.65998 -22.21070 -20.67894 -19.91655 -17.77176 -17.18170 -16.21412 -15.63349 -15.47381 -15.10327 -14.86440 -14.52081 -14.16313 -13.93487 -13.28280 -13.11288 -12.90044 -12.80891 -12.48115 -12.32261 -12.13027 -11.81012 -11.73019 -11.46927 -11.25878 -11.17368 -10.86477 -10.21131 -8.96132 -8.67075 -6.99922 1.08231 1.24069 1.35111 1.65456 2.08698 2.66804 2.79226 3.62965 3.83765 3.93696 4.06760 4.28795 4.38891 4.55124 4.64690 4.70952 4.80988 4.84191 4.96322 5.05768 5.13222 5.24662 5.26481 5.41022 5.45181 5.49332 5.52466 5.58903 5.67136 6.17941 6.81228 8.44546 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.050224 B = 0.009521 C = 0.008400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.369677 B = 2940.014419 C = 3332.689594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 H 0.044 0.956 4 C -0.105 4.105 5 C -0.116 4.116 6 C -0.090 4.090 7 C -0.398 4.398 8 H 0.041 0.959 9 S 1.321 4.679 10 O -0.981 6.981 11 C -0.833 4.833 12 H 0.064 0.936 13 C 0.077 3.923 14 N -0.892 5.892 15 Si 0.889 3.111 16 H -0.291 1.291 17 H -0.238 1.238 18 H -0.200 1.200 19 C -0.088 4.088 20 H 0.065 0.935 21 H 0.047 0.953 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.036 0.964 26 H 0.079 0.921 27 H 0.045 0.955 28 H 0.100 0.900 29 H 0.281 0.719 30 H 0.102 0.898 31 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.369 -4.149 8.801 17.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 H 0.062 0.938 4 C -0.142 4.142 5 C -0.155 4.155 6 C -0.128 4.128 7 C -0.515 4.515 8 H 0.060 0.940 9 S 1.528 4.472 10 O -0.975 6.975 11 C -0.973 4.973 12 H 0.082 0.918 13 C -0.133 4.133 14 N -0.526 5.526 15 Si 0.710 3.290 16 H -0.218 1.218 17 H -0.161 1.161 18 H -0.122 1.122 19 C -0.127 4.127 20 H 0.084 0.916 21 H 0.066 0.934 22 H 0.091 0.909 23 H 0.092 0.908 24 H 0.103 0.897 25 H 0.055 0.945 26 H 0.098 0.902 27 H 0.063 0.937 28 H 0.118 0.882 29 H 0.091 0.909 30 H 0.120 0.880 31 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -14.722 -4.550 7.947 17.338 hybrid contribution 1.906 2.532 -0.618 3.229 sum -12.816 -2.018 7.328 14.901 Atomic orbital electron populations 1.21803 0.93376 1.02961 1.01780 1.21128 0.96571 0.98389 0.94857 0.93787 1.21564 0.94068 1.01807 0.96765 1.21561 0.97006 0.99471 0.97447 1.21225 0.99652 1.00257 0.91682 1.27339 1.03393 1.06618 1.14200 0.94013 1.67795 0.88446 1.10352 0.80616 1.92732 1.86722 1.72012 1.46082 1.27813 1.10989 1.46157 1.12304 0.91800 1.25564 0.94694 0.92981 1.00028 1.70090 1.04916 1.40788 1.36848 0.86455 0.83036 0.79543 0.80004 1.21792 1.16106 1.12239 1.21324 0.90302 1.02978 0.98080 0.91615 0.93370 0.90917 0.90842 0.89698 0.94490 0.90225 0.93669 0.88197 0.90884 0.87965 0.93822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.19 71.98 0.66 -2.00 16 2 C -0.09 -2.22 2.72 -10.79 -0.03 -2.24 16 3 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 4 C -0.10 -2.22 5.20 30.59 0.16 -2.06 16 5 C -0.12 -3.07 5.92 30.60 0.18 -2.89 16 6 C -0.09 -2.93 5.00 30.60 0.15 -2.78 16 7 C -0.40 -15.25 2.69 30.58 0.08 -15.17 16 8 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 9 S 1.32 61.45 11.06 -56.49 -0.62 60.83 16 10 O -0.98 -57.41 16.46 -148.98 -2.45 -59.86 16 11 C -0.83 -47.88 9.30 67.74 0.63 -47.25 16 12 H 0.06 3.97 6.90 -2.92 -0.02 3.95 16 13 C 0.08 4.52 5.47 84.66 0.46 4.98 16 14 N -0.89 -54.23 13.96 21.45 0.30 -53.93 16 15 Si 0.89 42.71 26.71 68.60 1.83 44.54 16 16 H -0.29 -15.48 7.11 99.48 0.71 -14.77 16 17 H -0.24 -10.06 7.11 99.48 0.71 -9.36 16 18 H -0.20 -8.11 6.73 99.48 0.67 -7.44 16 19 C -0.09 -2.64 4.49 30.58 0.14 -2.50 16 20 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 21 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 23 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.04 1.75 6.51 -2.39 -0.02 1.74 16 28 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 30 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -75.87 258.53 2.54 -73.34 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: 1.04 Total: 7.01 kcal Atomic # 6 Polarization: -74.36 SS G_CDS: 2.44 Total: -71.92 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.30 Total: -53.93 kcal Atomic # 8 Polarization: -57.41 SS G_CDS: -2.45 Total: -59.86 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.83 Total: 44.54 kcal Atomic # 16 Polarization: 61.45 SS G_CDS: -0.62 Total: 60.83 kcal Total: -75.87 2.54 -73.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203526619.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.659 kcal (2) G-P(sol) polarization free energy of solvation -75.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds